RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 CLGNO14967 610 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 THRAP10827 490 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 KCNE1P15382 129 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 DIO3P55073 304 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 PLIN5Q00G26 463 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 PPP1R8Q12972 351 aaKnown RBP10.76□□□□□ -0.69
USP28-201ENST00000003302 ZNF549Q6P9A3 640 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 PGAM4Q8N0Y7 254 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 PGBD5Q8N414 524 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 VPS33AQ96AX1 596 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 ADARB2Q9NS39 739 aaKnown RBP10.76□□□□□ -0.69
USP28-201ENST00000003302 RHBDL2Q9NX52 303 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 CAPN3P20807 821 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 WARSP23381 471 aaKnown RBP10.76□□□□□ -0.69
USP28-201ENST00000003302 GALK1P51570 392 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 EMP3P54852 163 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 CCNA1P78396 465 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 TLK2Q86UE8 772 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 CUZD1Q86UP6 607 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 HERC6Q8IVU3 1022 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 CHERPQ8IWX8 916 aaKnown RBP10.76□□□□□ -0.69
USP28-201ENST00000003302 MAELQ96JY0 434 aaKnown RBP10.76□□□□□ -0.69
USP28-201ENST00000003302 TNIP3Q96KP6 325 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 TBL1YQ9BQ87 522 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 GSTO2Q9H4Y5 243 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 STN1Q9H668 368 aaKnown RBP10.76□□□□□ -0.69
USP28-201ENST00000003302 TREX1Q9NSU2 369 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 EBF1Q9UH73 591 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 CDC14AQ9UNH5 594 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 TDRKHQ9Y2W6 561 aaKnown RBP10.76□□□□□ -0.69
USP28-201ENST00000003302 KLHL33A6NCF5 533 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 ARL5CA6NH57 179 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 DENRO43583 198 aaKnown RBP10.76□□□□□ -0.69
USP28-201ENST00000003302 ASLP04424 464 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 STMN1P16949 149 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 ADRA1AP35348 466 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 GRIA3P42263 894 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 ACADSBP45954 432 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 IKBKEQ14164 716 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 TECRLQ5HYJ1 363 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 UGT3A1Q6NUS8 523 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 SCD5Q86SK9 330 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 EXOC8Q8IYI6 725 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 EME1Q96AY2 570 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 HSPBAP1Q96EW2 488 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 CAAP1Q9H8G2 361 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 NCKIPSDQ9NZQ3 722 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 RCOR3Q9P2K3 495 aaPredicted RBP10.76□□□□□ -0.69
USP28-201ENST00000003302 TIMM22Q9Y584 194 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 ARL5AQ9Y689 179 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 DOCK4Q8N1I0 1966 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 CASP8AP2Q9UKL3 1982 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 RBM47A0AV96 593 aaKnown RBP10.75□□□□□ -0.69
USP28-201ENST00000003302 NME4O00746 187 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 CABYRO75952 493 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 B3GAT3O94766 335 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 MMP2P08253 660 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 CPB1P15086 417 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 APOFQ13790 326 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 MFSD10Q14728 455 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 RABL3Q5HYI8 236 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 PM20D1Q6GTS8 502 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 IFNEQ86WN2 208 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 RP9Q8TA86 221 aaKnown RBP10.75□□□□□ -0.69
USP28-201ENST00000003302 APBB2Q92870 758 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 FBXL20Q96IG2 436 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 NAT9Q9BTE0 207 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 ZBED2Q9BTP6 218 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 FAM192AQ9GZU8 254 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 LMCD1Q9NZU5 365 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 GREB1Q4ZG55 1949 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 FXYD1O00168 92 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 TIMM44O43615 452 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 MPOP05164 745 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 CDH2P19022 906 aaPredicted RBP10.75□□□□□ -0.69
USP28-201ENST00000003302 CD247P20963 164 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 CD86P42081 329 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 SCAPQ12770 1279 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 FSCBQ5H9T9 825 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 PIK3R6Q5UE93 754 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 SPPL2CQ8IUH8 684 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 OR13C4Q8NGS5 318 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 JADE3Q92613 823 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 TMEM74Q96NL1 305 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 SLC30A3Q99726 388 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 CENPKQ9BS16 269 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 DNAJC15Q9Y5T4 150 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 CEPT1Q9Y6K0 416 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 TRIM24O15164 1050 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 MYL3P08590 195 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 SLC12A1Q13621 1099 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 RANBP10Q6VN20 620 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 CHSY3Q70JA7 882 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 CPSF7Q8N684 471 aaKnown RBP10.75□□□□□ -0.69
USP28-201ENST00000003302 KCTD13Q8WZ19 329 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 EXOC2Q96KP1 924 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 GLOD4Q9HC38 313 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 VTA1Q9NP79 307 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 ST3GAL5Q9UNP4 418 aa10.75□□□□□ -0.69
USP28-201ENST00000003302 PPP2R3BQ9Y5P8 575 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms