RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 PDIA2Q13087 525 aaKnown RBP18.18■□□□□ 0.5
SDC1-203ENST00000403076 CRY1Q16526 586 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 DENND5AQ6IQ26 1287 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 TMEM92Q6UXU6 159 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 CEP128Q6ZU80 1094 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 ZNF534Q76KX8 674 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 TMPRSS6Q8IU80 811 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 HCAR2Q8TDS4 363 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 PIH1D2Q8WWB5 315 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 ARNT2Q9HBZ2 717 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 POLR3BQ9NW08 1133 aaPredicted RBP18.18■□□□□ 0.5
SDC1-203ENST00000403076 RAB21Q9UL25 225 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 ANKRD36A6QL64 1941 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 TCRBV21S2A2A0A5A6 115 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 SDR42E2A6NKP2 422 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 ADH1BP00325 375 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 ALADP13716 330 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 MGAT1P26572 445 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 GRIA4P48058 902 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 COPAP53621 1224 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 CST6Q15828 149 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 QPCTQ16769 361 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 CERCAMQ5T4B2 595 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 CASC4Q6P4E1 433 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 FBXL19Q6PCT2 694 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 SYT13Q7L8C5 426 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 TTC7BQ86TV6 843 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 GANCQ8TET4 914 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.18■□□□□ 0.58e-8■■■■■ 27.2
SDC1-203ENST00000403076 VOPP1Q96AW1 172 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 ARRDC3Q96B67 414 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 ECHDC3Q96DC8 303 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 SAYSD1Q9NPB0 183 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 DKK3Q9UBP4 350 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 MAD1L1Q9Y6D9 718 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 BANF1O75531 89 aa18.17■□□□□ 0.5
SDC1-203ENST00000403076 DNTTP04053 509 aa18.17■□□□□ 0.5
SDC1-203ENST00000403076 DCNP07585 359 aaKnown RBP18.17■□□□□ 0.5
SDC1-203ENST00000403076 PIRTP0C851 137 aa18.17■□□□□ 0.5
SDC1-203ENST00000403076 NFKBIAP25963 317 aa18.17■□□□□ 0.5
SDC1-203ENST00000403076 ITGB7P26010 798 aa18.17■□□□□ 0.5
SDC1-203ENST00000403076 DGKEP52429 567 aa18.17■□□□□ 0.5
SDC1-203ENST00000403076 RPS14P62263 151 aaKnown RBP18.17■□□□□ 0.5
SDC1-203ENST00000403076 DHX9Q08211 1270 aaKnown RBP18.17■□□□□ 0.5
SDC1-203ENST00000403076 SEPT6Q14141 434 aa18.17■□□□□ 0.5
SDC1-203ENST00000403076 UGP2Q16851 508 aa18.17■□□□□ 0.5
SDC1-203ENST00000403076 HP1BP3Q5SSJ5 553 aaPredicted RBP18.17■□□□□ 0.5
SDC1-203ENST00000403076 ZSWIM9Q86XI8 627 aa18.17■□□□□ 0.5
SDC1-203ENST00000403076 PGBD3Q8N328 593 aa18.17■□□□□ 0.5
SDC1-203ENST00000403076 BLOC1S5Q8TDH9 187 aa18.17■□□□□ 0.5
SDC1-203ENST00000403076 CLDN23Q96B33 292 aa18.17■□□□□ 0.5
SDC1-203ENST00000403076 SIPA1Q96FS4 1042 aa18.17■□□□□ 0.5
SDC1-203ENST00000403076 MKRN2Q9H000 416 aaKnown RBP18.17■□□□□ 0.5
SDC1-203ENST00000403076 SAMD15Q9P1V8 674 aa18.17■□□□□ 0.5
SDC1-203ENST00000403076 CKAP5Q14008 2032 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 TSPAN11A1L157 253 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 UPK3BL1B0FP48 263 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 UPK3BL2E5RIL1 263 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 MID1O15344 667 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 EIF3HO15372 352 aaKnown RBP eCLIP18.16■□□□□ 0.51e-11■■■□□ 17.8
SDC1-203ENST00000403076 ERLIN1O75477 346 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 PDGFBP01127 241 aaPredicted RBP18.16■□□□□ 0.5
SDC1-203ENST00000403076 PRKCGP05129 697 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 FAM153BP0C7A2 387 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 ACADMP11310 421 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 TIMP2P16035 220 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 C5AR1P21730 350 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 ABL2P42684 1182 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 RPS9P46781 194 aaKnown RBP18.16■□□□□ 0.5
SDC1-203ENST00000403076 METAP1P53582 386 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 FAM193AP78312 1265 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 CRADDP78560 199 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 GAS6Q14393 721 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 POU6F1Q14863 301 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 FAM153CQ494X1 144 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 MAP9Q49MG5 647 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 MSS51Q4VC12 460 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 LRRC73Q5JTD7 316 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 KIAA1324Q6UXG2 1013 aaKnown RBP18.16■□□□□ 0.5
SDC1-203ENST00000403076 USP45Q70EL2 814 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 PARS2Q7L3T8 475 aaKnown RBP18.16■□□□□ 0.5
SDC1-203ENST00000403076 ZBED8Q8IZ13 594 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 HMGB4Q8WW32 186 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 SMIM14Q96QK8 99 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 IL22Q9GZX6 179 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 SLC6A17Q9H1V8 727 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 CHRDQ9H2X0 955 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 SYBUQ9NX95 663 aa18.16■□□□□ 0.5
SDC1-203ENST00000403076 BCCIPQ9P287 314 aaKnown RBP eCLIP18.16■□□□□ 0.5
SDC1-203ENST00000403076 A0A0J9YYE9 177 aa18.15■□□□□ 0.5
SDC1-203ENST00000403076 PLK4O00444 970 aa18.15■□□□□ 0.5
SDC1-203ENST00000403076 TRBC1P01850 177 aa18.15■□□□□ 0.5
SDC1-203ENST00000403076 ALPIP09923 528 aa18.15■□□□□ 0.5
SDC1-203ENST00000403076 MAGEA3P43357 314 aa18.15■□□□□ 0.5
SDC1-203ENST00000403076 NEK3P51956 506 aa18.15■□□□□ 0.5
SDC1-203ENST00000403076 CCDC15Q0P6D6 951 aa18.15■□□□□ 0.5
SDC1-203ENST00000403076 SFSWAPQ12872 951 aaKnown RBP18.15■□□□□ 0.5
SDC1-203ENST00000403076 SLMAPQ14BN4 828 aa18.15■□□□□ 0.5
SDC1-203ENST00000403076 TTC31Q49AM3 519 aaPredicted RBP18.15■□□□□ 0.5
SDC1-203ENST00000403076 CCDC38Q502W7 563 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms