RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 PRR23CQ6ZRP0 262 aa16■□□□□ 0.15
CCDC28A-201ENST00000332797 KIAA2013Q8IYS2 634 aa16■□□□□ 0.15
CCDC28A-201ENST00000332797 ZNF567Q8N184 647 aa16■□□□□ 0.15
CCDC28A-201ENST00000332797 C12orf50Q8NA57 414 aaPredicted RBP16■□□□□ 0.15
CCDC28A-201ENST00000332797 C1orf216Q8TAB5 229 aa16■□□□□ 0.15
CCDC28A-201ENST00000332797 ATG4AQ8WYN0 398 aa16■□□□□ 0.15
CCDC28A-201ENST00000332797 IMP4Q96G21 291 aaKnown RBP16■□□□□ 0.15
CCDC28A-201ENST00000332797 SERAC1Q96JX3 654 aa16■□□□□ 0.15
CCDC28A-201ENST00000332797 SLC6A18Q96N87 628 aa16■□□□□ 0.15
CCDC28A-201ENST00000332797 VAT1Q99536 393 aa16■□□□□ 0.15
CCDC28A-201ENST00000332797 MYOCQ99972 504 aa16■□□□□ 0.15
CCDC28A-201ENST00000332797 NUSAP1Q9BXS6 441 aaKnown RBP16■□□□□ 0.15
CCDC28A-201ENST00000332797 TDRD1Q9BXT4 1180 aaKnown RBP16■□□□□ 0.15
CCDC28A-201ENST00000332797 SLC25A51Q9H1U9 297 aa16■□□□□ 0.15
CCDC28A-201ENST00000332797 TM9SF3Q9HD45 589 aa16■□□□□ 0.15
CCDC28A-201ENST00000332797 RALGAPA1Q6GYQ0 2036 aa16■□□□□ 0.15
CCDC28A-201ENST00000332797 IGLON5A6NGN9 336 aa15.99■□□□□ 0.15
CCDC28A-201ENST00000332797 F5H423 210 aaPredicted RBP15.99■□□□□ 0.15
CCDC28A-201ENST00000332797 SLC31A1O15431 190 aa15.99■□□□□ 0.15
CCDC28A-201ENST00000332797 MMP20O60882 483 aa15.99■□□□□ 0.15
CCDC28A-201ENST00000332797 STK10O94804 968 aaKnown RBP15.99■□□□□ 0.15
CCDC28A-201ENST00000332797 ATP1A1P05023 1023 aaKnown RBP15.99■□□□□ 0.15
CCDC28A-201ENST00000332797 PDHA1P08559 390 aa15.99■□□□□ 0.15
CCDC28A-201ENST00000332797 CD68P34810 354 aaPredicted RBP15.99■□□□□ 0.15
CCDC28A-201ENST00000332797 NUDT1P36639 197 aa15.99■□□□□ 0.15
CCDC28A-201ENST00000332797 MMP12P39900 470 aa15.99■□□□□ 0.15
CCDC28A-201ENST00000332797 TMEM52BQ4KMG9 183 aa15.99■□□□□ 0.15
CCDC28A-201ENST00000332797 SLC23A3Q6PIS1 610 aa15.99■□□□□ 0.15
CCDC28A-201ENST00000332797 PID1Q7Z2X4 250 aa15.99■□□□□ 0.15
CCDC28A-201ENST00000332797 GPR161Q8N6U8 529 aaKnown RBP15.99■□□□□ 0.15
CCDC28A-201ENST00000332797 SPATA22Q8NHS9 363 aa15.99■□□□□ 0.15
CCDC28A-201ENST00000332797 FSCN3Q9NQT6 498 aa15.99■□□□□ 0.15
CCDC28A-201ENST00000332797 AASDHPPTQ9NRN7 309 aa15.99■□□□□ 0.15
CCDC28A-201ENST00000332797 TRHDEQ9UKU6 1024 aa15.99■□□□□ 0.15
CCDC28A-201ENST00000332797 PHTF1Q9UMS5 762 aa15.99■□□□□ 0.15
CCDC28A-201ENST00000332797 DMTF1Q9Y222 760 aa15.99■□□□□ 0.15
CCDC28A-201ENST00000332797 CHKBQ9Y259 395 aa15.99■□□□□ 0.15
CCDC28A-201ENST00000332797 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.99■□□□□ 0.15
CCDC28A-201ENST00000332797 A8MX80 341 aa15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 PRR5-ARHGAP8B1AHC4 643 aa15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 FGGP02679 453 aa15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 CTPS1P17812 591 aa15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 AFF3P51826 1226 aaKnown RBP15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 EPHB1P54762 984 aa15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 IRX4P78413 519 aa15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 SGCGQ13326 291 aa15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 AASDHQ4L235 1098 aaPredicted RBP15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 NAPEPLDQ6IQ20 393 aa15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 LAYNQ6UX15 382 aa15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 DPPA4Q7L190 304 aa15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 ZSCAN30Q86W11 494 aa15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 SLC35B2Q8TB61 432 aa15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 C1orf54Q8WWF1 131 aa15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 SPOCK2Q92563 424 aa15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 SLC17A9Q9BYT1 436 aa15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 PCDH9Q9HC56 1237 aa15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 CAPN10Q9HC96 672 aa15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 FZD3Q9NPG1 666 aa15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 B4GALT6Q9UBX8 382 aa15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 RSPH14Q9UHP6 348 aa15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 DNPEPQ9ULA0 475 aa15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 SLC6A14Q9UN76 642 aa15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 EP300Q09472 2414 aaPredicted RBP15.98■□□□□ 0.15
CCDC28A-201ENST00000332797 PRAMEF26H0Y7S4 382 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 WNT9AO14904 365 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 FZD6O60353 706 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 ZNF189O75820 626 aaPredicted RBP15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 MT-CYBP00156 380 aaPredicted RBP15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 HNRNPA2B1P22626 353 aaKnown RBP15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 NFKBIAP25963 317 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 AKT2P31751 481 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 CSNK1EP49674 416 aaKnown RBP15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 LIG3P49916 1009 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 GNG11P61952 73 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 RACK1P63244 317 aaKnown RBP15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 RALGDSQ12967 914 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 FGL2Q14314 439 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 TEAD4Q15561 434 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 PCSK7Q16549 785 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 LONRF2Q1L5Z9 754 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 ITPRIPL1Q6GPH6 555 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 USP45Q70EL2 814 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 C17orf53Q8N3J3 647 aaPredicted RBP15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 FAM71DQ8N9W8 422 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 LPCAT1Q8NF37 534 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 PIH1D2Q8WWB5 315 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 FRMD8P1Q9BZ68 369 aaPredicted RBP15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 UBP1Q9NZI7 540 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 CA5BQ9Y2D0 317 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 COQ6Q9Y2Z9 468 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 GON4LQ3T8J9 2241 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 A0A1B0GVT2 93 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 LNP1A1A4G5 178 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 LIASO43766 372 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 FOXD2O60548 495 aaPredicted RBP15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 PMPCBO75439 489 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 TM7SF2O76062 418 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 PAK4O96013 591 aaPredicted RBP15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 PRLP01236 227 aa15.97■□□□□ 0.15
CCDC28A-201ENST00000332797 ALPIP09923 528 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms