RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 APOL2Q9BQE5 337 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 FGFR3P22607 806 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 ALDH18A1P54886 795 aaKnown RBP13.73□□□□□ -0.21
LDLR-201ENST00000252444 SERINC3Q13530 473 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 KRT80Q6KB66 452 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 KIAA1324Q6UXG2 1013 aaKnown RBP13.73□□□□□ -0.21
LDLR-201ENST00000252444 RRM2BQ7LG56 351 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 CHCHD4Q8N4Q1 142 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 OR2W6PQ8NHA6 318 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 SLC35B2Q8TB61 432 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 DDX1Q92499 740 aaKnown RBP13.73□□□□□ -0.21
LDLR-201ENST00000252444 TRMT2BQ96GJ1 504 aaKnown RBP13.73□□□□□ -0.21
LDLR-201ENST00000252444 TRMT61BQ9BVS5 477 aaKnown RBP13.73□□□□□ -0.21
LDLR-201ENST00000252444 FANCEQ9HB96 536 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 ZMYND8Q9ULU4 1186 aaPredicted RBP13.73□□□□□ -0.21
LDLR-201ENST00000252444 COLEC10Q9Y6Z7 277 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 C8GP07360 202 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 CBSLP0DN79 551 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 CBSP35520 551 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 MMRN1Q13201 1228 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 RNASEH2BQ5TBB1 312 aaKnown RBP13.72□□□□□ -0.21
LDLR-201ENST00000252444 CCDC185Q8N715 623 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 ANKRD27Q96NW4 1050 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 RNF39Q9H2S5 420 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 ACP6Q9NPH0 428 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 TDP1Q9NUW8 608 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 KIF17Q9P2E2 1029 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 MEI4A8MW99 385 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 SLC35G4P0C7Q5 338 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 ACRP10323 421 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 NUDT1P36639 197 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 SLC26A3P40879 764 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 UBXN11Q5T124 520 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 MILR1Q7Z6M3 343 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 CYP4Z1Q86W10 505 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 SPOCK2Q92563 424 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 SMOQ99835 787 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 PDZK1P1A8MUH7 402 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 MGEA5O60502 916 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 PPIBP23284 216 aaKnown RBP13.72□□□□□ -0.21
LDLR-201ENST00000252444 DPP6P42658 865 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.72□□□□□ -0.21
LDLR-201ENST00000252444 SYCP2LQ5T4T6 812 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 SDHAF4Q5VUM1 108 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 SLC44A1Q8WWI5 657 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 ZNF641Q96N77 438 aaPredicted RBP13.72□□□□□ -0.21
LDLR-201ENST00000252444 PSMD12O00232 456 aaPredicted RBP13.72□□□□□ -0.21
LDLR-201ENST00000252444 DAB2IPQ5VWQ8 1189 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 R3HCC1LQ7Z5L2 792 aaKnown RBP13.72□□□□□ -0.21
LDLR-201ENST00000252444 ARL14EPQ8N8R7 260 aaPredicted RBP13.72□□□□□ -0.21
LDLR-201ENST00000252444 CXorf40BQ96DE9 158 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 UBP1Q9NZI7 540 aa13.72□□□□□ -0.21
LDLR-201ENST00000252444 G3BP2Q9UN86 482 aaKnown RBP13.72□□□□□ -0.21
LDLR-201ENST00000252444 UBDO15205 165 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 TSTD2Q5T7W7 516 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 ARID3BQ8IVW6 561 aaPredicted RBP13.71□□□□□ -0.21
LDLR-201ENST00000252444 NSUN3Q9H649 340 aaKnown RBP13.71□□□□□ -0.21
LDLR-201ENST00000252444 PSME2Q9UL46 239 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 MSI1O43347 362 aaKnown RBP13.71□□□□□ -0.21
LDLR-201ENST00000252444 IL1BP01584 269 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 WEE1P30291 646 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 MC4RP32245 332 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 MS4A13Q5J8X5 152 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 BHLHB9Q6PI77 547 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 PACS1Q6VY07 963 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 ANKRD33Q7Z3H0 272 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 SRFBP1Q8NEF9 429 aaKnown RBP13.71□□□□□ -0.21
LDLR-201ENST00000252444 LGMNQ99538 433 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 ROGDIQ9GZN7 287 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 TELO2Q9Y4R8 837 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 RGSL1A5PLK6 1076 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 BTN3A1O00481 513 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 EDN1P05305 212 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 ITGA2BP08514 1039 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 SERPINB1P30740 379 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 GJA8P48165 433 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 PPARDQ03181 441 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 FAM171BQ6P995 826 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 C11orf74Q86VG3 221 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 ZNF784Q8NCA9 323 aaPredicted RBP13.71□□□□□ -0.21
LDLR-201ENST00000252444 POF1BQ8WVV4 589 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 VPS33AQ96AX1 596 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 FAM161BQ96MY7 647 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 PRRG3Q9BZD7 231 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 SYBUQ9NX95 663 aa13.71□□□□□ -0.21
LDLR-201ENST00000252444 TLX1P31314 330 aaPredicted RBP13.71□□□□□ -0.22
LDLR-201ENST00000252444 FMO4P31512 558 aa13.71□□□□□ -0.22
LDLR-201ENST00000252444 RPL14P50914 215 aaKnown RBP13.71□□□□□ -0.22
LDLR-201ENST00000252444 SLC25A11Q02978 314 aaKnown RBP13.71□□□□□ -0.22
LDLR-201ENST00000252444 LIPMQ5VYY2 423 aa13.71□□□□□ -0.22
LDLR-201ENST00000252444 SLC25A23Q9BV35 468 aa13.71□□□□□ -0.22
LDLR-201ENST00000252444 CRTAC1Q9NQ79 661 aa13.71□□□□□ -0.22
LDLR-201ENST00000252444 WDR70Q9NW82 654 aa13.71□□□□□ -0.22
LDLR-201ENST00000252444 PKMP14618 531 aaKnown RBP13.71□□□□□ -0.22
LDLR-201ENST00000252444 EPB42P16452 691 aa13.71□□□□□ -0.22
LDLR-201ENST00000252444 PPP2R1BP30154 601 aa13.71□□□□□ -0.22
LDLR-201ENST00000252444 CRHR1P34998 444 aa13.71□□□□□ -0.22
LDLR-201ENST00000252444 ECT2LQ008S8 904 aa13.71□□□□□ -0.22
LDLR-201ENST00000252444 FAAP100Q0VG06 881 aa13.71□□□□□ -0.22
LDLR-201ENST00000252444 TRAPPC5Q8IUR0 188 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms