RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 F6X3S4 739 aa13.54□□□□□ -0.24
VPS11-208ENST00000621676 DDX54Q8TDD1 881 aaKnown RBP13.54□□□□□ -0.24
VPS11-208ENST00000621676 LGR6Q9HBX8 967 aa13.54□□□□□ -0.24
VPS11-208ENST00000621676 ARHGEF28Q8N1W1 1705 aaKnown RBP13.54□□□□□ -0.24
VPS11-208ENST00000621676 NPHP4O75161 1426 aaPredicted RBP13.54□□□□□ -0.24
VPS11-208ENST00000621676 C3P01024 1663 aa13.54□□□□□ -0.24
VPS11-208ENST00000621676 HOXC9P31274 260 aa13.54□□□□□ -0.24
VPS11-208ENST00000621676 NFE2L2Q16236 605 aa13.53□□□□□ -0.24
VPS11-208ENST00000621676 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.53□□□□□ -0.24
VPS11-208ENST00000621676 FER1L4A9Z1Z3 1794 aa13.53□□□□□ -0.24
VPS11-208ENST00000621676 TSPYL4Q9UJ04 414 aa13.53□□□□□ -0.24
VPS11-208ENST00000621676 CCDC9Q9Y3X0 531 aaKnown RBP13.53□□□□□ -0.24
VPS11-208ENST00000621676 KCNQ3O43525 872 aa13.52□□□□□ -0.24
VPS11-208ENST00000621676 SLC39A6Q13433 755 aa13.52□□□□□ -0.24
VPS11-208ENST00000621676 NKTRP30414 1462 aaKnown RBP13.52□□□□□ -0.25
VPS11-208ENST00000621676 MYOM1P52179 1685 aa13.52□□□□□ -0.25
VPS11-208ENST00000621676 IGHDP01880 384 aa13.52□□□□□ -0.25
VPS11-208ENST00000621676 IFT172Q9UG01 1749 aa13.51□□□□□ -0.25
VPS11-208ENST00000621676 SETBP1Q9Y6X0 1596 aa13.51□□□□□ -0.25
VPS11-208ENST00000621676 TWISTNBQ3B726 338 aaPredicted RBP13.51□□□□□ -0.25
VPS11-208ENST00000621676 ZNF521Q96K83 1311 aa13.51□□□□□ -0.25
VPS11-208ENST00000621676 ATP7BP35670 1465 aa13.51□□□□□ -0.25
VPS11-208ENST00000621676 PRDM11Q9NQV5 511 aa13.51□□□□□ -0.25
VPS11-208ENST00000621676 ZC3H13Q5T200 1668 aaKnown RBP13.5□□□□□ -0.25
VPS11-208ENST00000621676 RTL5Q5HYW3 569 aaPredicted RBP13.5□□□□□ -0.25
VPS11-208ENST00000621676 SYTL4Q96C24 671 aaPredicted RBP13.5□□□□□ -0.25
VPS11-208ENST00000621676 USP6P35125 1406 aa13.5□□□□□ -0.25
VPS11-208ENST00000621676 EDC4Q6P2E9 1401 aaKnown RBP13.5□□□□□ -0.25
VPS11-208ENST00000621676 AIMP1Q12904 312 aaKnown RBP13.49□□□□□ -0.25
VPS11-208ENST00000621676 ANKRD24Q8TF21 1146 aa13.49□□□□□ -0.25
VPS11-208ENST00000621676 PRAMEF22A3QJZ6 481 aa13.49□□□□□ -0.25
VPS11-208ENST00000621676 TRIM27P14373 513 aa13.49□□□□□ -0.25
VPS11-208ENST00000621676 EVA1CP58658 441 aa13.49□□□□□ -0.25
VPS11-208ENST00000621676 ZNF530Q6P9A1 599 aaPredicted RBP13.49□□□□□ -0.25
VPS11-208ENST00000621676 TMEM57Q8N5G2 664 aa13.49□□□□□ -0.25
VPS11-208ENST00000621676 SLAIN2Q9P270 581 aa13.49□□□□□ -0.25
VPS11-208ENST00000621676 BLMP54132 1417 aaPredicted RBP13.48□□□□□ -0.25
VPS11-208ENST00000621676 NPC1L1Q9UHC9 1359 aa13.48□□□□□ -0.25
VPS11-208ENST00000621676 SLC4A3P48751 1232 aa13.48□□□□□ -0.25
VPS11-208ENST00000621676 SLC4A2P04920 1241 aa13.48□□□□□ -0.25
VPS11-208ENST00000621676 JARID2Q92833 1246 aaPredicted RBP13.48□□□□□ -0.25
VPS11-208ENST00000621676 UBR1Q8IWV7 1749 aa13.48□□□□□ -0.25
VPS11-208ENST00000621676 PUS7Q96PZ0 661 aaKnown RBP13.47□□□□□ -0.25
VPS11-208ENST00000621676 PCDHB15Q9Y5E8 787 aa13.47□□□□□ -0.25
VPS11-208ENST00000621676 POLR1AO95602 1720 aaPredicted RBP13.47□□□□□ -0.25
VPS11-208ENST00000621676 TOM1L2Q6ZVM7 507 aa13.47□□□□□ -0.25
VPS11-208ENST00000621676 CPSF1Q10570 1443 aaKnown RBP13.47□□□□□ -0.25
VPS11-208ENST00000621676 CEP170BQ9Y4F5 1589 aaPredicted RBP13.47□□□□□ -0.25
VPS11-208ENST00000621676 G2E3Q7L622 706 aa13.46□□□□□ -0.25
VPS11-208ENST00000621676 NRXN3Q9Y4C0 1643 aa13.46□□□□□ -0.25
VPS11-208ENST00000621676 DZIP1LQ8IYY4 767 aaKnown RBP13.46□□□□□ -0.25
VPS11-208ENST00000621676 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.46□□□□□ -0.26
VPS11-208ENST00000621676 ZKSCAN2Q63HK3 967 aa13.46□□□□□ -0.26
VPS11-208ENST00000621676 LAMC1P11047 1609 aa13.45□□□□□ -0.26
VPS11-208ENST00000621676 MYO3AQ8NEV4 1616 aa13.45□□□□□ -0.26
VPS11-208ENST00000621676 TEFQ10587 303 aa13.45□□□□□ -0.26
VPS11-208ENST00000621676 WDR63Q8IWG1 891 aa13.45□□□□□ -0.26
VPS11-208ENST00000621676 FAM135BQ49AJ0 1406 aa13.45□□□□□ -0.26
VPS11-208ENST00000621676 PTCD1O75127 700 aaKnown RBP13.45□□□□□ -0.26
VPS11-208ENST00000621676 CADPS2Q86UW7 1296 aa13.45□□□□□ -0.26
VPS11-208ENST00000621676 BRINP3Q76B58 766 aa13.44□□□□□ -0.26
VPS11-208ENST00000621676 IL17REQ8NFR9 667 aa13.44□□□□□ -0.26
VPS11-208ENST00000621676 PNNQ9H307 717 aaKnown RBP13.44□□□□□ -0.26
VPS11-208ENST00000621676 FAM182BQ5T319 152 aa13.44□□□□□ -0.26
VPS11-208ENST00000621676 SIRT1Q96EB6 747 aa13.44□□□□□ -0.26
VPS11-208ENST00000621676 NSD2O96028 1365 aa13.43□□□□□ -0.26
VPS11-208ENST00000621676 NINLQ9Y2I6 1382 aa13.43□□□□□ -0.26
VPS11-208ENST00000621676 MYL6BP14649 208 aa13.43□□□□□ -0.26
VPS11-208ENST00000621676 RAPGEF4Q8WZA2 1011 aa13.42□□□□□ -0.26
VPS11-208ENST00000621676 REREQ9P2R6 1566 aa13.42□□□□□ -0.26
VPS11-208ENST00000621676 VAMP4O75379 141 aa13.42□□□□□ -0.26
VPS11-208ENST00000621676 GNAI1P63096 354 aa13.42□□□□□ -0.26
VPS11-208ENST00000621676 FKBP5Q13451 457 aaPredicted RBP13.42□□□□□ -0.26
VPS11-208ENST00000621676 KIAA1210Q9ULL0 1709 aa13.42□□□□□ -0.26
VPS11-208ENST00000621676 AEBP2Q6ZN18 517 aaPredicted RBP13.42□□□□□ -0.26
VPS11-208ENST00000621676 LNPKQ9C0E8 428 aa13.42□□□□□ -0.26
VPS11-208ENST00000621676 C1orf141Q5JVX7 400 aa13.41□□□□□ -0.26
VPS11-208ENST00000621676 MSH6P52701 1360 aa13.41□□□□□ -0.26
VPS11-208ENST00000621676 RGPD8O14715 1765 aaPredicted RBP13.41□□□□□ -0.26
VPS11-208ENST00000621676 GNAT3A8MTJ3 354 aa13.41□□□□□ -0.26
VPS11-208ENST00000621676 PHAXQ9H814 394 aaKnown RBP13.41□□□□□ -0.26
VPS11-208ENST00000621676 ATF7IPQ6VMQ6 1270 aa13.4□□□□□ -0.26
VPS11-208ENST00000621676 TRMT2AQ8IZ69 625 aaKnown RBP13.4□□□□□ -0.26
VPS11-208ENST00000621676 NFATC2IPQ8NCF5 419 aa13.4□□□□□ -0.26
VPS11-208ENST00000621676 SPRYD3Q8NCJ5 442 aa13.4□□□□□ -0.26
VPS11-208ENST00000621676 DLC1Q96QB1 1528 aa13.4□□□□□ -0.26
VPS11-208ENST00000621676 FLT4P35916 1363 aa13.39□□□□□ -0.27
VPS11-208ENST00000621676 TTC21AQ8NDW8 1320 aa13.39□□□□□ -0.27
VPS11-208ENST00000621676 ERICH6Q7L0X2 663 aa13.39□□□□□ -0.27
VPS11-208ENST00000621676 IP6K1Q92551 441 aa13.39□□□□□ -0.27
VPS11-208ENST00000621676 CFAP44Q96MT7 982 aa13.39□□□□□ -0.27
VPS11-208ENST00000621676 EP400Q96L91 3159 aa13.39□□□□□ -0.27
VPS11-208ENST00000621676 KIAA0232Q92628 1395 aa13.38□□□□□ -0.27
VPS11-208ENST00000621676 INSRP06213 1382 aa13.38□□□□□ -0.27
VPS11-208ENST00000621676 KCNQ4P56696 695 aa13.38□□□□□ -0.27
VPS11-208ENST00000621676 LARP1Q6PKG0 1096 aaKnown RBP13.38□□□□□ -0.27
VPS11-208ENST00000621676 MAP2P11137 1827 aaKnown RBP13.38□□□□□ -0.27
VPS11-208ENST00000621676 BTBD11A6QL63 1104 aa13.38□□□□□ -0.27
VPS11-208ENST00000621676 ARHGEF25Q86VW2 580 aa13.38□□□□□ -0.27
VPS11-208ENST00000621676 ARHGAP23Q9P227 1491 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms