RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 PRSS51A0A1B0GVH4 220 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 SMIM31A0A1B0GVY4 71 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 PRORSD1PA6NEY8 169 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 ZNF839A8K0R7 811 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 TARM1B6A8C7 271 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 TIPRLO75663 272 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 ASLP04424 464 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 HOXC8P31273 242 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 PGFP49763 221 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 SLC12A2P55011 1212 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 CDH13P55290 713 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 MAXP61244 160 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 BEX3Q00994 111 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 GALNT2Q10471 571 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 PRPSAP1Q14558 356 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 UBXN11Q5T124 520 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 NAPEPLDQ6IQ20 393 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 PKN3Q6P5Z2 889 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 CCDC80Q76M96 950 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 SMG8Q8ND04 991 aaKnown RBP10.13□□□□□ -0.79
LIG3-201ENST00000262327 SCAMP5Q8TAC9 235 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 HDAC11Q96DB2 347 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 OLFM1Q99784 485 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 TBL1YQ9BQ87 522 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 MPP6Q9NZW5 540 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 PCDHGA7Q9Y5G6 932 aa10.13□□□□□ -0.79
LIG3-201ENST00000262327 FAM149AA5PLN7 773 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 FBP2O00757 339 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 TNFAIP8O95379 198 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 CCDC166P0CW27 439 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 PRKAR2AP13861 404 aaKnown RBP10.12□□□□□ -0.79
LIG3-201ENST00000262327 BDNFP23560 247 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 CST5P28325 142 aaPredicted RBP10.12□□□□□ -0.79
LIG3-201ENST00000262327 YBX1P67809 324 aaKnown RBP10.12□□□□□ -0.79
LIG3-201ENST00000262327 SULT2A1Q06520 285 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 PCBP1Q15365 356 aaKnown RBP eCLIP10.12□□□□□ -0.79
LIG3-201ENST00000262327 ARL13BQ3SXY8 428 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 CCDC92Q53HC0 331 aaPredicted RBP10.12□□□□□ -0.79
LIG3-201ENST00000262327 BNIPLQ7Z465 357 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 TICAM1Q8IUC6 712 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 C3orf58Q8NDZ4 430 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 RAET1EQ8TD07 263 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 CCDC28BQ9BUN5 200 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 SENP6Q9GZR1 1112 aaPredicted RBP10.12□□□□□ -0.79
LIG3-201ENST00000262327 HSFX1Q9UBD0 423 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 RAB26Q9ULW5 256 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 RNF11Q9Y3C5 154 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 AP4S1Q9Y587 144 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 OR51F1A6NGY5 319 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 PPP6CO00743 305 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 GPC4O75487 556 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 SEC24DO94855 1032 aaPredicted RBP10.12□□□□□ -0.79
LIG3-201ENST00000262327 SLC4A1P02730 911 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 HNRNPCP07910 306 aaKnown RBP eCLIP10.12□□□□□ -0.79
LIG3-201ENST00000262327 PIM1P11309 404 aaPredicted RBP10.12□□□□□ -0.79
LIG3-201ENST00000262327 PSMC3P17980 439 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 CLCNKBP51801 687 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 TRIM32Q13049 653 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 FASTKQ14296 549 aaKnown RBP10.12□□□□□ -0.79
LIG3-201ENST00000262327 GNASQ5JWF2 1037 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 B3GNT6Q6ZMB0 384 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 NCCRP1Q6ZVX7 275 aaPredicted RBP10.12□□□□□ -0.79
LIG3-201ENST00000262327 CPSF7Q8N684 471 aaKnown RBP10.12□□□□□ -0.79
LIG3-201ENST00000262327 SPPL2BQ8TCT7 592 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 SNRNP27Q8WVK2 155 aaKnown RBP10.12□□□□□ -0.79
LIG3-201ENST00000262327 GAD1Q99259 594 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 KIFC1Q9BW19 673 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 FSD1LQ9BXM9 530 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 MRPL46Q9H2W6 279 aaKnown RBP10.12□□□□□ -0.79
LIG3-201ENST00000262327 EPS15L1Q9UBC2 864 aa10.12□□□□□ -0.79
LIG3-201ENST00000262327 TRIP12Q14669 1992 aaPredicted RBP10.12□□□□□ -0.79
LIG3-201ENST00000262327 MAGEB16A2A368 324 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 C17orf102A2RUQ5 167 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 LRRC14BA6NHZ5 514 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 SAC3D1A6NKF1 404 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 ADAMTS4O75173 837 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 H2AFYO75367 372 aaKnown RBP10.11□□□□□ -0.79
LIG3-201ENST00000262327 ZNF26P17031 533 aaPredicted RBP10.11□□□□□ -0.79
LIG3-201ENST00000262327 SLC5A2P31639 672 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 ITKQ08881 620 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 PCID2Q5JVF3 399 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 REP15Q6BDI9 236 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 DENND5AQ6IQ26 1287 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 PIM3Q86V86 326 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 HERC6Q8IVU3 1022 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 ATPAF2Q8N5M1 289 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 TRIML2Q8N7C3 387 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 SLAIN1Q8ND83 568 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 KLHDC9Q8NEP7 349 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 ADCY4Q8NFM4 1077 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 ANKRD49Q8WVL7 239 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 ABTB1Q969K4 478 aaPredicted RBP10.11□□□□□ -0.79
LIG3-201ENST00000262327 CCT7Q99832 543 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 TMEM79Q9BSE2 394 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 NACA2Q9H009 215 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 MIOSQ9NXC5 875 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 NCKIPSDQ9NZQ3 722 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 EGFL7Q9UHF1 273 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 MID2Q9UJV3 735 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 FBXO5Q9UKT4 447 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms