RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 NAPRTQ6XQN6 538 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 HERC6Q8IVU3 1022 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 QKIQ96PU8 341 aaKnown RBP eCLIP12.01□□□□□ -0.492e-6■■■■■ 33.4
HMGB1-206ENST00000405805 RNF39Q9H2S5 420 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 FZD8Q9H461 694 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 MROH8Q9H579 483 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 POLR1BQ9H9Y6 1135 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 MRPL40Q9NQ50 206 aaKnown RBP12.01□□□□□ -0.49
HMGB1-206ENST00000405805 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.01□□□□□ -0.49
HMGB1-206ENST00000405805 RBPJLQ9UBG7 517 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 CXCL11O14625 94 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 PFDN6O15212 129 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 MSI1O43347 362 aaKnown RBP12.01□□□□□ -0.49
HMGB1-206ENST00000405805 PTPN1P18031 435 aaKnown RBP12.01□□□□□ -0.49
HMGB1-206ENST00000405805 ALOX12P18054 663 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 RPL10P27635 214 aaKnown RBP12.01□□□□□ -0.49
HMGB1-206ENST00000405805 NOS2P35228 1153 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 RXRGP48443 463 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 NFYCQ13952 458 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 SV2CQ496J9 727 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 CEP78Q5JTW2 689 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 SYTL1Q8IYJ3 562 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 PSMA8Q8TAA3 256 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 GATA6Q92908 595 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 C12orf42Q96LP6 360 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 RBBP8Q99708 897 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 HEPHQ9BQS7 1158 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 RTKNQ9BST9 563 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 DGCR6LQ9BY27 220 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 RHOBTB2Q9BYZ6 727 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 SEMA4BQ9NPR2 832 aaPredicted RBP12.01□□□□□ -0.49
HMGB1-206ENST00000405805 SFMBT1Q9UHJ3 866 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 PRG3Q9Y2Y8 225 aaPredicted RBP12.01□□□□□ -0.49
HMGB1-206ENST00000405805 PCDHB12Q9Y5F1 795 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 PPP2R3BQ9Y5P8 575 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 TEX28O15482 410 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 RGS5O15539 181 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 WDR47O94967 919 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 PIGRP01833 764 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 DHRS4L1P0CG22 281 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 UGT1A6P19224 532 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 AOC1P19801 751 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 TPSB2P20231 275 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 ADRA1BP35368 520 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 TPSAB1Q15661 275 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 SLC27A1Q6PCB7 646 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 SPPL2CQ8IUH8 684 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 RNF145Q96MT1 663 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 FBXO5Q9UKT4 447 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 UBR3Q6ZT12 1888 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 YJEFN3A6XGL0 299 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 TAS2R39P59534 338 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 MRPL28Q13084 256 aaKnown RBP12□□□□□ -0.49
HMGB1-206ENST00000405805 LSAMPQ13449 338 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 OGFOD2Q6N063 350 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 CHST15Q7LFX5 561 aaPredicted RBP12□□□□□ -0.49
HMGB1-206ENST00000405805 ACVR1CQ8NER5 493 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 RP9Q8TA86 221 aaKnown RBP12□□□□□ -0.49
HMGB1-206ENST00000405805 ACTRT2Q8TDY3 377 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 B3GALT6Q96L58 329 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 CCDC28BQ9BUN5 200 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 OSBPL6Q9BZF3 934 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 CXCL16Q9H2A7 254 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 FBRSL1Q9HCM7 1045 aaKnown RBP12□□□□□ -0.49
HMGB1-206ENST00000405805 HEMK1Q9Y5R4 338 aaPredicted RBP12□□□□□ -0.49
HMGB1-206ENST00000405805 GMEB1Q9Y692 573 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 FAM72CH0Y354 149 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 RHOBTB1O94844 696 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 PENKP01210 267 aaPredicted RBP12□□□□□ -0.49
HMGB1-206ENST00000405805 PSMA4P25789 261 aaKnown RBP12□□□□□ -0.49
HMGB1-206ENST00000405805 YAP1P46937 504 aaKnown RBP12□□□□□ -0.49
HMGB1-206ENST00000405805 GSSP48637 474 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 LIMK2P53671 638 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 BEX3Q00994 111 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 MAP3K10Q02779 954 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 FAM72AQ5TYM5 149 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 PPP2R2DQ66LE6 453 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 FAM72DQ6L9T8 149 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 GALNT18Q6P9A2 607 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 TUBA3EQ6PEY2 450 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 CCDC149Q6ZUS6 474 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 FAM72BQ86X60 149 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 ASZ1Q8WWH4 475 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 APBB2Q92870 758 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 C1orf50Q9BV19 199 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 CCSER2Q9H7U1 834 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 TLL2Q9Y6L7 1015 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 SNPHO15079 494 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 NBNO60934 754 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 KATNA1O75449 491 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 APOA4P06727 396 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 MYL4P12829 197 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 NPR3P17342 541 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 IL4RP24394 825 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 CCNG1P51959 295 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 GNA12Q03113 381 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 PPP1R8Q12972 351 aaKnown RBP12□□□□□ -0.49
HMGB1-206ENST00000405805 ZNF235Q14590 738 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 OR8H2Q8N162 312 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 RIN3Q8TB24 985 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms