RNA–Protein interactions for RNA: ENST00000355572.6

PDLIM7-201, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best) BASIC

Gene PDLIM7, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-201ENST00000355572 ARHGEF17Q96PE2 2063 aaPredicted RBP16.84■□□□□ 0.29
PDLIM7-201ENST00000355572 PKD1L2Q7Z442 2459 aa16.84■□□□□ 0.29
PDLIM7-201ENST00000355572 JUNDP17535 347 aa16.84■□□□□ 0.29
PDLIM7-201ENST00000355572 ARL4AP40617 200 aa16.84■□□□□ 0.29
PDLIM7-201ENST00000355572 ADKP55263 362 aaKnown RBP16.84■□□□□ 0.29
PDLIM7-201ENST00000355572 TRAF2Q12933 501 aa16.84■□□□□ 0.29
PDLIM7-201ENST00000355572 TARDBPQ13148 414 aaKnown RBP eCLIP16.84■□□□□ 0.29
PDLIM7-201ENST00000355572 TMCO4Q5TGY1 634 aa16.84■□□□□ 0.29
PDLIM7-201ENST00000355572 NCBP2-AS2Q69YL0 99 aa16.84■□□□□ 0.29
PDLIM7-201ENST00000355572 TMCO3Q6UWJ1 677 aa16.84■□□□□ 0.29
PDLIM7-201ENST00000355572 LIPIQ6XZB0 460 aa16.84■□□□□ 0.29
PDLIM7-201ENST00000355572 PHACTR4Q8IZ21 702 aa16.84■□□□□ 0.29
PDLIM7-201ENST00000355572 GALNT15Q8N3T1 639 aa16.84■□□□□ 0.29
PDLIM7-201ENST00000355572 ZNF641Q96N77 438 aaPredicted RBP16.84■□□□□ 0.29
PDLIM7-201ENST00000355572 TUBGCP5Q96RT8 1024 aa16.84■□□□□ 0.29
PDLIM7-201ENST00000355572 CCDC86Q9H6F5 360 aaKnown RBP16.84■□□□□ 0.29
PDLIM7-201ENST00000355572 SPTLC3Q9NUV7 552 aa16.84■□□□□ 0.29
PDLIM7-201ENST00000355572 NLGN3Q9NZ94 848 aa16.84■□□□□ 0.29
PDLIM7-201ENST00000355572 RAXQ9Y2V3 346 aa16.84■□□□□ 0.29
PDLIM7-201ENST00000355572 OR1A2Q9Y585 309 aa16.84■□□□□ 0.29
PDLIM7-201ENST00000355572 PCCBP05166 539 aa16.83■□□□□ 0.28
PDLIM7-201ENST00000355572 CKMT1AP12532 417 aa16.83■□□□□ 0.28
PDLIM7-201ENST00000355572 HNRNPKP61978 463 aaKnown RBP eCLIP16.83■□□□□ 0.281e-7■■■■■ 44.1
PDLIM7-201ENST00000355572 NSUN2Q08J23 767 aaKnown RBP eCLIP16.83■□□□□ 0.28
PDLIM7-201ENST00000355572 SLC10A2Q12908 348 aaPredicted RBP16.83■□□□□ 0.28
PDLIM7-201ENST00000355572 SLC18A3Q16572 532 aa16.83■□□□□ 0.28
PDLIM7-201ENST00000355572 SPECC1LQ69YQ0 1117 aa16.83■□□□□ 0.28
PDLIM7-201ENST00000355572 BRAT1Q6PJG6 821 aa16.83■□□□□ 0.28
PDLIM7-201ENST00000355572 ZSCAN30Q86W11 494 aa16.83■□□□□ 0.28
PDLIM7-201ENST00000355572 TMPRSS12Q86WS5 348 aa16.83■□□□□ 0.28
PDLIM7-201ENST00000355572 DCP2Q8IU60 420 aaKnown RBP16.83■□□□□ 0.28
PDLIM7-201ENST00000355572 SFTPA2Q8IWL1 248 aa16.83■□□□□ 0.28
PDLIM7-201ENST00000355572 PQLC3Q8N755 202 aa16.83■□□□□ 0.28
PDLIM7-201ENST00000355572 FAM174AQ8TBP5 190 aa16.83■□□□□ 0.28
PDLIM7-201ENST00000355572 HCAR2Q8TDS4 363 aa16.83■□□□□ 0.28
PDLIM7-201ENST00000355572 LMX1AQ8TE12 382 aa16.83■□□□□ 0.28
PDLIM7-201ENST00000355572 TSACCQ96A04 125 aaPredicted RBP16.83■□□□□ 0.28
PDLIM7-201ENST00000355572 IQCDQ96DY2 449 aa16.83■□□□□ 0.28
PDLIM7-201ENST00000355572 TSPY26PQ9H489 355 aa16.83■□□□□ 0.28
PDLIM7-201ENST00000355572 NOD2Q9HC29 1040 aa16.83■□□□□ 0.28
PDLIM7-201ENST00000355572 PCDHB1Q9Y5F3 818 aa16.83■□□□□ 0.28
PDLIM7-201ENST00000355572 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.83■□□□□ 0.283e-7■□□□□ 9.6
PDLIM7-201ENST00000355572 ZFC3H1O60293 1989 aaKnown RBP16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 TMEM110-MUSTN1A8MSY1 372 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 MYO1FO00160 1098 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 AQP9O43315 295 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 HTRA2O43464 458 aaPredicted RBP16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 MFAP3LO75121 409 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 PROSCO94903 275 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 C1SP09871 688 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 LHCGRP22888 699 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 XPAP23025 273 aaPredicted RBP16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 SERPINA4P29622 427 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 SSR1P43307 286 aaKnown RBP16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 ZNF135P52742 658 aaPredicted RBP16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 DAB2P98082 770 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 BCL2L1Q07817 233 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 ELP6Q0PNE2 266 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 INPP5AQ14642 412 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 RFTN1Q14699 578 aaPredicted RBP16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 AGERQ15109 404 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 ALG11Q2TAA5 492 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 PERM1Q5SV97 790 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 GUSBP11Q6P575 273 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 C19orf48Q6RUI8 117 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 MACC1Q6ZN28 852 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 RFLNAQ6ZTI6 216 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 DPPA4Q7L190 304 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 LZTR1Q8N653 840 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 RFFLQ8WZ73 363 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 CRELD1Q96HD1 420 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 NUDCD1Q96RS6 583 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 MGME1Q9BQP7 344 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 ATP13A3Q9H7F0 1226 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 ABHD10Q9NUJ1 306 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 CTTNBP2NLQ9P2B4 639 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 B4GALT6Q9UBX8 382 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 SEPT3Q9UH03 358 aa16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 APOBEC3BQ9UH17 382 aaKnown RBP16.82■□□□□ 0.28
PDLIM7-201ENST00000355572 ACACAQ13085 2346 aa16.81■□□□□ 0.28
PDLIM7-201ENST00000355572 LAMA5O15230 3695 aa16.81■□□□□ 0.28
PDLIM7-201ENST00000355572 TLX3O43711 291 aaPredicted RBP16.81■□□□□ 0.28
PDLIM7-201ENST00000355572 RECQL5O94762 991 aaPredicted RBP16.81■□□□□ 0.28
PDLIM7-201ENST00000355572 JUPP14923 745 aa16.81■□□□□ 0.28
PDLIM7-201ENST00000355572 TSHRP16473 764 aa16.81■□□□□ 0.28
PDLIM7-201ENST00000355572 PTMSP20962 102 aa16.81■□□□□ 0.28
PDLIM7-201ENST00000355572 THOP1P52888 689 aa16.81■□□□□ 0.28
PDLIM7-201ENST00000355572 KRT81Q14533 505 aa16.81■□□□□ 0.28
PDLIM7-201ENST00000355572 GRM3Q14832 879 aa16.81■□□□□ 0.28
PDLIM7-201ENST00000355572 LRRC14Q15048 493 aa16.81■□□□□ 0.28
PDLIM7-201ENST00000355572 PAFAH1B3Q15102 231 aaKnown RBP16.81■□□□□ 0.28
PDLIM7-201ENST00000355572 CNGA3Q16281 694 aa16.81■□□□□ 0.28
PDLIM7-201ENST00000355572 CDKN3Q16667 212 aa16.81■□□□□ 0.28
PDLIM7-201ENST00000355572 SKOR2Q2VWA4 1001 aaPredicted RBP16.81■□□□□ 0.28
PDLIM7-201ENST00000355572 ANKRD20A8PQ5CZ79 823 aa16.81■□□□□ 0.28
PDLIM7-201ENST00000355572 CRTC1Q6UUV9 634 aa16.81■□□□□ 0.28
PDLIM7-201ENST00000355572 ATPAF2Q8N5M1 289 aa16.81■□□□□ 0.28
PDLIM7-201ENST00000355572 OR8K1Q8NGG5 319 aa16.81■□□□□ 0.28
PDLIM7-201ENST00000355572 PTCD2Q8WV60 388 aaKnown RBP16.81■□□□□ 0.28
PDLIM7-201ENST00000355572 RAPGEF5Q92565 580 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms