RNA–Protein interactions for RNA: ENST00000621990.4

PDPN-212, Transcript of podoplanin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PDPN, Length 2,738 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-212ENST00000621990 ZNF853P0CG23 659 aa12.02□□□□□ -0.49
PDPN-212ENST00000621990 COG3Q96JB2 828 aa12.02□□□□□ -0.49
PDPN-212ENST00000621990 OVOS2A0A0J9YW53 1432 aa12.02□□□□□ -0.49
PDPN-212ENST00000621990 OVOS2Q6IE36 1432 aa12.02□□□□□ -0.49
PDPN-212ENST00000621990 PIK3R4Q99570 1358 aa12.02□□□□□ -0.49
PDPN-212ENST00000621990 ZBTB40Q9NUA8 1239 aa12.02□□□□□ -0.49
PDPN-212ENST00000621990 IFT57Q9NWB7 429 aa12.02□□□□□ -0.49
PDPN-212ENST00000621990 ARHGAP23Q9P227 1491 aa12.01□□□□□ -0.49
PDPN-212ENST00000621990 RGPD1P0DJD0 1748 aa12.01□□□□□ -0.49
PDPN-212ENST00000621990 PTCH1Q13635 1447 aa12.01□□□□□ -0.49
PDPN-212ENST00000621990 ZRANB1Q9UGI0 708 aa12.01□□□□□ -0.49
PDPN-212ENST00000621990 LAS1LQ9Y4W2 734 aaKnown RBP12.01□□□□□ -0.49
PDPN-212ENST00000621990 NCKAP5LQ9HCH0 1330 aa12.01□□□□□ -0.49
PDPN-212ENST00000621990 PLEKHG3A1L390 1219 aa12□□□□□ -0.49
PDPN-212ENST00000621990 SEC24BO95487 1268 aa12□□□□□ -0.49
PDPN-212ENST00000621990 SSH2Q76I76 1423 aa12□□□□□ -0.49
PDPN-212ENST00000621990 HMOX1P09601 288 aa12□□□□□ -0.49
PDPN-212ENST00000621990 SMC5Q8IY18 1101 aa12□□□□□ -0.49
PDPN-212ENST00000621990 TMEM57Q8N5G2 664 aa12□□□□□ -0.49
PDPN-212ENST00000621990 ARHGAP45Q92619 1136 aa12□□□□□ -0.49
PDPN-212ENST00000621990 GNAI1P63096 354 aa11.99□□□□□ -0.49
PDPN-212ENST00000621990 ITPRIPQ8IWB1 547 aa11.99□□□□□ -0.49
PDPN-212ENST00000621990 USP6P35125 1406 aa11.99□□□□□ -0.49
PDPN-212ENST00000621990 PTPRUQ92729 1446 aa11.99□□□□□ -0.49
PDPN-212ENST00000621990 RIMS1Q86UR5 1692 aaKnown RBP11.99□□□□□ -0.49
PDPN-212ENST00000621990 VAMP4O75379 141 aa11.99□□□□□ -0.49
PDPN-212ENST00000621990 LTKP29376 864 aa11.99□□□□□ -0.49
PDPN-212ENST00000621990 LMOD3Q0VAK6 560 aa11.99□□□□□ -0.49
PDPN-212ENST00000621990 DIP2AQ14689 1571 aa11.98□□□□□ -0.49
PDPN-212ENST00000621990 USP31Q70CQ4 1352 aa11.98□□□□□ -0.49
PDPN-212ENST00000621990 PEAK1Q9H792 1746 aa11.98□□□□□ -0.49
PDPN-212ENST00000621990 DAXXQ9UER7 740 aaPredicted RBP11.98□□□□□ -0.49
PDPN-212ENST00000621990 TTC21BQ7Z4L5 1316 aa11.98□□□□□ -0.49
PDPN-212ENST00000621990 SLC4A3P48751 1232 aa11.97□□□□□ -0.49
PDPN-212ENST00000621990 MRPL50Q8N5N7 158 aaKnown RBP11.97□□□□□ -0.49
PDPN-212ENST00000621990 CFAP44Q96MT7 982 aa11.97□□□□□ -0.49
PDPN-212ENST00000621990 RRS1Q15050 365 aaKnown RBP11.97□□□□□ -0.49
PDPN-212ENST00000621990 MBIPQ9NS73 344 aa11.97□□□□□ -0.49
PDPN-212ENST00000621990 TBC1D32Q96NH3 1257 aa11.96□□□□□ -0.49
PDPN-212ENST00000621990 ACEP12821 1306 aa11.96□□□□□ -0.5
PDPN-212ENST00000621990 FMN2Q9NZ56 1722 aa11.96□□□□□ -0.5
PDPN-212ENST00000621990 THUMPD2Q9BTF0 503 aaKnown RBP11.95□□□□□ -0.5
PDPN-212ENST00000621990 ABCC4O15439 1325 aa11.95□□□□□ -0.5
PDPN-212ENST00000621990 XRN1Q8IZH2 1706 aaKnown RBP11.95□□□□□ -0.5
PDPN-212ENST00000621990 FER1L4A9Z1Z3 1794 aa11.95□□□□□ -0.5
PDPN-212ENST00000621990 TSPYL6Q8N831 410 aa11.95□□□□□ -0.5
PDPN-212ENST00000621990 ZBTB7BO15156 539 aaPredicted RBP11.94□□□□□ -0.5
PDPN-212ENST00000621990 EIF4A2Q14240 407 aaKnown RBP11.94□□□□□ -0.5
PDPN-212ENST00000621990 CHMP4BQ9H444 224 aaKnown RBP11.94□□□□□ -0.5
PDPN-212ENST00000621990 NUCB1Q02818 461 aa11.94□□□□□ -0.5
PDPN-212ENST00000621990 NFKBIBQ15653 356 aa11.94□□□□□ -0.5
PDPN-212ENST00000621990 TBX22Q9Y458 520 aa11.94□□□□□ -0.5
PDPN-212ENST00000621990 KIF24Q5T7B8 1368 aa11.94□□□□□ -0.5
PDPN-212ENST00000621990 USP54Q70EL1 1684 aa11.93□□□□□ -0.5
PDPN-212ENST00000621990 BCL11AQ9H165 835 aa11.93□□□□□ -0.5
PDPN-212ENST00000621990 UPF2Q9HAU5 1272 aaKnown RBP11.93□□□□□ -0.5
PDPN-212ENST00000621990 TTC21AQ8NDW8 1320 aa11.93□□□□□ -0.5
PDPN-212ENST00000621990 EID1Q9Y6B2 187 aa11.93□□□□□ -0.5
PDPN-212ENST00000621990 TWISTNBQ3B726 338 aaPredicted RBP11.92□□□□□ -0.5
PDPN-212ENST00000621990 BECN1Q14457 450 aa11.92□□□□□ -0.5
PDPN-212ENST00000621990 ARHGEF10O15013 1369 aa11.91□□□□□ -0.5
PDPN-212ENST00000621990 C8orf58Q8NAV2 365 aa11.91□□□□□ -0.5
PDPN-212ENST00000621990 RGPD8O14715 1765 aaPredicted RBP11.91□□□□□ -0.5
PDPN-212ENST00000621990 PIK3C2AO00443 1686 aa11.91□□□□□ -0.5
PDPN-212ENST00000621990 KIAA0232Q92628 1395 aa11.91□□□□□ -0.5
PDPN-212ENST00000621990 FAM83GA6ND36 823 aa11.9□□□□□ -0.5
PDPN-212ENST00000621990 AEBP1Q8IUX7 1158 aa11.9□□□□□ -0.5
PDPN-212ENST00000621990 MARF1Q9Y4F3 1742 aaKnown RBP11.9□□□□□ -0.5
PDPN-212ENST00000621990 SULT6B1Q6IMI4 303 aa11.9□□□□□ -0.5
PDPN-212ENST00000621990 GCC1Q96CN9 775 aa11.9□□□□□ -0.5
PDPN-212ENST00000621990 SLC26A8Q96RN1 970 aa11.9□□□□□ -0.5
PDPN-212ENST00000621990 AMOTL2Q9Y2J4 779 aa11.9□□□□□ -0.5
PDPN-212ENST00000621990 ANKARQ7Z5J8 1434 aa11.9□□□□□ -0.5
PDPN-212ENST00000621990 KDRP35968 1356 aa11.9□□□□□ -0.51
PDPN-212ENST00000621990 CHL1O00533 1208 aa11.89□□□□□ -0.51
PDPN-212ENST00000621990 CEBPAP49715 358 aaPredicted RBP11.89□□□□□ -0.51
PDPN-212ENST00000621990 CHD1LQ86WJ1 897 aa11.89□□□□□ -0.51
PDPN-212ENST00000621990 API5Q9BZZ5 524 aaKnown RBP11.89□□□□□ -0.51
PDPN-212ENST00000621990 CRB1P82279 1406 aa11.89□□□□□ -0.51
PDPN-212ENST00000621990 RGS12O14924 1447 aa11.89□□□□□ -0.51
PDPN-212ENST00000621990 ANTXR1Q9H6X2 564 aa11.88□□□□□ -0.51
PDPN-212ENST00000621990 SBNO1A3KN83 1393 aa11.88□□□□□ -0.51
PDPN-212ENST00000621990 HAP1P54257 671 aaPredicted RBP11.88□□□□□ -0.51
PDPN-212ENST00000621990 HSP90AB2PQ58FF8 381 aa11.88□□□□□ -0.51
PDPN-212ENST00000621990 FLT4P35916 1363 aa11.88□□□□□ -0.51
PDPN-212ENST00000621990 DCTN1Q14203 1278 aa11.88□□□□□ -0.51
PDPN-212ENST00000621990 SIRT2Q8IXJ6 389 aa11.88□□□□□ -0.51
PDPN-212ENST00000621990 LRRC37A3O60309 1634 aa11.87□□□□□ -0.51
PDPN-212ENST00000621990 MAP3K19Q56UN5 1328 aa11.87□□□□□ -0.51
PDPN-212ENST00000621990 ELL2O00472 640 aaPredicted RBP11.87□□□□□ -0.51
PDPN-212ENST00000621990 BMP2KLQ5H9B9 411 aa11.87□□□□□ -0.51
PDPN-212ENST00000621990 INTS3Q68E01 1043 aaKnown RBP11.87□□□□□ -0.51
PDPN-212ENST00000621990 THEMISQ8N1K5 641 aaPredicted RBP11.87□□□□□ -0.51
PDPN-212ENST00000621990 TBC1D2Q9BYX2 928 aa11.87□□□□□ -0.51
PDPN-212ENST00000621990 C22orf23Q9BZE7 217 aa11.86□□□□□ -0.51
PDPN-212ENST00000621990 IGSF1Q8N6C5 1336 aa11.85□□□□□ -0.51
PDPN-212ENST00000621990 CEP170BQ9Y4F5 1589 aaPredicted RBP11.85□□□□□ -0.51
PDPN-212ENST00000621990 NUTM2FA1L443 756 aa11.85□□□□□ -0.51
PDPN-212ENST00000621990 RBM25P49756 843 aaKnown RBP11.85□□□□□ -0.51
PDPN-212ENST00000621990 LNPKQ9C0E8 428 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms