RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 IRF7Q92985 503 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 HDAC10Q969S8 669 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 RSPRY1Q96DX4 576 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 MECRQ9BV79 373 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 IQCGQ9H095 443 aaKnown RBP13.87□□□□□ -0.19
PTPRF-202ENST00000372405 SUDS3Q9H7L9 328 aaPredicted RBP13.87□□□□□ -0.19
PTPRF-202ENST00000372405 SPHK2Q9NRA0 654 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 FBXO5Q9UKT4 447 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 WNT6Q9Y6F9 365 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 ZNF197O14709 1029 aa13.86□□□□□ -0.19
PTPRF-202ENST00000372405 SLC7A4O43246 635 aa13.86□□□□□ -0.19
PTPRF-202ENST00000372405 FZD6O60353 706 aa13.86□□□□□ -0.19
PTPRF-202ENST00000372405 SNX3O60493 162 aa13.86□□□□□ -0.19
PTPRF-202ENST00000372405 HAUS5O94927 633 aa13.86□□□□□ -0.19
PTPRF-202ENST00000372405 SLC8A1P32418 973 aa13.86□□□□□ -0.19
PTPRF-202ENST00000372405 STK19P49842 368 aaPredicted RBP13.86□□□□□ -0.19
PTPRF-202ENST00000372405 SERPINB8P50452 374 aa13.86□□□□□ -0.19
PTPRF-202ENST00000372405 THOC5Q13769 683 aaKnown RBP13.86□□□□□ -0.19
PTPRF-202ENST00000372405 LY6G5CQ5SRR4 150 aa13.86□□□□□ -0.19
PTPRF-202ENST00000372405 CES4AQ5XG92 561 aa13.86□□□□□ -0.19
PTPRF-202ENST00000372405 PPP2R2DQ66LE6 453 aa13.86□□□□□ -0.19
PTPRF-202ENST00000372405 C16orf46Q6P387 395 aa13.86□□□□□ -0.19
PTPRF-202ENST00000372405 NLRP9Q7RTR0 991 aa13.86□□□□□ -0.19
PTPRF-202ENST00000372405 SRLQ86TD4 932 aa13.86□□□□□ -0.19
PTPRF-202ENST00000372405 ADGRG2Q8IZP9 1017 aa13.86□□□□□ -0.19
PTPRF-202ENST00000372405 PLD6Q8N2A8 252 aaKnown RBP13.86□□□□□ -0.19
PTPRF-202ENST00000372405 LPCAT1Q8NF37 534 aa13.86□□□□□ -0.19
PTPRF-202ENST00000372405 OR6K2Q8NGY2 324 aa13.86□□□□□ -0.19
PTPRF-202ENST00000372405 RPL10LQ96L21 214 aaKnown RBP13.86□□□□□ -0.19
PTPRF-202ENST00000372405 TBATAQ96M53 351 aa13.86□□□□□ -0.19
PTPRF-202ENST00000372405 FAM167BQ9BTA0 163 aa13.86□□□□□ -0.19
PTPRF-202ENST00000372405 BBS2Q9BXC9 721 aa13.86□□□□□ -0.19
PTPRF-202ENST00000372405 ZNF358Q9NW07 568 aa13.86□□□□□ -0.19
PTPRF-202ENST00000372405 MARCH4Q9P2E8 410 aaPredicted RBP13.86□□□□□ -0.19
PTPRF-202ENST00000372405 CDH22Q9UJ99 828 aa13.86□□□□□ -0.19
PTPRF-202ENST00000372405 RFXAPO00287 272 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 EBAG9O00559 213 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 TYRP14679 529 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 ZNF140P52738 457 aaPredicted RBP13.85□□□□□ -0.19
PTPRF-202ENST00000372405 TMPRSS15P98073 1019 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 IRF9Q00978 393 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 DGKKQ5KSL6 1271 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 N4BP2L1Q5TBK1 243 aaPredicted RBP13.85□□□□□ -0.19
PTPRF-202ENST00000372405 C6orf89Q6UWU4 347 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 PTAR1Q7Z6K3 402 aaPredicted RBP13.85□□□□□ -0.19
PTPRF-202ENST00000372405 CLEC14AQ86T13 490 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 LRRC8CQ8TDW0 803 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 RMDN1Q96DB5 314 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 MFSD1Q9H3U5 465 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 PIDD1Q9HB75 910 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 FBXO6Q9NRD1 293 aaPredicted RBP13.85□□□□□ -0.19
PTPRF-202ENST00000372405 SLC39A10Q9ULF5 831 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 A0A0U1RQS6 177 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 ANKRD66B4E2M5 251 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 TRIM24O15164 1050 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 EDF1O60869 148 aaKnown RBP13.85□□□□□ -0.19
PTPRF-202ENST00000372405 C2P06681 752 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 SRCP12931 536 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 GKP32189 559 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 SLC12A1Q13621 1099 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 CNSTQ6PJW8 725 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 LDB1Q86U70 411 aaPredicted RBP13.85□□□□□ -0.19
PTPRF-202ENST00000372405 CAMK1DQ8IU85 385 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 CILP2Q8IUL8 1156 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 SPNS2Q8IVW8 549 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 CACNA2D3Q8IZS8 1091 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 OR6P1Q8NGX9 317 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 PDCD6IPQ8WUM4 868 aaKnown RBP13.85□□□□□ -0.19
PTPRF-202ENST00000372405 PEX13Q92968 403 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 GDF15Q99988 308 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 PITPNM3Q9BZ71 974 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 NSRP1Q9H0G5 558 aaKnown RBP13.85□□□□□ -0.19
PTPRF-202ENST00000372405 TNKS2Q9H2K2 1166 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 TMEM216Q9P0N5 145 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 TBC1D14Q9P2M4 693 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 EVLQ9UI08 416 aaPredicted RBP13.85□□□□□ -0.19
PTPRF-202ENST00000372405 ZMYM5Q9UJ78 669 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 RIMKLBQ9ULI2 386 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 PHTF1Q9UMS5 762 aa13.85□□□□□ -0.19
PTPRF-202ENST00000372405 XIRP2A4UGR9 3374 aa13.84□□□□□ -0.19
PTPRF-202ENST00000372405 A0A096LPK6 155 aa13.84□□□□□ -0.19
PTPRF-202ENST00000372405 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.84□□□□□ -0.19
PTPRF-202ENST00000372405 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.84□□□□□ -0.19
PTPRF-202ENST00000372405 CCDC162PA2VCL2 907 aa13.84□□□□□ -0.19
PTPRF-202ENST00000372405 PLIN3O60664 434 aa13.84□□□□□ -0.19
PTPRF-202ENST00000372405 GLRA3O75311 464 aa13.84□□□□□ -0.19
PTPRF-202ENST00000372405 BGNP21810 368 aa13.84□□□□□ -0.19
PTPRF-202ENST00000372405 LEPRP48357 1165 aaKnown RBP13.84□□□□□ -0.19
PTPRF-202ENST00000372405 AP1S1P61966 158 aa13.84□□□□□ -0.19
PTPRF-202ENST00000372405 UGP2Q16851 508 aa13.84□□□□□ -0.19
PTPRF-202ENST00000372405 RALGPS1Q5JS13 557 aa13.84□□□□□ -0.19
PTPRF-202ENST00000372405 KYAT3Q6YP21 454 aaKnown RBP13.84□□□□□ -0.19
PTPRF-202ENST00000372405 KIAA0408Q6ZU52 694 aa13.84□□□□□ -0.19
PTPRF-202ENST00000372405 SLC41A1Q8IVJ1 513 aa13.84□□□□□ -0.19
PTPRF-202ENST00000372405 CEP97Q8IW35 865 aa13.84□□□□□ -0.19
PTPRF-202ENST00000372405 CNPY4Q8N129 248 aa13.84□□□□□ -0.19
PTPRF-202ENST00000372405 LMAN2LQ9H0V9 348 aa13.84□□□□□ -0.19
PTPRF-202ENST00000372405 MANSC1Q9H8J5 431 aa13.84□□□□□ -0.19
PTPRF-202ENST00000372405 DCDC2Q9UHG0 476 aa13.84□□□□□ -0.19
PTPRF-202ENST00000372405 GGA2Q9UJY4 613 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms