RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 WAPLQ7Z5K2 1190 aa6.1□□□□□ -1.43
SCN1A-218ENST00000640036 PPP4R2Q9NY27 417 aa6.1□□□□□ -1.43
SCN1A-218ENST00000640036 B4DLN1 442 aa6.1□□□□□ -1.43
SCN1A-218ENST00000640036 MRPL12P52815 198 aaKnown RBP6.1□□□□□ -1.43
SCN1A-218ENST00000640036 NLRP3Q96P20 1036 aa6.1□□□□□ -1.43
SCN1A-218ENST00000640036 PRKAG2Q9UGJ0 569 aa6.1□□□□□ -1.43
SCN1A-218ENST00000640036 CCNL1Q9UK58 526 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-218ENST00000640036 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.09□□□□□ -1.43
SCN1A-218ENST00000640036 ABCA10Q8WWZ4 1543 aa6.09□□□□□ -1.43
SCN1A-218ENST00000640036 KDM6BO15054 1643 aa6.09□□□□□ -1.43
SCN1A-218ENST00000640036 IL2RBP14784 551 aa6.09□□□□□ -1.43
SCN1A-218ENST00000640036 TPTE2Q6XPS3 522 aa6.09□□□□□ -1.43
SCN1A-218ENST00000640036 DRC1Q96MC2 740 aa6.09□□□□□ -1.43
SCN1A-218ENST00000640036 AMER1Q5JTC6 1135 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-218ENST00000640036 HDGFL1Q5TGJ6 251 aa6.09□□□□□ -1.43
SCN1A-218ENST00000640036 ARHGEF11O15085 1522 aa6.09□□□□□ -1.43
SCN1A-218ENST00000640036 HSPA5P11021 654 aaKnown RBP6.09□□□□□ -1.43
SCN1A-218ENST00000640036 SETQ01105 290 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-218ENST00000640036 RBM26Q5T8P6 1007 aaKnown RBP6.09□□□□□ -1.43
SCN1A-218ENST00000640036 DIAPH3Q9NSV4 1193 aa6.09□□□□□ -1.43
SCN1A-218ENST00000640036 XBP1P17861 261 aa6.09□□□□□ -1.43
SCN1A-218ENST00000640036 SCLT1Q96NL6 688 aa6.09□□□□□ -1.43
SCN1A-218ENST00000640036 NACAP1Q9BZK3 213 aa6.09□□□□□ -1.43
SCN1A-218ENST00000640036 CCDC141Q6ZP82 1450 aa6.09□□□□□ -1.43
SCN1A-218ENST00000640036 IFIT1P09914 478 aaKnown RBP6.09□□□□□ -1.44
SCN1A-218ENST00000640036 SF3A1Q15459 793 aaKnown RBP6.09□□□□□ -1.44
SCN1A-218ENST00000640036 API5Q9BZZ5 524 aaKnown RBP6.09□□□□□ -1.44
SCN1A-218ENST00000640036 URB2Q14146 1524 aaKnown RBP6.08□□□□□ -1.44
SCN1A-218ENST00000640036 CPLX1O14810 134 aa6.08□□□□□ -1.44
SCN1A-218ENST00000640036 RWDD1Q9H446 243 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-218ENST00000640036 DAPK1P53355 1430 aa6.08□□□□□ -1.44
SCN1A-218ENST00000640036 KIF21AQ7Z4S6 1674 aa6.08□□□□□ -1.44
SCN1A-218ENST00000640036 DZIP1Q86YF9 867 aaKnown RBP6.08□□□□□ -1.44
SCN1A-218ENST00000640036 CASKIN1Q8WXD9 1431 aa6.08□□□□□ -1.44
SCN1A-218ENST00000640036 CABP5Q9NP86 173 aa6.08□□□□□ -1.44
SCN1A-218ENST00000640036 BRMS1Q9HCU9 246 aa6.08□□□□□ -1.44
SCN1A-218ENST00000640036 PTPRKQ15262 1439 aa6.08□□□□□ -1.44
SCN1A-218ENST00000640036 GRIN3BO60391 1043 aa6.08□□□□□ -1.44
SCN1A-218ENST00000640036 SUPT20HQ8NEM7 779 aa6.08□□□□□ -1.44
SCN1A-218ENST00000640036 LRP2BPQ9P2M1 347 aa6.08□□□□□ -1.44
SCN1A-218ENST00000640036 TRMT112Q9UI30 125 aaKnown RBP6.08□□□□□ -1.44
SCN1A-218ENST00000640036 PTMAP06454 111 aaKnown RBP6.08□□□□□ -1.44
SCN1A-218ENST00000640036 UBTFL1P0CB47 393 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-218ENST00000640036 TTC39AQ5SRH9 613 aa6.08□□□□□ -1.44
SCN1A-218ENST00000640036 CCDC146Q8IYE0 955 aa6.08□□□□□ -1.44
SCN1A-218ENST00000640036 GOLGA6L1Q8N7Z2 621 aa6.08□□□□□ -1.44
SCN1A-218ENST00000640036 DNTTIP2Q5QJE6 756 aaKnown RBP6.08□□□□□ -1.44
SCN1A-218ENST00000640036 CEP126Q9P2H0 1117 aa6.08□□□□□ -1.44
SCN1A-218ENST00000640036 ERC2O15083 957 aa6.07□□□□□ -1.44
SCN1A-218ENST00000640036 LDHCP07864 332 aa6.07□□□□□ -1.44
SCN1A-218ENST00000640036 SOGA3Q5TF21 947 aa6.07□□□□□ -1.44
SCN1A-218ENST00000640036 TCP11L2Q8N4U5 519 aa6.07□□□□□ -1.44
SCN1A-218ENST00000640036 ARHGEF10O15013 1369 aa6.07□□□□□ -1.44
SCN1A-218ENST00000640036 TNIP1Q15025 636 aa6.07□□□□□ -1.44
SCN1A-218ENST00000640036 FMNL2Q96PY5 1086 aa6.07□□□□□ -1.44
SCN1A-218ENST00000640036 WASLO00401 505 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-218ENST00000640036 NOP2P46087 812 aaKnown RBP6.07□□□□□ -1.44
SCN1A-218ENST00000640036 SAFBQ15424 915 aaKnown RBP eCLIP6.07□□□□□ -1.44
SCN1A-218ENST00000640036 ZSCAN25Q6NSZ9 544 aa6.07□□□□□ -1.44
SCN1A-218ENST00000640036 FAM184AQ8NB25 1140 aa6.07□□□□□ -1.44
SCN1A-218ENST00000640036 GNPATO15228 680 aa6.07□□□□□ -1.44
SCN1A-218ENST00000640036 NOC3LQ8WTT2 800 aaKnown RBP6.07□□□□□ -1.44
SCN1A-218ENST00000640036 ABCF2Q9UG63 623 aa6.07□□□□□ -1.44
SCN1A-218ENST00000640036 ATP10AO60312 1499 aa6.07□□□□□ -1.44
SCN1A-218ENST00000640036 RNF20Q5VTR2 975 aa6.07□□□□□ -1.44
SCN1A-218ENST00000640036 RILPL2Q969X0 211 aa6.07□□□□□ -1.44
SCN1A-218ENST00000640036 RAI14Q9P0K7 980 aa6.07□□□□□ -1.44
SCN1A-218ENST00000640036 NAIPQ13075 1403 aa6.06□□□□□ -1.44
SCN1A-218ENST00000640036 HLA-DOAP06340 250 aa6.06□□□□□ -1.44
SCN1A-218ENST00000640036 TPM2P07951 284 aa6.06□□□□□ -1.44
SCN1A-218ENST00000640036 BRDTQ58F21 947 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-218ENST00000640036 ANKRD24Q8TF21 1146 aa6.06□□□□□ -1.44
SCN1A-218ENST00000640036 TBX22Q9Y458 520 aa6.06□□□□□ -1.44
SCN1A-218ENST00000640036 POLR3DP05423 398 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-218ENST00000640036 USP5P45974 858 aa6.06□□□□□ -1.44
SCN1A-218ENST00000640036 NIM1KQ8IY84 436 aa6.06□□□□□ -1.44
SCN1A-218ENST00000640036 KIF16BQ96L93 1317 aa6.06□□□□□ -1.44
SCN1A-218ENST00000640036 A2MP01023 1474 aa6.06□□□□□ -1.44
SCN1A-218ENST00000640036 RGS3P49796 1198 aa6.06□□□□□ -1.44
SCN1A-218ENST00000640036 LARGE2Q8N3Y3 721 aa6.06□□□□□ -1.44
SCN1A-218ENST00000640036 PPP4R3AQ6IN85 833 aa6.06□□□□□ -1.44
SCN1A-218ENST00000640036 CABLES1Q8TDN4 633 aa6.06□□□□□ -1.44
SCN1A-218ENST00000640036 LRRFIP2Q9Y608 721 aaKnown RBP6.06□□□□□ -1.44
SCN1A-218ENST00000640036 GNAT3A8MTJ3 354 aa6.06□□□□□ -1.44
SCN1A-218ENST00000640036 BMS1Q14692 1282 aaKnown RBP6.06□□□□□ -1.44
SCN1A-218ENST00000640036 CREBRFQ8IUR6 639 aa6.06□□□□□ -1.44
SCN1A-218ENST00000640036 GPBP1L1Q9HC44 474 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-218ENST00000640036 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.06□□□□□ -1.44
SCN1A-218ENST00000640036 SUPT6HQ7KZ85 1726 aaKnown RBP6.05□□□□□ -1.44
SCN1A-218ENST00000640036 CLASRPQ8N2M8 674 aaKnown RBP6.05□□□□□ -1.44
SCN1A-218ENST00000640036 SLKQ9H2G2 1235 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-218ENST00000640036 IVNS1ABPQ9Y6Y0 642 aa6.05□□□□□ -1.44
SCN1A-218ENST00000640036 LPXNO60711 386 aa6.05□□□□□ -1.44
SCN1A-218ENST00000640036 TRIM37O94972 964 aa6.05□□□□□ -1.44
SCN1A-218ENST00000640036 ABCC10Q5T3U5 1492 aa6.05□□□□□ -1.44
SCN1A-218ENST00000640036 ZKSCAN1P17029 563 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-218ENST00000640036 SPRYD3Q8NCJ5 442 aa6.05□□□□□ -1.44
SCN1A-218ENST00000640036 SPC25Q9HBM1 224 aa6.05□□□□□ -1.44
SCN1A-218ENST00000640036 TOP2BQ02880 1626 aa6.05□□□□□ -1.44
SCN1A-218ENST00000640036 TPM4P67936 248 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms