RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 ZACNQ401N2 412 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 SH3PXD2AQ5TCZ1 1133 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 TTC23Q5W5X9 447 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 ADHFE1Q8IWW8 467 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 DLG3Q92796 817 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 HSPBAP1Q96EW2 488 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 SEMA3CQ99985 751 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 CXorf21Q9HAI6 301 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 TRPV5Q9NQA5 729 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 MTF2Q9Y483 593 aaPredicted RBP8.74□□□□□ -1.01
RTN3-202ENST00000339997 PCDHA11Q9Y5I1 949 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 ASTN2O75129 1339 aaPredicted RBP8.74□□□□□ -1.01
RTN3-202ENST00000339997 PXDNQ92626 1479 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 A0A0J9YYE9 177 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 SLC26A4O43511 780 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 PPP1R11O60927 126 aaPredicted RBP8.74□□□□□ -1.01
RTN3-202ENST00000339997 OR6B1O95007 311 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 ITGAXP20702 1163 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 ADCYAP1R1P41586 468 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 ZNF157P51786 506 aaPredicted RBP8.74□□□□□ -1.01
RTN3-202ENST00000339997 DGKEP52429 567 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 PTPN5P54829 565 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 ADAM17P78536 824 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 IRF8Q02556 426 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 CRY1Q16526 586 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 SLC39A12Q504Y0 691 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 ANKRD23Q86SG2 305 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 ANKRD46Q86W74 232 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 C2orf73Q8N5S3 287 aaPredicted RBP8.74□□□□□ -1.01
RTN3-202ENST00000339997 SETD9Q8NE22 299 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 REPS2Q8NFH8 660 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 SPATA22Q8NHS9 363 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 PREBQ9HCU5 417 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 GRHL1Q9NZI5 618 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.74□□□□□ -1.016e-7■■■■□ 22.6
RTN3-202ENST00000339997 PPM1HQ9ULR3 514 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 SESN1Q9Y6P5 492 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 C17orf102A2RUQ5 167 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 DNAJA2O60884 412 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 IFI30P13284 250 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 GRIA1P42261 906 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 IL18R1Q13478 541 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 CNPY1Q3B7I2 92 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 LACTB2Q53H82 288 aaPredicted RBP8.73□□□□□ -1.01
RTN3-202ENST00000339997 SLC9A4Q6AI14 798 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 DEFB128Q7Z7B8 93 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 ARMC8Q8IUR7 673 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 GLIS1Q8NBF1 620 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 GRIN3AQ8TCU5 1115 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 LPPQ93052 612 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 SLC4A9Q96Q91 983 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 P2RX7Q99572 595 aaKnown RBP8.73□□□□□ -1.01
RTN3-202ENST00000339997 POPDC2Q9HBU9 364 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 CMTM6Q9NX76 183 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 SLC7A8Q9UHI5 535 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 C3orf18Q9UK00 162 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 TCHHQ07283 1943 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 CLIC3O95833 236 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 CYP1A1P04798 512 aaPredicted RBP8.73□□□□□ -1.01
RTN3-202ENST00000339997 UMPSP11172 480 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 TCF4P15884 667 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 CES1P23141 567 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 KRT20P35900 424 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 NR2C2P49116 596 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 CCR4P51679 360 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 RPS6KA3P51812 740 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 RAB25P57735 213 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 RIPK1Q13546 671 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 PRAMEF19Q5SWL8 479 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 AHI1Q8N157 1196 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 TMEM132CQ8N3T6 1108 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 WNT8BQ93098 351 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 CLIP3Q96DZ5 547 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 IL22Q9GZX6 179 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 CDH19Q9H159 772 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 TRAF6Q9Y4K3 522 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 MYO10Q9HD67 2058 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 NCANO14594 1321 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 BCLAF3A2AJT9 711 aaKnown RBP8.73□□□□□ -1.01
RTN3-202ENST00000339997 TMEM191CA6NGB0 347 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 ANKDD1BA6NHY2 528 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 ULK1O75385 1050 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 LRCH4O75427 683 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 ERBB2P04626 1255 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 CHRNGP07510 517 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 RHBDL3P58872 404 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 RAB10P61026 200 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 MPP1Q00013 466 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 PRKG2Q13237 762 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 FAM171A1Q5VUB5 890 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 DENND5AQ6IQ26 1287 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 VSTM1Q6UX27 236 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 AHSA2Q719I0 299 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 CUZD1Q86UP6 607 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 IFNLR1Q8IU57 520 aaPredicted RBP8.73□□□□□ -1.01
RTN3-202ENST00000339997 CROCCP3Q8IVE0 287 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 CLIP4Q8N3C7 705 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 OR10Q1Q8NGQ4 319 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 PROX1Q92786 737 aa8.73□□□□□ -1.01
RTN3-202ENST00000339997 TMEM169Q96HH4 297 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 112.7 ms