RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 CCDC126Q96EE4 140 aa7.84□□□□□ -1.15
SCN9A-201ENST00000303354 HMCESQ96FZ2 354 aa7.84□□□□□ -1.15
SCN9A-201ENST00000303354 TMEM79Q9BSE2 394 aa7.84□□□□□ -1.15
SCN9A-201ENST00000303354 TMEM134Q9H6X4 195 aa7.84□□□□□ -1.15
SCN9A-201ENST00000303354 CTPS2Q9NRF8 586 aa7.84□□□□□ -1.15
SCN9A-201ENST00000303354 E9PCH4 1651 aa7.84□□□□□ -1.15
SCN9A-201ENST00000303354 CCDC189A1A4V9 331 aa7.84□□□□□ -1.15
SCN9A-201ENST00000303354 CFAP73A6NFT4 308 aa7.84□□□□□ -1.15
SCN9A-201ENST00000303354 CDK14O94921 469 aa7.84□□□□□ -1.15
SCN9A-201ENST00000303354 LSM8O95777 96 aaKnown RBP7.84□□□□□ -1.15
SCN9A-201ENST00000303354 NUP107P57740 925 aa7.84□□□□□ -1.15
SCN9A-201ENST00000303354 SLC30A9Q6PML9 568 aa7.84□□□□□ -1.15
SCN9A-201ENST00000303354 MOXD1Q6UVY6 613 aa7.84□□□□□ -1.15
SCN9A-201ENST00000303354 EXOSC8Q96B26 276 aaKnown RBP7.84□□□□□ -1.15
SCN9A-201ENST00000303354 YIPF4Q9BSR8 244 aa7.84□□□□□ -1.15
SCN9A-201ENST00000303354 SMIM28A0A1B0GU29 152 aa7.84□□□□□ -1.16
SCN9A-201ENST00000303354 SLC38A8A6NNN8 435 aa7.84□□□□□ -1.16
SCN9A-201ENST00000303354 GPR25O00155 361 aa7.84□□□□□ -1.16
SCN9A-201ENST00000303354 DNALI1O14645 258 aaPredicted RBP7.84□□□□□ -1.16
SCN9A-201ENST00000303354 LRP8Q14114 963 aa7.84□□□□□ -1.16
SCN9A-201ENST00000303354 PAGE2BQ5JRK9 111 aa7.84□□□□□ -1.16
SCN9A-201ENST00000303354 TSTD1Q8NFU3 115 aa7.84□□□□□ -1.16
SCN9A-201ENST00000303354 SERPINB12Q96P63 405 aa7.84□□□□□ -1.16
SCN9A-201ENST00000303354 OXCT2Q9BYC2 517 aaPredicted RBP7.84□□□□□ -1.16
SCN9A-201ENST00000303354 ERVK-11Q9UQG0 969 aa7.84□□□□□ -1.16
SCN9A-201ENST00000303354 C2orf71A6NGG8 1288 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 IDH3BO43837 385 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 SIN3BO75182 1162 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 CCNYL3P0C7X3 344 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 PPM1AP35813 382 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 MAPK8P45983 427 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 DGKGP49619 791 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 TRIM71Q2Q1W2 868 aaKnown RBP7.83□□□□□ -1.16
SCN9A-201ENST00000303354 WDR93Q6P2C0 686 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 SGSM3Q96HU1 749 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 NKX2-4Q9H2Z4 354 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 BCAS3Q9H6U6 928 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 TIMM22Q9Y584 194 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 PPRC1Q5VV67 1664 aaKnown RBP7.83□□□□□ -1.16
SCN9A-201ENST00000303354 CEMIPQ8WUJ3 1361 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 PPP1R11O60927 126 aaPredicted RBP7.83□□□□□ -1.16
SCN9A-201ENST00000303354 FTH1P02794 183 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 CYP4B1P13584 511 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 DMTNQ08495 405 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 PARP6Q2NL67 630 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 VARS2Q5ST30 1063 aaKnown RBP7.83□□□□□ -1.16
SCN9A-201ENST00000303354 SLC22A9Q8IVM8 553 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 CPNE1Q99829 537 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 DGCR6LQ9BY27 220 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 ARHGEF4Q9NR80 690 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 GTF2IRD1Q9UHL9 959 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 WNT6Q9Y6F9 365 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 KPNA5O15131 536 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 MT-CYBP00156 380 aaPredicted RBP7.83□□□□□ -1.16
SCN9A-201ENST00000303354 GP5P40197 560 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 ZNF132P52740 706 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 PTENP60484 403 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 MAMLD1Q13495 774 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 ANO7Q6IWH7 933 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 SCUBE1Q8IWY4 988 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 LRRN4CLQ8ND94 238 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 ZNF296Q8WUU4 475 aaPredicted RBP7.83□□□□□ -1.16
SCN9A-201ENST00000303354 DMGDHQ9UI17 866 aaKnown RBP7.83□□□□□ -1.16
SCN9A-201ENST00000303354 U3KQV3 271 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 TK2O00142 265 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 RIPK2O43353 540 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 OR1F1O43749 312 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 KCNA5P22460 613 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 IGFALSP35858 605 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 TAS2R40P59535 323 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 ZNF155Q12901 538 aaPredicted RBP7.83□□□□□ -1.16
SCN9A-201ENST00000303354 GNA13Q14344 377 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 NCF4Q15080 339 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 FAM110CQ1W6H9 321 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 ARSJQ5FYB0 599 aaPredicted RBP7.83□□□□□ -1.16
SCN9A-201ENST00000303354 NT5DC1Q5TFE4 455 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 PIK3R6Q5UE93 754 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 HPS6Q86YV9 775 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 LNX1Q8TBB1 728 aaPredicted RBP7.83□□□□□ -1.16
SCN9A-201ENST00000303354 DOK4Q8TEW6 326 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 A0A088AWK7 358 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 KCNH1O95259 989 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 ZNF10P21506 573 aaPredicted RBP7.83□□□□□ -1.16
SCN9A-201ENST00000303354 CREMQ03060 361 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 ZNF542PQ5EBM4 170 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 NEPROQ6NW34 567 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 LRIG3Q6UXM1 1119 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 GALNT13Q8IUC8 556 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 UBE2Q2Q8WVN8 375 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 EBF3Q9H4W6 596 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 CROTQ9UKG9 612 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 ABCA9Q8IUA7 1624 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 HLA-EP13747 358 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 MARCKSL1P49006 195 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 MANFP55145 182 aaKnown RBP7.83□□□□□ -1.16
SCN9A-201ENST00000303354 NOMO3P69849 1222 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 NOMO1Q15155 1222 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 SNX32Q86XE0 403 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 ZDHHC17Q8IUH5 632 aa7.83□□□□□ -1.16
SCN9A-201ENST00000303354 OR4K2Q8NGD2 314 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms