RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 AHI1Q8N157 1196 aa18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 RAB3IL1Q8TBN0 382 aa18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 WFIKKN2Q8TEU8 576 aa18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 ISG20Q96AZ6 181 aaKnown RBP18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 MFSD3Q96ES6 412 aa18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 ASB16Q96NS5 453 aa18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 FCRL3Q96P31 734 aaPredicted RBP18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 TRIM56Q9BRZ2 755 aaKnown RBP18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 TUBB6Q9BUF5 446 aa18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 MANSC1Q9H8J5 431 aa18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 TRPV4Q9HBA0 871 aa18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 SMYD2Q9NRG4 433 aa18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 HACD3Q9P035 362 aa18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 SLC8A2Q9UPR5 921 aa18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 WNT6Q9Y6F9 365 aa18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 C2orf16Q68DN1 1984 aa18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 TRIM49D1C9J1S8 452 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 COPEO14579 308 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 TIMM44O43615 452 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 ERVK-10P10266 1014 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 NQO1P15559 274 aaKnown RBP18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 NMBRP28336 390 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 CHRNA4P43681 627 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 RPL26P61254 145 aaKnown RBP18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 SNRPD1P62314 119 aaKnown RBP18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 PDGFRLQ15198 375 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 TCEAL5Q5H9L2 206 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 TSTD2Q5T7W7 516 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 NCEH1Q6PIU2 408 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 CES3Q6UWW8 571 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 PACS1Q6VY07 963 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 GET4Q7L5D6 327 aaPredicted RBP18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 BRSK1Q8TDC3 778 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 C10orf82Q8WW14 230 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 FGF13Q92913 245 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 ATP2A3Q93084 1043 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 RMDN1Q96DB5 314 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 RMDN2Q96LZ7 410 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 LRRC37BQ96QE4 947 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 RPL26L1Q9UNX3 145 aaKnown RBP18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 HS3ST2Q9Y278 367 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 RAI2Q9Y5P3 530 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 UNC5CO95185 931 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 CD160O95971 181 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 ADH5P11766 374 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 SLC8A1P32418 973 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 NNMTP40261 264 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 RASSF2P50749 326 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 RAD51Q06609 339 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 HYAL1Q12794 435 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 GRM3Q14832 879 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 FAM78AQ5JUQ0 283 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 SWT1Q5T5J6 900 aaKnown RBP18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 ASRGL1Q7L266 308 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 OTOAQ7RTW8 1153 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 ACMSDQ8TDX5 336 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 KLHL29Q96CT2 875 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 SERAC1Q96JX3 654 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 EXOC2Q96KP1 924 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 LMLNQ96KR4 655 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 RIPOR3Q96MK2 946 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 RAB3IPQ96QF0 476 aaPredicted RBP18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 TRIB3Q96RU7 358 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 ARHGEF3Q9NR81 526 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 TREX1Q9NSU2 369 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 CDH7Q9ULB5 785 aa18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 FCF1Q9Y324 198 aaKnown RBP18.31■□□□□ 0.52
CCDC88C-203ENST00000389856 TTC24A2A3L6 582 aaPredicted RBP18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 HOXC11O43248 304 aaPredicted RBP18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 SOCS5O75159 536 aa18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 GSRP00390 522 aa18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 PYGBP11216 843 aa18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 POLR2EP19388 210 aaKnown RBP18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 HLA-FP30511 346 aa18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 RGRP47804 291 aa18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 NUMBP49757 651 aa18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 MLLT1Q03111 559 aaPredicted RBP18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 DHCR24Q15392 516 aa18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 HSP90AA5PQ58FG0 334 aa18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 TEDDM1Q5T9Z0 273 aa18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 ICE2Q659A1 982 aa18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 KIAA0408Q6ZU52 694 aa18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 STRA8Q7Z7C7 330 aa18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 PCDH20Q8N6Y1 951 aaKnown RBP18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 PAF1Q8N7H5 531 aa18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 RIN3Q8TB24 985 aa18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 TRIM55Q9BYV6 548 aa18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 LINC00597Q9H2U6 94 aa18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 ATP13A3Q9H7F0 1226 aa18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 SAR1AQ9NR31 198 aa18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 ACTL7AQ9Y615 435 aa18.3■□□□□ 0.52
CCDC88C-203ENST00000389856 MROH6A6NGR9 719 aa18.29■□□□□ 0.52
CCDC88C-203ENST00000389856 C2orf81A6NN90 581 aa18.29■□□□□ 0.52
CCDC88C-203ENST00000389856 RFXAPO00287 272 aa18.29■□□□□ 0.52
CCDC88C-203ENST00000389856 PIAS1O75925 651 aa18.29■□□□□ 0.52
CCDC88C-203ENST00000389856 VAPBO95292 243 aa18.29■□□□□ 0.52
CCDC88C-203ENST00000389856 ASLP04424 464 aa18.29■□□□□ 0.52
CCDC88C-203ENST00000389856 POLD2P49005 469 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms