RNA–Protein interactions for RNA: ENST00000400540.5

LINC00544-201, long intergenic non-protein coding RNA 544, humanhuman

TSL 5 BASIC

Gene LINC00544, Length 1,031 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00544-201ENST00000400540 PCDH12Q9NPG4 1184 aa12.03□□□□□ -0.48
LINC00544-201ENST00000400540 TAB2Q9NYJ8 693 aa12.03□□□□□ -0.48
LINC00544-201ENST00000400540 DKK3Q9UBP4 350 aa12.03□□□□□ -0.48
LINC00544-201ENST00000400540 PISDQ9UG56 409 aa12.03□□□□□ -0.48
LINC00544-201ENST00000400540 MFHAS1Q9Y4C4 1052 aa12.03□□□□□ -0.48
LINC00544-201ENST00000400540 FLNCQ14315 2725 aa12.02□□□□□ -0.48
LINC00544-201ENST00000400540 AHCTF1Q8WYP5 2266 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 ZSCAN5CA6NGD5 496 aaPredicted RBP12.02□□□□□ -0.49
LINC00544-201ENST00000400540 RASA4BC9J798 803 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 EPHB6O15197 1021 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 CCP110O43303 1012 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 RASA4O43374 803 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 RASGRP1O95267 797 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 ALPIP09923 528 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 XPAP23025 273 aaPredicted RBP12.02□□□□□ -0.49
LINC00544-201ENST00000400540 EPHB2P29323 1055 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 RFC1P35251 1148 aaPredicted RBP12.02□□□□□ -0.49
LINC00544-201ENST00000400540 ETV5P41161 510 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 LIG3P49916 1009 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 PEX5P50542 639 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 BLKP51451 505 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 SRP54P61011 504 aaKnown RBP12.02□□□□□ -0.49
LINC00544-201ENST00000400540 UBE2HP62256 183 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 SERINC3Q13530 473 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 TMPRSS9Q7Z410 1059 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 GKN2Q86XP6 184 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 ZNF677Q86XU0 584 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 Q8N9G6 341 aaPredicted RBP12.02□□□□□ -0.49
LINC00544-201ENST00000400540 OR1E3Q8WZA6 343 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 NTAN1Q96AB6 310 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 FUBP1Q96AE4 644 aaKnown RBP12.02□□□□□ -0.49
LINC00544-201ENST00000400540 PCDHB18PQ96TA0 734 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 NCAPGQ9BPX3 1015 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 LRRN3Q9H3W5 708 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 RETREG1Q9H6L5 497 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 MRPL40Q9NQ50 206 aaKnown RBP12.02□□□□□ -0.49
LINC00544-201ENST00000400540 KLQ9UEF7 1012 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 LOXL2Q9Y4K0 774 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 PCDHGA7Q9Y5G6 932 aa12.02□□□□□ -0.49
LINC00544-201ENST00000400540 NAV2Q8IVL1 2488 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 TLN1Q9Y490 2541 aaKnown RBP12.01□□□□□ -0.49
LINC00544-201ENST00000400540 PRAMEF33A0A0G2JMD5 474 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 TSPAN11A1L157 253 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 TMEM202A6NGA9 273 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 CREB3O43889 395 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 BUB1BO60566 1050 aaPredicted RBP12.01□□□□□ -0.49
LINC00544-201ENST00000400540 PRAMEF10O60809 474 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 WISP1O95388 367 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 KRT3P12035 628 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 UNGP13051 313 aaPredicted RBP12.01□□□□□ -0.49
LINC00544-201ENST00000400540 GPD1P21695 349 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 CCKBRP32239 447 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 MMP12P39900 470 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 RGRP47804 291 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 JAM2P57087 298 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 POLR2FP61218 127 aaKnown RBP12.01□□□□□ -0.49
LINC00544-201ENST00000400540 KCNC4Q03721 635 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 ELP6Q0PNE2 266 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 EIF3IQ13347 325 aaKnown RBP12.01□□□□□ -0.49
LINC00544-201ENST00000400540 UGP2Q16851 508 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 INO80DQ53TQ3 878 aaPredicted RBP12.01□□□□□ -0.49
LINC00544-201ENST00000400540 TCP11X2Q5H9J9 407 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 WDR59Q6PJI9 974 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 LVRNQ6Q4G3 990 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 SLFN11Q7Z7L1 901 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 VASH2Q86V25 355 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 DNAAF5Q86Y56 855 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 CCNJLQ8IV13 435 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 GPR156Q8NFN8 814 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 SCG3Q8WXD2 468 aaKnown RBP12.01□□□□□ -0.49
LINC00544-201ENST00000400540 CASKIN2Q8WXE0 1202 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 EXTL1Q92935 676 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 WDR92Q96MX6 357 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 RBM15Q96T37 977 aaKnown RBP eCLIP12.01□□□□□ -0.49
LINC00544-201ENST00000400540 SELENOOQ9BVL4 669 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 STRADBQ9C0K7 418 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 PDFQ9HBH1 243 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 FGF22Q9HCT0 170 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 NLRC4Q9NPP4 1024 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 FOXJ2Q9P0K8 574 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 DAAM1Q9Y4D1 1078 aa12.01□□□□□ -0.49
LINC00544-201ENST00000400540 PTPN13Q12923 2485 aa12□□□□□ -0.49
LINC00544-201ENST00000400540 TMEM110-MUSTN1A8MSY1 372 aa12□□□□□ -0.49
LINC00544-201ENST00000400540 B4DGG1 531 aa12□□□□□ -0.49
LINC00544-201ENST00000400540 J3KR12 359 aa12□□□□□ -0.49
LINC00544-201ENST00000400540 JMJD7P0C870 316 aa12□□□□□ -0.49
LINC00544-201ENST00000400540 LIPCP11150 499 aa12□□□□□ -0.49
LINC00544-201ENST00000400540 WT1P19544 449 aaPredicted RBP12□□□□□ -0.49
LINC00544-201ENST00000400540 HTR1BP28222 390 aa12□□□□□ -0.49
LINC00544-201ENST00000400540 SOX5P35711 763 aa12□□□□□ -0.49
LINC00544-201ENST00000400540 RALGDSQ12967 914 aa12□□□□□ -0.49
LINC00544-201ENST00000400540 EFHC2Q5JST6 749 aa12□□□□□ -0.49
LINC00544-201ENST00000400540 SCYL2Q6P3W7 929 aa12□□□□□ -0.49
LINC00544-201ENST00000400540 USP53Q70EK8 1073 aa12□□□□□ -0.49
LINC00544-201ENST00000400540 ZFAND4Q86XD8 727 aa12□□□□□ -0.49
LINC00544-201ENST00000400540 CAMK1DQ8IU85 385 aa12□□□□□ -0.49
LINC00544-201ENST00000400540 PELI3Q8N2H9 469 aa12□□□□□ -0.49
LINC00544-201ENST00000400540 CCL4L1Q8NHW4 92 aa12□□□□□ -0.49
LINC00544-201ENST00000400540 SGF29Q96ES7 293 aa12□□□□□ -0.49
LINC00544-201ENST00000400540 CELF6Q96J87 481 aaKnown RBP12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms