RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 PMPCBO75439 489 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 IPO13O94829 963 aaKnown RBP16.49■□□□□ 0.23
SDC4-201ENST00000372733 PSMD5Q16401 504 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 PPP4R4Q6NUP7 873 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 ERMP1Q7Z2K6 904 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 RETREG3Q86VR2 466 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 EPHX4Q8IUS5 362 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 AFAP1L2Q8N4X5 818 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 OR2T34Q8NGX1 318 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 OR2T3Q8NH03 318 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 FNDC8Q8TC99 324 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 ISOC1Q96CN7 298 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 BIRC8Q96P09 236 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 UPF3AQ9H1J1 476 aaKnown RBP16.49■□□□□ 0.23
SDC4-201ENST00000372733 WDCPQ9H6R7 721 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 ARHGEF38Q9NXL2 777 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 RRN3Q9NYV6 651 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 SLC8A2Q9UPR5 921 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 AURKCQ9UQB9 309 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 MTF2Q9Y483 593 aaPredicted RBP16.49■□□□□ 0.23
SDC4-201ENST00000372733 TANC1Q9C0D5 1861 aa16.48■□□□□ 0.23
SDC4-201ENST00000372733 ADM5C9JUS6 153 aa16.48■□□□□ 0.23
SDC4-201ENST00000372733 C9JVG2 144 aa16.48■□□□□ 0.23
SDC4-201ENST00000372733 AP3B1O00203 1094 aa16.48■□□□□ 0.23
SDC4-201ENST00000372733 UBFD1O14562 309 aaKnown RBP16.48■□□□□ 0.23
SDC4-201ENST00000372733 ZSCAN9O15535 394 aaPredicted RBP16.48■□□□□ 0.23
SDC4-201ENST00000372733 GPR32O75388 356 aa16.48■□□□□ 0.23
SDC4-201ENST00000372733 BMP10O95393 424 aa16.48■□□□□ 0.23
SDC4-201ENST00000372733 KPNA2P52292 529 aaKnown RBP16.48■□□□□ 0.23
SDC4-201ENST00000372733 MAP7D1Q3KQU3 841 aa16.48■□□□□ 0.23
SDC4-201ENST00000372733 IL31Q6EBC2 164 aa16.48■□□□□ 0.23
SDC4-201ENST00000372733 FAM45BPQ6NSW5 357 aa16.48■□□□□ 0.23
SDC4-201ENST00000372733 C8orf82Q6P1X6 216 aaPredicted RBP16.48■□□□□ 0.23
SDC4-201ENST00000372733 GPR141Q7Z602 305 aa16.48■□□□□ 0.23
SDC4-201ENST00000372733 ZMIZ2Q8NF64 920 aa16.48■□□□□ 0.23
SDC4-201ENST00000372733 FAM45AQ8TCE6 357 aa16.48■□□□□ 0.23
SDC4-201ENST00000372733 TCF12Q99081 682 aa16.48■□□□□ 0.23
SDC4-201ENST00000372733 TDRKHQ9Y2W6 561 aaKnown RBP16.48■□□□□ 0.23
SDC4-201ENST00000372733 DLGAP1O14490 977 aa16.48■□□□□ 0.23
SDC4-201ENST00000372733 HNRNPCP07910 306 aaKnown RBP eCLIP16.48■□□□□ 0.23
SDC4-201ENST00000372733 FAM83EQ2M2I3 478 aa16.48■□□□□ 0.23
SDC4-201ENST00000372733 MOB2Q70IA6 237 aa16.48■□□□□ 0.23
SDC4-201ENST00000372733 FUNDC1Q8IVP5 155 aa16.48■□□□□ 0.23
SDC4-201ENST00000372733 ARRDC4Q8NCT1 418 aa16.48■□□□□ 0.23
SDC4-201ENST00000372733 EML4Q9HC35 981 aaKnown RBP16.48■□□□□ 0.23
SDC4-201ENST00000372733 CDC14AQ9UNH5 594 aa16.48■□□□□ 0.23
SDC4-201ENST00000372733 AAR2Q9Y312 384 aaKnown RBP16.48■□□□□ 0.23
SDC4-201ENST00000372733 PDCD11Q14690 1871 aaKnown RBP16.47■□□□□ 0.23
SDC4-201ENST00000372733 CROCCQ5TZA2 2017 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 NR5A2O00482 541 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 NME4O00746 187 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 CACNG3O60359 315 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 SEC24DO94855 1032 aaPredicted RBP16.47■□□□□ 0.23
SDC4-201ENST00000372733 ALDOCP09972 364 aaKnown RBP16.47■□□□□ 0.23
SDC4-201ENST00000372733 BMP2P12643 396 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 DNAJB2P25686 324 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 POLD2P49005 469 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 POU4F1Q01851 419 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 TBCELQ5QJ74 424 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 FAM35AQ86V20 835 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 KLHDC8BQ8IXV7 354 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 ATPAF2Q8N5M1 289 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 TOP6BLQ8N6T0 577 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 TMEM40Q8WWA1 233 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 C3orf30Q96M34 536 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 RHOBTB2Q9BYZ6 727 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 GLOD4Q9HC38 313 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 TREX1Q9NSU2 369 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 GIMAP2Q9UG22 337 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 ZNF510Q9Y2H8 683 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 PSMD3O43242 534 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 FOXD2O60548 495 aaPredicted RBP16.47■□□□□ 0.23
SDC4-201ENST00000372733 IMPDH2P12268 514 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 ETFBP38117 255 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 NEPROQ6NW34 567 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 TTC33Q6PID6 262 aaPredicted RBP16.47■□□□□ 0.23
SDC4-201ENST00000372733 DHRS4L2Q6PKH6 230 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 TAC4Q86UU9 113 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 ANKRD49Q8WVL7 239 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 C12orf43Q96C57 262 aaKnown RBP16.47■□□□□ 0.23
SDC4-201ENST00000372733 SIK2Q9H0K1 926 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 GSTO2Q9H4Y5 243 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 MROH8Q9H579 483 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 EGFL7Q9UHF1 273 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 TRAF6Q9Y4K3 522 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 TIMM13Q9Y5L4 95 aaPredicted RBP16.47■□□□□ 0.23
SDC4-201ENST00000372733 PTGDR2Q9Y5Y4 395 aa16.47■□□□□ 0.23
SDC4-201ENST00000372733 STAMBPO95630 424 aa16.46■□□□□ 0.23
SDC4-201ENST00000372733 CLIC3O95833 236 aa16.46■□□□□ 0.23
SDC4-201ENST00000372733 HSPA8P11142 646 aaKnown RBP16.46■□□□□ 0.23
SDC4-201ENST00000372733 DARSP14868 501 aaKnown RBP16.46■□□□□ 0.23
SDC4-201ENST00000372733 C16orf72Q14CZ0 275 aa16.46■□□□□ 0.23
SDC4-201ENST00000372733 KCTD21Q4G0X4 260 aa16.46■□□□□ 0.23
SDC4-201ENST00000372733 BHLHA9Q7RTU4 235 aa16.46■□□□□ 0.23
SDC4-201ENST00000372733 LZTR1Q8N653 840 aa16.46■□□□□ 0.23
SDC4-201ENST00000372733 MIPOL1Q8TD10 442 aa16.46■□□□□ 0.23
SDC4-201ENST00000372733 RNF34Q969K3 372 aa16.46■□□□□ 0.23
SDC4-201ENST00000372733 TSGA13Q96PP4 275 aa16.46■□□□□ 0.23
SDC4-201ENST00000372733 FCRL5Q96RD9 977 aa16.46■□□□□ 0.23
SDC4-201ENST00000372733 FSD1LQ9BXM9 530 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms