RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 WDR5P61964 334 aaKnown RBP11.22□□□□□ -0.61
CUX1-204ENST00000393824 RHDQ02161 417 aa11.22□□□□□ -0.61
CUX1-204ENST00000393824 CAMK2BQ13554 666 aa11.22□□□□□ -0.61
CUX1-204ENST00000393824 PPM1LQ5SGD2 360 aa11.22□□□□□ -0.61
CUX1-204ENST00000393824 PPP4R4Q6NUP7 873 aa11.22□□□□□ -0.61
CUX1-204ENST00000393824 NPNTQ6UXI9 565 aa11.22□□□□□ -0.61
CUX1-204ENST00000393824 SREK1Q8WXA9 508 aaKnown RBP11.22□□□□□ -0.61
CUX1-204ENST00000393824 STARD8Q92502 1023 aa11.22□□□□□ -0.61
CUX1-204ENST00000393824 EFHD2Q96C19 240 aaPredicted RBP11.22□□□□□ -0.61
CUX1-204ENST00000393824 RCN3Q96D15 328 aa11.22□□□□□ -0.61
CUX1-204ENST00000393824 OLFM1Q99784 485 aa11.22□□□□□ -0.61
CUX1-204ENST00000393824 RTP3Q9BQQ7 232 aa11.22□□□□□ -0.61
CUX1-204ENST00000393824 CNPY3Q9BT09 278 aa11.22□□□□□ -0.61
CUX1-204ENST00000393824 NPLQ9BXD5 320 aaPredicted RBP11.22□□□□□ -0.61
CUX1-204ENST00000393824 ZNF385DQ9H6B1 395 aa11.22□□□□□ -0.61
CUX1-204ENST00000393824 ELAC1Q9H777 363 aaKnown RBP11.22□□□□□ -0.61
CUX1-204ENST00000393824 EFCAB1Q9HAE3 211 aa11.22□□□□□ -0.61
CUX1-204ENST00000393824 ATAD3AQ9NVI7 634 aa11.22□□□□□ -0.61
CUX1-204ENST00000393824 TMEM216Q9P0N5 145 aa11.22□□□□□ -0.61
CUX1-204ENST00000393824 PCSK1NQ9UHG2 260 aa11.22□□□□□ -0.61
CUX1-204ENST00000393824 A0A1W2PPW3 197 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 TMEM114B3SHH9 223 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 TMX2-CTNND1H3BSU7 103 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 PLOD2O00469 737 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 TRIM38O00635 465 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 CFLARO15519 480 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 SNAP91O60641 907 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 EIF2S1P05198 315 aaKnown RBP11.21□□□□□ -0.61
CUX1-204ENST00000393824 CD19P15391 556 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 OR1G1P47890 313 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 RABGGTBP53611 331 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 CDH6P55285 790 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 BOLA3Q53S33 107 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 EGFLAMQ63HQ2 1017 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 STEAP4Q687X5 459 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 ANKRD26P1Q6NSI1 321 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 ZNF534Q76KX8 674 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 PEX5LQ8IYB4 626 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 RNF148Q8N7C7 305 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 FAM47BQ8NA70 645 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 TNIP2Q8NFZ5 429 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 OR6B3Q8NGW1 331 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.21□□□□□ -0.61
CUX1-204ENST00000393824 TANKQ92844 425 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 USP13Q92995 863 aaPredicted RBP11.21□□□□□ -0.61
CUX1-204ENST00000393824 TMEM176AQ96HP8 235 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 CNDP2Q96KP4 475 aaKnown RBP11.21□□□□□ -0.61
CUX1-204ENST00000393824 HGH1Q9BTY7 390 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 MARCH5Q9NX47 278 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 TMEM9Q9P0T7 183 aa11.21□□□□□ -0.61
CUX1-204ENST00000393824 KCNN4O15554 427 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 GCATO75600 419 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 DGKIO75912 1065 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 ENO3P13929 434 aaPredicted RBP11.21□□□□□ -0.62
CUX1-204ENST00000393824 TKTP29401 623 aaKnown RBP11.21□□□□□ -0.62
CUX1-204ENST00000393824 SLC11A1P49279 550 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 NIPAL4Q0D2K0 466 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 GRSF1Q12849 480 aaKnown RBP eCLIP11.21□□□□□ -0.62
CUX1-204ENST00000393824 ART3Q13508 389 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 ATP1A4Q13733 1029 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 SEPT6Q14141 434 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 TRIM25Q14258 630 aaKnown RBP11.21□□□□□ -0.62
CUX1-204ENST00000393824 FGD3Q5JSP0 725 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 IRAK1BP1Q5VVH5 260 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 NPAS4Q8IUM7 802 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 CPNE9Q8IYJ1 553 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 PLD5Q8N7P1 536 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 CNTD1Q8N815 330 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.21□□□□□ -0.62
CUX1-204ENST00000393824 APPL2Q8NEU8 664 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 LRTOMTQ8WZ04 291 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 TMEM209Q96SK2 561 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 CPXM1Q96SM3 734 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 GPR62Q9BZJ7 368 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 SEMA6AQ9H2E6 1030 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 RC3H2Q9HBD1 1191 aaKnown RBP11.21□□□□□ -0.62
CUX1-204ENST00000393824 MRPL40Q9NQ50 206 aaKnown RBP11.21□□□□□ -0.62
CUX1-204ENST00000393824 ANLNQ9NQW6 1124 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 TMEM30AQ9NV96 361 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 RIC8BQ9NVN3 520 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 SUCOQ9UBS9 1254 aaKnown RBP11.21□□□□□ -0.62
CUX1-204ENST00000393824 LRFN2Q9ULH4 789 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 ITM2BQ9Y287 266 aa11.21□□□□□ -0.62
CUX1-204ENST00000393824 NRP1O14786 923 aa11.2□□□□□ -0.62
CUX1-204ENST00000393824 AKAP10O43572 662 aa11.2□□□□□ -0.62
CUX1-204ENST00000393824 HSPA4LO95757 839 aa11.2□□□□□ -0.62
CUX1-204ENST00000393824 MLNP12872 115 aa11.2□□□□□ -0.62
CUX1-204ENST00000393824 CD247P20963 164 aa11.2□□□□□ -0.62
CUX1-204ENST00000393824 GPD1P21695 349 aa11.2□□□□□ -0.62
CUX1-204ENST00000393824 HK2P52789 917 aa11.2□□□□□ -0.62
CUX1-204ENST00000393824 TAF5Q15542 800 aa11.2□□□□□ -0.62
CUX1-204ENST00000393824 SV2CQ496J9 727 aa11.2□□□□□ -0.62
CUX1-204ENST00000393824 PPP6R3Q5H9R7 873 aaPredicted RBP11.2□□□□□ -0.62
CUX1-204ENST00000393824 AARS2Q5JTZ9 985 aaKnown RBP11.2□□□□□ -0.62
CUX1-204ENST00000393824 PPP1R26Q5T8A7 1209 aaPredicted RBP11.2□□□□□ -0.62
CUX1-204ENST00000393824 SLC9A4Q6AI14 798 aa11.2□□□□□ -0.62
CUX1-204ENST00000393824 SPRED2Q7Z698 418 aa11.2□□□□□ -0.62
CUX1-204ENST00000393824 CDKL3Q8IVW4 592 aaPredicted RBP11.2□□□□□ -0.62
CUX1-204ENST00000393824 ABI1Q8IZP0 508 aa11.2□□□□□ -0.62
CUX1-204ENST00000393824 MPP5Q8N3R9 675 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms