RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 PDGFRAP16234 1089 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 FASP25445 335 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 PHKA2P46019 1235 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 ACLYP53396 1101 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 MVKQ03426 396 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 SNX32Q86XE0 403 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 DAW1Q8N136 415 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 KBTBD7Q8WVZ9 684 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 DPF1Q92782 380 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 KLF6Q99612 283 aaPredicted RBP6.45□□□□□ -1.38
VPS35-201ENST00000299138 ZNF350Q9GZX5 532 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 PORCNQ9H237 461 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 METTL8Q9H825 291 aaKnown RBP6.45□□□□□ -1.38
VPS35-201ENST00000299138 SP140LQ9H930 580 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 ZNF451Q9Y4E5 1061 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 SIN3BO75182 1162 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 ULK1O75385 1050 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 ANXA9O76027 345 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 RPLP2P05387 115 aaKnown RBP6.45□□□□□ -1.38
VPS35-201ENST00000299138 NFICP08651 508 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 HCAR3P49019 387 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 ITGA1P56199 1179 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 GPX6P59796 221 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 RHDQ02161 417 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 PTPN11Q06124 597 aaPredicted RBP6.45□□□□□ -1.38
VPS35-201ENST00000299138 USP4Q13107 963 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 SNAPC2Q13487 334 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 KCNT1Q5JUK3 1230 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 FAAH2Q6GMR7 532 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 UBR7Q8N806 425 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 MZB1Q8WU39 189 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 DMRTB1Q96MA1 342 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 CYP2S1Q96SQ9 504 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 TRIM54Q9BYV2 358 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 DSN1Q9H410 356 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 TASP1Q9H6P5 420 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 ETNK2Q9NVF9 386 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 A0A087X1B8 175 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 TMCC2O75069 709 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 PGK1P00558 417 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 NR3C2P08235 984 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 GNAO1P09471 354 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 PDGFRBP09619 1106 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 DBTP11182 482 aaKnown RBP6.44□□□□□ -1.38
VPS35-201ENST00000299138 ICAM3P32942 547 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 SCNN1BP51168 640 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 GMFBP60983 142 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 CHRNB3Q05901 458 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 CAMK1Q14012 370 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 NIPAL1Q6NVV3 410 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 TTC23LQ6PF05 361 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 STRADAQ7RTN6 431 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 TBC1D21Q8IYX1 336 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 SVOPQ8N4V2 548 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 TTLL6Q8N841 843 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 CPA5Q8WXQ8 436 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 TOR4AQ9NXH8 423 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 CLIC5Q9NZA1 410 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 ACOT9Q9Y305 439 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 ZSCAN5BA6NJL1 495 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 FAM155AB1AL88 458 aaPredicted RBP6.44□□□□□ -1.38
VPS35-201ENST00000299138 H0YAE9 185 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 C4BPAP04003 597 aaKnown RBP6.44□□□□□ -1.38
VPS35-201ENST00000299138 YBX3P16989 372 aaKnown RBP eCLIP6.44□□□□□ -1.381e-6■■□□□ 12.5
VPS35-201ENST00000299138 SSTR1P30872 391 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 MYBPC3Q14896 1274 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 APOBEC3HQ6NTF7 200 aaKnown RBP6.44□□□□□ -1.38
VPS35-201ENST00000299138 POTEHQ6S545 545 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 GTF3C2Q8WUA4 911 aaPredicted RBP6.44□□□□□ -1.38
VPS35-201ENST00000299138 TRUB1Q8WWH5 349 aaKnown RBP6.44□□□□□ -1.38
VPS35-201ENST00000299138 CCDC74AQ96AQ1 378 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 PFDN5Q99471 154 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 RBBP8Q99708 897 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 BDH2Q9BUT1 245 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 NIFKQ9BYG3 293 aaKnown RBP6.44□□□□□ -1.38
VPS35-201ENST00000299138 ENOPH1Q9UHY7 261 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 USP18Q9UMW8 372 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 CNTNAP1P78357 1384 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 FAM172BPA6NC97 362 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 AP3D1O14617 1153 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 BUD23O43709 281 aaKnown RBP6.44□□□□□ -1.38
VPS35-201ENST00000299138 PRIM2P49643 509 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 CCT8P50990 548 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 LIMK2P53671 638 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 EN1Q05925 392 aaPredicted RBP6.44□□□□□ -1.38
VPS35-201ENST00000299138 ZNF846Q147U1 533 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 N4BP2L1Q5TBK1 243 aaPredicted RBP6.44□□□□□ -1.38
VPS35-201ENST00000299138 DENND5AQ6IQ26 1287 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 ZNF574Q6ZN55 896 aaPredicted RBP6.44□□□□□ -1.38
VPS35-201ENST00000299138 Q6ZNX1 250 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 VSIG10LQ86VR7 867 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 WDR18Q9BV38 432 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 SLC6A15Q9H2J7 730 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 SPAG4Q9NPE6 437 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 RGS18Q9NS28 235 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 GPN3Q9UHW5 284 aaPredicted RBP6.44□□□□□ -1.38
VPS35-201ENST00000299138 COQ6Q9Y2Z9 468 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 KIAA1551Q9HCM1 1747 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 FAM237BA0A1B0GVD1 139 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 M0R036 132 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms