RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 CETN2P41208 172 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 GRIA4P48058 902 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 ATXN3P54252 364 aaPredicted RBP13.46□□□□□ -0.25
VPS28-202ENST00000377348 CLDN2P57739 230 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 FAM193AP78312 1265 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 ARHGAP8P85298 464 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 OTUD4Q01804 1114 aaKnown RBP13.46□□□□□ -0.25
VPS28-202ENST00000377348 NOMO1Q15155 1222 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 PTPRRQ15256 657 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 KIF19Q2TAC6 998 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 RALGPS1Q5JS13 557 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 MEI1Q5TIA1 1274 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 KDM7AQ6ZMT4 941 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 TMEM145Q8NBT3 493 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 ACTL9Q8TC94 416 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 NETO1Q8TDF5 533 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 CXorf40AQ8TE69 158 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 RMDN1Q96DB5 314 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 QKIQ96PU8 341 aaKnown RBP eCLIP13.46□□□□□ -0.25
VPS28-202ENST00000377348 ALS2CR12Q96Q35 445 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 SMIM14Q96QK8 99 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 SLC17A9Q9BYT1 436 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 BRD8Q9H0E9 1235 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 TMEM9BQ9NQ34 198 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 AMACRQ9UHK6 382 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 TPX2Q9ULW0 747 aaKnown RBP13.46□□□□□ -0.25
VPS28-202ENST00000377348 DMTF1Q9Y222 760 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 EFR3BQ9Y2G0 817 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 ANKRD6Q9Y2G4 727 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 COQ6Q9Y2Z9 468 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 RAI2Q9Y5P3 530 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 SNX11Q9Y5W9 270 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 TCRBV7S2A1N4TA0A589 114 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 PRAMEF26H0Y7S4 382 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 H7C0C1 242 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 PGLSO95336 258 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 CPP00450 1065 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 SYPP08247 313 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 MMP2P08253 660 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 PDHA1P08559 390 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 MMP12P39900 470 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 CD86P42081 329 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 ATP5OP48047 213 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 SKOR1P84550 965 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 ELP6Q0PNE2 266 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 WASHC5Q12768 1159 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 RALGDSQ12967 914 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 TEAD4Q15561 434 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 UAP1L1Q3KQV9 507 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 TMEM52BQ4KMG9 183 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 ARMC12Q5T9G4 340 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 ERAP2Q6P179 960 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 REXO1L1PQ8IX06 675 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 MINDY1Q8N5J2 469 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 RBM15Q96T37 977 aaKnown RBP eCLIP13.45□□□□□ -0.26
VPS28-202ENST00000377348 C1QTNF2Q9BXJ5 285 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 IL21RQ9HBE5 538 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 B4GALT6Q9UBX8 382 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 CDV3Q9UKY7 258 aaKnown RBP13.45□□□□□ -0.26
VPS28-202ENST00000377348 TRPM6Q9BX84 2022 aa13.45□□□□□ -0.26
VPS28-202ENST00000377348 A0A0U1RQS6 177 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 GOLGA8CPA6NN73 597 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 HACD1B0YJ81 288 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 F5H423 210 aaPredicted RBP13.44□□□□□ -0.26
VPS28-202ENST00000377348 VILLO15195 856 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 FZD6O60353 706 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 TM7SF2O76062 418 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 TJP3O95049 919 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 C6P13671 934 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 CTPS1P17812 591 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 HNRNPA2B1P22626 353 aaKnown RBP13.44□□□□□ -0.26
VPS28-202ENST00000377348 RBL1P28749 1068 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 AKT2P31751 481 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 CD68P34810 354 aaPredicted RBP13.44□□□□□ -0.26
VPS28-202ENST00000377348 NUDT1P36639 197 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 CTSKP43235 329 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 LIG3P49916 1009 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 SUOXP51687 545 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 C21orf59P57076 290 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 EIF3EP60228 445 aaKnown RBP13.44□□□□□ -0.26
VPS28-202ENST00000377348 POLR2LP62875 67 aaKnown RBP13.44□□□□□ -0.26
VPS28-202ENST00000377348 SGCGQ13326 291 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 STAT4Q14765 748 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 RPS6KA1Q15418 735 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 HLA-BQ31612 363 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 TEX44Q53QW1 395 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 SLC45A4Q5BKX6 768 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 PRAMEF14Q5SWL7 426 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 GCNT7Q6ZNI0 430 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 TRIM58Q8NG06 486 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 PIH1D2Q8WWB5 315 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 HTR3CQ8WXA8 447 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 TEKT5Q96M29 485 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 KLF6Q99612 283 aaPredicted RBP13.44□□□□□ -0.26
VPS28-202ENST00000377348 TDRD1Q9BXT4 1180 aaKnown RBP13.44□□□□□ -0.26
VPS28-202ENST00000377348 GAREM1Q9H706 876 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 GLOD4Q9HC38 313 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 HAUS2Q9NVX0 235 aa13.44□□□□□ -0.26
VPS28-202ENST00000377348 TRMT1Q9NXH9 659 aaKnown RBP13.44□□□□□ -0.26
VPS28-202ENST00000377348 CHKBQ9Y259 395 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 136.7 ms