RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 KCNE1P15382 129 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 ARCN1P48444 511 aaKnown RBP12.21□□□□□ -0.46
CLIP3-201ENST00000360535 VPS26BQ4G0F5 336 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 TIGD5Q53EQ6 642 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 C14orf80Q86SX3 495 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 TLK2Q86UE8 772 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 SPPL2CQ8IUH8 684 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 ZNF786Q8N393 782 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 FAM47BQ8NA70 645 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 HMGCLL1Q8TB92 370 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 HDAC10Q969S8 669 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 C3orf30Q96M34 536 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 KCNA7Q96RP8 456 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 KATNBL1Q9H079 304 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 TMLHEQ9NVH6 421 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 ATXN10Q9UBB4 475 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 TBC1D30Q9Y2I9 924 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 RNF11Q9Y3C5 154 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 TRAF6Q9Y4K3 522 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 NCF1BA6NI72 391 aaPredicted RBP12.2□□□□□ -0.46
CLIP3-201ENST00000360535 NCF1CA8MVU1 366 aaPredicted RBP12.2□□□□□ -0.46
CLIP3-201ENST00000360535 F8W810 466 aa12.2□□□□□ -0.46
CLIP3-201ENST00000360535 GJB3O75712 270 aa12.2□□□□□ -0.46
CLIP3-201ENST00000360535 NCF1P14598 390 aaPredicted RBP12.2□□□□□ -0.46
CLIP3-201ENST00000360535 GRIK1P39086 918 aa12.2□□□□□ -0.46
CLIP3-201ENST00000360535 HADHAP40939 763 aa12.2□□□□□ -0.46
CLIP3-201ENST00000360535 STX1BP61266 288 aa12.2□□□□□ -0.46
CLIP3-201ENST00000360535 PLIN5Q00G26 463 aa12.2□□□□□ -0.46
CLIP3-201ENST00000360535 AGAP9Q5VTM2 703 aa12.2□□□□□ -0.46
CLIP3-201ENST00000360535 DCLRE1AQ6PJP8 1040 aa12.2□□□□□ -0.46
CLIP3-201ENST00000360535 AFAP1L2Q8N4X5 818 aa12.2□□□□□ -0.46
CLIP3-201ENST00000360535 FAM81AQ8TBF8 368 aa12.2□□□□□ -0.46
CLIP3-201ENST00000360535 SMARCD1Q96GM5 515 aa12.2□□□□□ -0.46
CLIP3-201ENST00000360535 SENP6Q9GZR1 1112 aaPredicted RBP12.2□□□□□ -0.46
CLIP3-201ENST00000360535 NDUFA13Q9P0J0 144 aa12.2□□□□□ -0.46
CLIP3-201ENST00000360535 SMIM35A0A1B0GVV1 85 aa12.2□□□□□ -0.46
CLIP3-201ENST00000360535 ZNF26P17031 533 aaPredicted RBP12.2□□□□□ -0.46
CLIP3-201ENST00000360535 GEMP55040 296 aa12.2□□□□□ -0.46
CLIP3-201ENST00000360535 IKBKEQ14164 716 aa12.2□□□□□ -0.46
CLIP3-201ENST00000360535 LPCAT2Q7L5N7 544 aa12.2□□□□□ -0.46
CLIP3-201ENST00000360535 GPR152Q8TDT2 470 aa12.2□□□□□ -0.46
CLIP3-201ENST00000360535 DLG3Q92796 817 aa12.2□□□□□ -0.46
CLIP3-201ENST00000360535 ASB9Q96DX5 294 aa12.2□□□□□ -0.46
CLIP3-201ENST00000360535 PRDM16Q9HAZ2 1276 aa12.2□□□□□ -0.46
CLIP3-201ENST00000360535 SPAG4Q9NPE6 437 aa12.2□□□□□ -0.46
CLIP3-201ENST00000360535 PTTG2Q9NZH5 202 aa12.2□□□□□ -0.46
CLIP3-201ENST00000360535 IPO11Q9UI26 975 aaKnown RBP12.2□□□□□ -0.46
CLIP3-201ENST00000360535 ARHGAP10A1A4S6 786 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 ANKRD33BA6NCL7 494 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 NRP2O60462 931 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 SLC5A2P31639 672 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 CCR1P32246 355 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 ECT2LQ008S8 904 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 DSC2Q02487 901 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 DHFR2Q86XF0 187 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 ARHGAP12Q8IWW6 846 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 AHI1Q8N157 1196 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 DCBLD1Q8N8Z6 715 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 BLOC1S5Q8TDH9 187 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 CYGBQ8WWM9 190 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 ZFRQ96KR1 1074 aaKnown RBP12.19□□□□□ -0.46
CLIP3-201ENST00000360535 MRGPRX2Q96LB1 330 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 UNC93B1Q9H1C4 597 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 ZNF385DQ9H6B1 395 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 IGSF5Q9NSI5 407 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 J3KR12 359 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 UBFD1O14562 309 aaKnown RBP12.19□□□□□ -0.46
CLIP3-201ENST00000360535 MAGEB3O15480 346 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 MAFKO60675 156 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 GNAO1P09471 354 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 LTA4HP09960 611 aaKnown RBP12.19□□□□□ -0.46
CLIP3-201ENST00000360535 PSEN2P49810 448 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 YBX1P67809 324 aaKnown RBP12.19□□□□□ -0.46
CLIP3-201ENST00000360535 SCAPQ12770 1279 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 PFKFB4Q16877 469 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 HECTD2Q5U5R9 776 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 BNIPLQ7Z465 357 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 CASP10Q92851 521 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 UPF3AQ9H1J1 476 aaKnown RBP12.19□□□□□ -0.46
CLIP3-201ENST00000360535 SOX17Q9H6I2 414 aaPredicted RBP12.19□□□□□ -0.46
CLIP3-201ENST00000360535 EML4Q9HC35 981 aaKnown RBP12.19□□□□□ -0.46
CLIP3-201ENST00000360535 MID1IP1Q9NPA3 183 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 CNOT6Q9ULM6 557 aaKnown RBP12.19□□□□□ -0.46
CLIP3-201ENST00000360535 SOCS2O14508 198 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 GABRDO14764 452 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 STRNO43815 780 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 LINC00032P0C843 101 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 LHX1P48742 406 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 SCNN1BP51168 640 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 ARSDP51689 593 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 NR1H2P55055 460 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 TBCELQ5QJ74 424 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 DNAJB14Q8TBM8 379 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 TUBGCP3Q96CW5 907 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 NSUN5Q96P11 429 aaKnown RBP12.19□□□□□ -0.46
CLIP3-201ENST00000360535 MCMBPQ9BTE3 642 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 MARCH4Q9P2E8 410 aaPredicted RBP12.19□□□□□ -0.46
CLIP3-201ENST00000360535 PDE4DIPQ5VU43 2346 aa12.19□□□□□ -0.46
CLIP3-201ENST00000360535 UBA6A0AVT1 1052 aaPredicted RBP12.18□□□□□ -0.46
CLIP3-201ENST00000360535 CRCPO75575 148 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms