RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 SNX15Q9NRS6 342 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 XPR1Q9UBH6 696 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 IKZF3Q9UKT9 509 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 ENTPD4Q9Y227 616 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 TNS2Q63HR2 1409 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 BDNFP23560 247 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 TTPAP49638 278 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 GALK1P51570 392 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 QPCTQ16769 361 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 INSCQ1MX18 579 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 AFTPHQ6ULP2 937 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 ZNF540Q8NDQ6 660 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 MOSPD2Q8NHP6 518 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 ATL1Q8WXF7 558 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 MAGEB10Q96LZ2 347 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 WDR12Q9GZL7 423 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 GIN1Q9NXP7 522 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 MARCH2Q9P0N8 246 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 ROBO3Q96MS0 1386 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 BPGMP07738 259 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 SERPINA4P29622 427 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 CCNHP51946 323 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 SMIM11AP58511 58 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 TAS2R40P59535 323 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 DPYSQ14117 519 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 PACS1Q6VY07 963 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 FAM13CQ8NE31 585 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 PWWP2AQ96N64 755 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 ABHD16BQ9H3Z7 469 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 TIMMDC1Q9NPL8 285 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 ADARB2Q9NS39 739 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 FBXO5Q9UKT4 447 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 DCDC2CA8MYV0 355 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 SLC28A1O00337 649 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 TEX28O15482 410 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 ULK1O75385 1050 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 BANF1O75531 89 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 NFICP08651 508 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 CCNB1P14635 433 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 EPHA3P29320 983 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 RPL3P39023 403 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 ACLYP53396 1101 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 ATP6V0D1P61421 351 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 IL17AQ16552 155 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 LIN54Q6MZP7 749 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 GPRIN3Q6ZVF9 776 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 AMIGO2Q86SJ2 522 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 COLGALT2Q8IYK4 626 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 CLYBLQ8N0X4 340 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 VGLL2Q8N8G2 317 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 VPS35Q96QK1 796 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 GNPTGQ9UJJ9 305 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 CLTCQ00610 1675 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 AZIN1O14977 448 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 GSC2O15499 205 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 SGTAO43765 313 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 FARP2O94887 1054 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 IDO1P14902 403 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 ITGA3P26006 1051 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 PSMD4P55036 377 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 PLD1Q13393 1074 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 MFSD10Q14728 455 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 NDUFAF6Q330K2 333 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 FAM171A1Q5VUB5 890 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 FKBP1CQ5VVH2 108 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 GPR107Q5VW38 600 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 GCNT7Q6ZNI0 430 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 ADAMTSL2Q86TH1 951 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 VSIG10LQ86VR7 867 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 ANKRD52Q8NB46 1076 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 ARRDC4Q8NCT1 418 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 REXO5Q96IC2 774 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 SENP6Q9GZR1 1112 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 DHX33Q9H6R0 707 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 TRPV5Q9NQA5 729 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 UXTQ9UBK9 157 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 EFR3BQ9Y2G0 817 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 PIK3C2BO00750 1634 aa10.31□□□□□ -0.76
LIMCH1-203ENST00000396595 A0A1W2PPM1 405 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 BBIP1A8MTZ0 92 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 PRR5-ARHGAP8B1AHC4 643 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 CALCAP01258 141 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 DBTP11182 482 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 CKBP12277 381 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 NTSP30990 170 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 CD86P42081 329 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 CRATP43155 626 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 FKBP1AP62942 108 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 ARHGAP8P85298 464 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 CXCL9Q07325 125 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 PPIL2Q13356 520 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 FSCN1Q16658 493 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 USP45Q70EL2 814 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 CLNKQ7Z7G1 428 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 C10orf107Q8IVU9 208 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 C12orf56Q8IXR9 622 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 ADI1Q9BV57 179 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 NLNQ9BYT8 704 aa10.3□□□□□ -0.76
LIMCH1-203ENST00000396595 ARL8BQ9NVJ2 186 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms