RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 ACTL9Q8TC94 416 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 CTNNBL1Q8WYA6 563 aaPredicted RBP2.37□□□□□ -2.03
VPS54-202ENST00000354504 FBXW5Q969U6 566 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 NTAN1Q96AB6 310 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 PCED1BQ96HM7 432 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 FCRL2Q96LA5 508 aaPredicted RBP2.37□□□□□ -2.03
VPS54-202ENST00000354504 SERPINB12Q96P63 405 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 TSGA13Q96PP4 275 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 SPAG5Q96R06 1193 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 OSBPL1AQ9BXW6 950 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 KRTAP4-2Q9BYR5 136 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 QRSL1Q9H0R6 528 aaKnown RBP2.37□□□□□ -2.03
VPS54-202ENST00000354504 NRDE2Q9H7Z3 1164 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 TREX1Q9NSU2 369 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 ADAM22Q9P0K1 906 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 MSRAQ9UJ68 235 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 PCDHB4Q9Y5E5 795 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 TIMM13Q9Y5L4 95 aaPredicted RBP2.37□□□□□ -2.03
VPS54-202ENST00000354504 B3GALT1Q9Y5Z6 326 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 X6R8D5 127 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 E2F8A0AVK6 867 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 KPNA7A9QM74 516 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 E9PQ18 207 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 G3V2L1 256 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 SEPT4O43236 478 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 MGRN1O60291 552 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 SNX3O60493 162 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 MAFKO60675 156 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 GNAT1P11488 350 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 CKBP12277 381 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 CHN1P15882 459 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 ATF6P18850 670 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 GNAZP19086 355 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 NR1D1P20393 614 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 IFNAR2P48551 515 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 HCAR3P49019 387 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 CCNG1P51959 295 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 YWHAEP62258 255 aaKnown RBP2.37□□□□□ -2.03
VPS54-202ENST00000354504 OCRLQ01968 901 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 CREB5Q02930 508 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 GALNT2Q10471 571 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 DLG1Q12959 904 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 BNIP1Q12981 228 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 BIRC3Q13489 604 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 TMEM132DQ14C87 1099 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 MORF4L2Q15014 288 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 GOLGA7BQ2TAP0 167 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 SLC25A52Q3SY17 297 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 SPDYAQ5MJ70 313 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 C10orf62Q5T681 223 aaPredicted RBP2.37□□□□□ -2.03
VPS54-202ENST00000354504 KCTD16Q68DU8 428 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 TTC19Q6DKK2 380 aaPredicted RBP2.37□□□□□ -2.03
VPS54-202ENST00000354504 RGMBQ6NW40 437 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 TRMT10BQ6PF06 316 aaKnown RBP2.37□□□□□ -2.03
VPS54-202ENST00000354504 TMEM207Q6UWW9 146 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 STXBP4Q6ZWJ1 553 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 C16orf59Q7L2K0 433 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 STRADAQ7RTN6 431 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 ARMC9Q7Z3E5 817 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 TMEM135Q86UB9 458 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 ECHDC2Q86YB7 292 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 CCDC13Q8IYE1 715 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 THNSL1Q8IYQ7 743 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 CMTR2Q8IYT2 770 aaKnown RBP2.37□□□□□ -2.03
VPS54-202ENST00000354504 CHPFQ8IZ52 775 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 SYCP3Q8IZU3 236 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 LSMEM2Q8N112 164 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 NAT16Q8N8M0 369 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 B3GALNT2Q8NCR0 500 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 MCUQ8NE86 351 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 OR6J1Q8NGC5 347 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 IPO4Q8TEX9 1081 aaKnown RBP2.37□□□□□ -2.03
VPS54-202ENST00000354504 SLC44A1Q8WWI5 657 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 RXFP2Q8WXD0 754 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 LPPQ93052 612 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 EID2BQ96D98 161 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 ALG14Q96F25 216 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 CCT8L2Q96SF2 557 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 FMO2Q99518 471 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 MPHOSPH6Q99547 160 aaKnown RBP2.37□□□□□ -2.03
VPS54-202ENST00000354504 MENTQ9BUN1 341 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 ROPN1BQ9BZX4 212 aaPredicted RBP2.37□□□□□ -2.03
VPS54-202ENST00000354504 TWSG1Q9GZX9 223 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 ROPN1Q9HAT0 212 aaPredicted RBP2.37□□□□□ -2.03
VPS54-202ENST00000354504 ARNT2Q9HBZ2 717 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 TCF7L1Q9HCS4 588 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 C1orf112Q9NSG2 853 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 XPO7Q9UIA9 1087 aaKnown RBP2.37□□□□□ -2.03
VPS54-202ENST00000354504 SHOC2Q9UQ13 582 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 CHKBQ9Y259 395 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 OR51B4Q9Y5P0 310 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 TCRBV9S1A1TA0A576 114 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 ZC3H12DA2A288 527 aaKnown RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 MROH6A6NGR9 719 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 KLF11O14901 512 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 MUSKO15146 869 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 CHADO15335 359 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 THAP12O43422 761 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 XPOTO43592 962 aaKnown RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 OLFM2O95897 454 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms