RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 MAP9Q49MG5 647 aa8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 C14orf28Q4W4Y0 310 aa8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 CARD16Q5EG05 197 aa8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 NKAIN2Q5VXU1 208 aa8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 ANKS6Q68DC2 871 aa8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 ENPP7Q6UWV6 458 aa8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 ASB18Q6ZVZ8 466 aa8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 TFAP2DQ7Z6R9 452 aa8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 FAM114A1Q8IWE2 563 aa8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 DEFB106AQ8N104 65 aa8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 BMPERQ8N8U9 685 aa8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 DCAF4L2Q8NA75 395 aa8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 SCG3Q8WXD2 468 aaKnown RBP8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 C2orf49Q9BVC5 232 aaPredicted RBP8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 TM6SF2Q9BZW4 377 aa8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 SIK2Q9H0K1 926 aa8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 FAM204AQ9H8W3 233 aa8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 GPN2Q9H9Y4 310 aaPredicted RBP8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 POPDC2Q9HBU9 364 aa8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 FGF22Q9HCT0 170 aa8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 MRPL40Q9NQ50 206 aaKnown RBP8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 CASS4Q9NQ75 786 aa8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 PRDM8Q9NQV8 689 aa8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 ST7Q9NRC1 585 aa8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 DDIT4Q9NX09 232 aa8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 MPP6Q9NZW5 540 aa8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 ERRFI1Q9UJM3 462 aaPredicted RBP8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 KIAA1257Q9ULG3 409 aa8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.58□□□□□ -1.04
HMGB1P39-201ENST00000366304 TMEM202A6NGA9 273 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 EFCAB7A8K855 629 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 M0QYT0 321 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 NEMP1O14524 444 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 CUTAO60888 179 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 VPS4BO75351 444 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 GRAP2O75791 330 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 RASGRP1O95267 797 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 CPNE6O95741 557 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 LDLRP01130 860 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 CTSEP14091 401 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 PNLIPP16233 465 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 PDCP20941 246 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 KRT83P78385 493 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 INPP5AQ14642 412 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 NFATC4Q14934 902 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 NADK2Q4G0N4 442 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 TMEM164Q5U3C3 297 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 RESP18Q5W5W9 173 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 SPECC1LQ69YQ0 1117 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 TCTN3Q6NUS6 607 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 C16orf46Q6P387 395 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 ZNF438Q7Z4V0 828 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 HEATR4Q86WZ0 1026 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 C17orf82Q86X59 251 aaPredicted RBP8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 GKN2Q86XP6 184 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 TEX19Q8NA77 164 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 NETO2Q8NC67 525 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 PLA2G15Q8NCC3 412 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 FAM46DQ8NEK8 389 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 OR6C4Q8NGE1 309 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 CPT1CQ8TCG5 803 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 PDCD6IPQ8WUM4 868 aaKnown RBP8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 STARD8Q92502 1023 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 CCDC114Q96M63 670 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 CDK15Q96Q40 435 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 SLC2A13Q96QE2 648 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 CTRCQ99895 268 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 WRAP53Q9BUR4 548 aaKnown RBP8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 DDA1Q9BW61 102 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 SRRTQ9BXP5 876 aaKnown RBP8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 TMEM168Q9H0V1 697 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 ACP6Q9NPH0 428 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 SPATS2LQ9NUQ6 558 aaKnown RBP8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 CUEDC1Q9NWM3 386 aaPredicted RBP8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 SLC39A1Q9NY26 324 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 VPS4AQ9UN37 437 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 MAP4K5Q9Y4K4 846 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 PCDHB4Q9Y5E5 795 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 ST14Q9Y5Y6 855 aa8.57□□□□□ -1.04
HMGB1P39-201ENST00000366304 DRGXA6NNA5 263 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 TTLL8A6PVC2 850 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 TCP11X1B4DZS4 312 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 HGSO14964 777 aaPredicted RBP8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 CAPN5O15484 640 aaPredicted RBP8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 NUDT21O43809 227 aaKnown RBP8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 UGT2B4P06133 528 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 NEFLP07196 543 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 TIMP2P16035 220 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 ALDH4A1P30038 563 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 CCR1P32246 355 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 LIMK2P53671 638 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 NME3Q13232 169 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 ARHGEF7Q14155 803 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 ZNF805Q5CZA5 627 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 LEKR1Q6ZMV7 388 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 TAF8Q7Z7C8 310 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 TMEM110Q86TL2 294 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 PIM3Q86V86 326 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 NRROSQ86YC3 692 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 ARHGEF19Q8IW93 802 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms