RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 CCDC9Q9Y3X0 531 aaKnown RBP5.11□□□□□ -1.59
SCN1A-214ENST00000637038 KIF3BO15066 747 aa5.1□□□□□ -1.59
SCN1A-214ENST00000637038 TAOK2Q9UL54 1235 aa5.1□□□□□ -1.59
SCN1A-214ENST00000637038 MAPK8IP3Q9UPT6 1336 aa5.1□□□□□ -1.59
SCN1A-214ENST00000637038 SLIT1O75093 1534 aa5.1□□□□□ -1.59
SCN1A-214ENST00000637038 C20orf194Q5TEA3 1177 aa5.1□□□□□ -1.59
SCN1A-214ENST00000637038 SLC16A10Q8TF71 515 aa5.1□□□□□ -1.59
SCN1A-214ENST00000637038 CARD14Q9BXL6 1004 aa5.1□□□□□ -1.59
SCN1A-214ENST00000637038 ARHGAP31Q2M1Z3 1444 aa5.1□□□□□ -1.59
SCN1A-214ENST00000637038 MAP2P11137 1827 aaKnown RBP5.1□□□□□ -1.59
SCN1A-214ENST00000637038 SKAP1Q86WV1 359 aa5.1□□□□□ -1.59
SCN1A-214ENST00000637038 CDCA7Q9BWT1 371 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-214ENST00000637038 FNBP4Q8N3X1 1017 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-214ENST00000637038 GJD4Q96KN9 370 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-214ENST00000637038 CHMP4AQ9BY43 222 aa5.09□□□□□ -1.59
SCN1A-214ENST00000637038 ADAMTS8Q9UP79 889 aa5.09□□□□□ -1.59
SCN1A-214ENST00000637038 SAMD1Q6SPF0 538 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-214ENST00000637038 PMFBP1Q8TBY8 1022 aa5.09□□□□□ -1.59
SCN1A-214ENST00000637038 DISP2A7MBM2 1401 aa5.08□□□□□ -1.6
SCN1A-214ENST00000637038 RGS12O14924 1447 aa5.08□□□□□ -1.6
SCN1A-214ENST00000637038 TMEM2Q9UHN6 1383 aa5.08□□□□□ -1.6
SCN1A-214ENST00000637038 CENPJQ9HC77 1338 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-214ENST00000637038 PLIN1O60240 522 aa5.08□□□□□ -1.6
SCN1A-214ENST00000637038 SLC4A2P04920 1241 aa5.08□□□□□ -1.6
SCN1A-214ENST00000637038 AFAP1Q8N556 730 aa5.08□□□□□ -1.6
SCN1A-214ENST00000637038 ATRNO75882 1429 aa5.08□□□□□ -1.6
SCN1A-214ENST00000637038 PDE3AQ14432 1141 aa5.08□□□□□ -1.6
SCN1A-214ENST00000637038 GPR162Q16538 588 aa5.08□□□□□ -1.6
SCN1A-214ENST00000637038 C8orf34Q49A92 452 aa5.08□□□□□ -1.6
SCN1A-214ENST00000637038 TAF7LQ5H9L4 462 aa5.08□□□□□ -1.6
SCN1A-214ENST00000637038 UNC5CLQ8IV45 518 aa5.08□□□□□ -1.6
SCN1A-214ENST00000637038 PLEKHG1Q9ULL1 1385 aa5.08□□□□□ -1.6
SCN1A-214ENST00000637038 ARHGEF10O15013 1369 aa5.07□□□□□ -1.6
SCN1A-214ENST00000637038 FMN2Q9NZ56 1722 aa5.07□□□□□ -1.6
SCN1A-214ENST00000637038 RGS3P49796 1198 aa5.07□□□□□ -1.6
SCN1A-214ENST00000637038 SLFN5Q08AF3 891 aa5.07□□□□□ -1.6
SCN1A-214ENST00000637038 DHX37Q8IY37 1157 aaKnown RBP5.07□□□□□ -1.6
SCN1A-214ENST00000637038 PEAK1Q9H792 1746 aa5.07□□□□□ -1.6
SCN1A-214ENST00000637038 ROBO1Q9Y6N7 1651 aa5.07□□□□□ -1.6
SCN1A-214ENST00000637038 MORC1Q86VD1 984 aa5.07□□□□□ -1.6
SCN1A-214ENST00000637038 MYH16Q9H6N6 1097 aa5.07□□□□□ -1.6
SCN1A-214ENST00000637038 LRRC37A3O60309 1634 aa5.07□□□□□ -1.6
SCN1A-214ENST00000637038 ZFYVE9O95405 1425 aa5.07□□□□□ -1.6
SCN1A-214ENST00000637038 GSE1Q14687 1217 aa5.07□□□□□ -1.6
SCN1A-214ENST00000637038 GPBP1L1Q9HC44 474 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-214ENST00000637038 POLR3AO14802 1390 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-214ENST00000637038 DLC1Q96QB1 1528 aa5.06□□□□□ -1.6
SCN1A-214ENST00000637038 VPS72Q15906 364 aa5.06□□□□□ -1.6
SCN1A-214ENST00000637038 MAP3K5Q99683 1374 aa5.06□□□□□ -1.6
SCN1A-214ENST00000637038 PNNQ9H307 717 aaKnown RBP5.06□□□□□ -1.6
SCN1A-214ENST00000637038 RWDD1Q9H446 243 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-214ENST00000637038 CHMP4BQ9H444 224 aaKnown RBP5.06□□□□□ -1.6
SCN1A-214ENST00000637038 APAF1O14727 1248 aa5.06□□□□□ -1.6
SCN1A-214ENST00000637038 FSTL1Q12841 308 aa5.06□□□□□ -1.6
SCN1A-214ENST00000637038 L1TD1Q5T7N2 865 aaKnown RBP5.06□□□□□ -1.6
SCN1A-214ENST00000637038 ADGRF5Q8IZF2 1346 aa5.05□□□□□ -1.6
SCN1A-214ENST00000637038 CHGAP10645 457 aaKnown RBP5.05□□□□□ -1.6
SCN1A-214ENST00000637038 CAPN15O75808 1086 aa5.05□□□□□ -1.6
SCN1A-214ENST00000637038 ZNF784Q8NCA9 323 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-214ENST00000637038 RUNDC1Q96C34 613 aa5.05□□□□□ -1.6
SCN1A-214ENST00000637038 NFKBIBQ15653 356 aa5.05□□□□□ -1.6
SCN1A-214ENST00000637038 CCDC146Q8IYE0 955 aa5.05□□□□□ -1.6
SCN1A-214ENST00000637038 FLAD1Q8NFF5 587 aa5.05□□□□□ -1.6
SCN1A-214ENST00000637038 CLUAP1Q96AJ1 413 aa5.05□□□□□ -1.6
SCN1A-214ENST00000637038 FOXD4L1Q9NU39 408 aa5.05□□□□□ -1.6
SCN1A-214ENST00000637038 CRYBG1Q9Y4K1 1723 aa5.05□□□□□ -1.6
SCN1A-214ENST00000637038 CT47B1P0C2W7 299 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-214ENST00000637038 FTSJ3Q8IY81 847 aaKnown RBP5.04□□□□□ -1.6
SCN1A-214ENST00000637038 ALKQ9UM73 1620 aa5.04□□□□□ -1.6
SCN1A-214ENST00000637038 PNPLA6Q8IY17 1366 aa5.04□□□□□ -1.6
SCN1A-214ENST00000637038 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-214ENST00000637038 WDR63Q8IWG1 891 aa5.04□□□□□ -1.6
SCN1A-214ENST00000637038 UBR1Q8IWV7 1749 aa5.04□□□□□ -1.6
SCN1A-214ENST00000637038 RPGRIP1LQ68CZ1 1315 aa5.04□□□□□ -1.6
SCN1A-214ENST00000637038 FRAT1Q92837 279 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-214ENST00000637038 XRN1Q8IZH2 1706 aaKnown RBP5.03□□□□□ -1.6
SCN1A-214ENST00000637038 WWC3Q9ULE0 1092 aa5.03□□□□□ -1.6
SCN1A-214ENST00000637038 NSD2O96028 1365 aa5.03□□□□□ -1.6
SCN1A-214ENST00000637038 ITSN1Q15811 1721 aa5.03□□□□□ -1.6
SCN1A-214ENST00000637038 BEGAINQ9BUH8 593 aa5.03□□□□□ -1.6
SCN1A-214ENST00000637038 RGPD8O14715 1765 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-214ENST00000637038 NSD3Q9BZ95 1437 aa5.03□□□□□ -1.6
SCN1A-214ENST00000637038 IPO8O15397 1037 aaKnown RBP5.03□□□□□ -1.6
SCN1A-214ENST00000637038 PTMSP20962 102 aa5.03□□□□□ -1.6
SCN1A-214ENST00000637038 CFAP44Q96MT7 982 aa5.03□□□□□ -1.6
SCN1A-214ENST00000637038 PUS7Q96PZ0 661 aaKnown RBP5.03□□□□□ -1.6
SCN1A-214ENST00000637038 RSPH6AQ9H0K4 717 aa5.03□□□□□ -1.6
SCN1A-214ENST00000637038 EVC2Q86UK5 1308 aa5.03□□□□□ -1.6
SCN1A-214ENST00000637038 COL16A1Q07092 1604 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-214ENST00000637038 FAM208AQ9UK61 1670 aaKnown RBP5.02□□□□□ -1.61
SCN1A-214ENST00000637038 PLEKHG2Q9H7P9 1386 aa5.02□□□□□ -1.61
SCN1A-214ENST00000637038 PRDM10Q9NQV6 1147 aa5.02□□□□□ -1.61
SCN1A-214ENST00000637038 MTFR1LQ9H019 292 aa5.02□□□□□ -1.61
SCN1A-214ENST00000637038 THRAP3Q9Y2W1 955 aaKnown RBP5.02□□□□□ -1.61
SCN1A-214ENST00000637038 CFAP70Q5T0N1 1121 aa5.01□□□□□ -1.61
SCN1A-214ENST00000637038 ZKSCAN2Q63HK3 967 aa5.01□□□□□ -1.61
SCN1A-214ENST00000637038 SEPT12Q8IYM1 358 aa5.01□□□□□ -1.61
SCN1A-214ENST00000637038 PPIP5K1Q6PFW1 1433 aa5.01□□□□□ -1.61
SCN1A-214ENST00000637038 VGFO15240 615 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-214ENST00000637038 IGHDP01880 384 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms