RNA–Protein interactions for RNA: ENST00000617641.4

PCDHGC3-205, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGC3, Length 2,346 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-205ENST00000617641 AEBP1Q8IUX7 1158 aa22.44■■□□□ 1.18
PCDHGC3-205ENST00000617641 FRAT1Q92837 279 aaPredicted RBP22.44■■□□□ 1.18
PCDHGC3-205ENST00000617641 MARF1Q9Y4F3 1742 aaKnown RBP22.43■■□□□ 1.18
PCDHGC3-205ENST00000617641 PAK3O75914 559 aaPredicted RBP22.43■■□□□ 1.18
PCDHGC3-205ENST00000617641 PDE3AQ14432 1141 aa22.42■■□□□ 1.18
PCDHGC3-205ENST00000617641 SULT6B1Q6IMI4 303 aa22.42■■□□□ 1.18
PCDHGC3-205ENST00000617641 THUMPD2Q9BTF0 503 aaKnown RBP22.41■■□□□ 1.18
PCDHGC3-205ENST00000617641 SBNO1A3KN83 1393 aa22.41■■□□□ 1.18
PCDHGC3-205ENST00000617641 ABTB2Q8N961 1025 aa22.41■■□□□ 1.18
PCDHGC3-205ENST00000617641 PANK1Q8TE04 598 aa22.41■■□□□ 1.18
PCDHGC3-205ENST00000617641 DLG5Q8TDM6 1919 aa22.41■■□□□ 1.18
PCDHGC3-205ENST00000617641 RGPD1P0DJD0 1748 aa22.41■■□□□ 1.18
PCDHGC3-205ENST00000617641 ESCO1Q5FWF5 840 aa22.4■■□□□ 1.18
PCDHGC3-205ENST00000617641 FLT4P35916 1363 aa22.4■■□□□ 1.18
PCDHGC3-205ENST00000617641 CT47B1P0C2W7 299 aaPredicted RBP22.4■■□□□ 1.18
PCDHGC3-205ENST00000617641 USP54Q70EL1 1684 aa22.39■■□□□ 1.17
PCDHGC3-205ENST00000617641 LAS1LQ9Y4W2 734 aaKnown RBP22.39■■□□□ 1.17
PCDHGC3-205ENST00000617641 AMPHP49418 695 aa22.38■■□□□ 1.17
PCDHGC3-205ENST00000617641 PROSER2Q86WR7 435 aaPredicted RBP22.37■■□□□ 1.17
PCDHGC3-205ENST00000617641 TNNQ9UQP3 1299 aa22.37■■□□□ 1.17
PCDHGC3-205ENST00000617641 COG6Q9Y2V7 657 aa22.37■■□□□ 1.17
PCDHGC3-205ENST00000617641 KDM2BQ8NHM5 1336 aa22.35■■□□□ 1.17
PCDHGC3-205ENST00000617641 FAM83GA6ND36 823 aa22.35■■□□□ 1.17
PCDHGC3-205ENST00000617641 CALD1Q05682 793 aaKnown RBP22.35■■□□□ 1.17
PCDHGC3-205ENST00000617641 LMOD3Q0VAK6 560 aa22.35■■□□□ 1.17
PCDHGC3-205ENST00000617641 RLBP1P12271 317 aa22.34■■□□□ 1.17
PCDHGC3-205ENST00000617641 PSME1Q06323 249 aa22.34■■□□□ 1.17
PCDHGC3-205ENST00000617641 ORAI2Q96SN7 254 aa22.34■■□□□ 1.17
PCDHGC3-205ENST00000617641 SMC4Q9NTJ3 1288 aa22.34■■□□□ 1.17
PCDHGC3-205ENST00000617641 ARHGEF10O15013 1369 aa22.34■■□□□ 1.17
PCDHGC3-205ENST00000617641 SSH1Q8WYL5 1049 aa22.33■■□□□ 1.17
PCDHGC3-205ENST00000617641 DCTN1Q14203 1278 aa22.32■■□□□ 1.16
PCDHGC3-205ENST00000617641 IFT57Q9NWB7 429 aa22.32■■□□□ 1.16
PCDHGC3-205ENST00000617641 GNAI1P63096 354 aa22.31■■□□□ 1.16
PCDHGC3-205ENST00000617641 CLUAP1Q96AJ1 413 aa22.31■■□□□ 1.16
PCDHGC3-205ENST00000617641 HOXC9P31274 260 aa22.31■■□□□ 1.16
PCDHGC3-205ENST00000617641 CENPQQ7L2Z9 268 aaPredicted RBP22.31■■□□□ 1.16
PCDHGC3-205ENST00000617641 ZNF853P0CG23 659 aa22.3■■□□□ 1.16
PCDHGC3-205ENST00000617641 HSPA2P54652 639 aa22.3■■□□□ 1.16
PCDHGC3-205ENST00000617641 SKAP1Q86WV1 359 aa22.3■■□□□ 1.16
PCDHGC3-205ENST00000617641 ZKSCAN2Q63HK3 967 aa22.3■■□□□ 1.16
PCDHGC3-205ENST00000617641 EYA1Q99502 592 aa22.3■■□□□ 1.16
PCDHGC3-205ENST00000617641 MBIPQ9NS73 344 aa22.29■■□□□ 1.16
PCDHGC3-205ENST00000617641 KIF24Q5T7B8 1368 aa22.29■■□□□ 1.16
PCDHGC3-205ENST00000617641 FOXO3O43524 673 aa22.29■■□□□ 1.16
PCDHGC3-205ENST00000617641 XPCQ01831 940 aaPredicted RBP22.29■■□□□ 1.16
PCDHGC3-205ENST00000617641 IGSF1Q8N6C5 1336 aa22.28■■□□□ 1.16
PCDHGC3-205ENST00000617641 STRCP1A6NGW2 1772 aa22.28■■□□□ 1.16
PCDHGC3-205ENST00000617641 KDRP35968 1356 aa22.27■■□□□ 1.16
PCDHGC3-205ENST00000617641 TCERG1O14776 1098 aaKnown RBP22.27■■□□□ 1.16
PCDHGC3-205ENST00000617641 CFAP44Q96MT7 982 aa22.27■■□□□ 1.16
PCDHGC3-205ENST00000617641 C19orf44Q9H6X5 657 aa22.27■■□□□ 1.16
PCDHGC3-205ENST00000617641 LTN1O94822 1766 aa22.26■■□□□ 1.15
PCDHGC3-205ENST00000617641 NFAT5O94916 1531 aa22.26■■□□□ 1.15
PCDHGC3-205ENST00000617641 C1orf167Q5SNV9 1468 aa22.26■■□□□ 1.15
PCDHGC3-205ENST00000617641 DZIP1LQ8IYY4 767 aaKnown RBP22.25■■□□□ 1.15
PCDHGC3-205ENST00000617641 TSPYL6Q8N831 410 aa22.25■■□□□ 1.15
PCDHGC3-205ENST00000617641 TRIM27P14373 513 aa22.25■■□□□ 1.15
PCDHGC3-205ENST00000617641 FTSJ3Q8IY81 847 aaKnown RBP22.25■■□□□ 1.15
PCDHGC3-205ENST00000617641 LTV1Q96GA3 475 aaPredicted RBP22.25■■□□□ 1.15
PCDHGC3-205ENST00000617641 NOB1Q9ULX3 412 aaKnown RBP22.25■■□□□ 1.15
PCDHGC3-205ENST00000617641 ALDH1L2Q3SY69 923 aa22.24■■□□□ 1.15
PCDHGC3-205ENST00000617641 MCM10Q7L590 875 aa22.24■■□□□ 1.15
PCDHGC3-205ENST00000617641 TMEM94Q12767 1356 aa22.24■■□□□ 1.15
PCDHGC3-205ENST00000617641 RTL1A6NKG5 1358 aa22.23■■□□□ 1.15
PCDHGC3-205ENST00000617641 VAMP4O75379 141 aa22.23■■□□□ 1.15
PCDHGC3-205ENST00000617641 MTHFSDQ2M296 383 aaKnown RBP22.23■■□□□ 1.15
PCDHGC3-205ENST00000617641 IGHDP01880 384 aa22.23■■□□□ 1.15
PCDHGC3-205ENST00000617641 MVPQ14764 893 aaKnown RBP22.23■■□□□ 1.15
PCDHGC3-205ENST00000617641 ATF7IPQ6VMQ6 1270 aa22.23■■□□□ 1.15
PCDHGC3-205ENST00000617641 ELL2O00472 640 aaPredicted RBP22.22■■□□□ 1.15
PCDHGC3-205ENST00000617641 KIF16BQ96L93 1317 aa22.22■■□□□ 1.15
PCDHGC3-205ENST00000617641 MS4A1P11836 297 aa22.22■■□□□ 1.15
PCDHGC3-205ENST00000617641 ZNF428Q96B54 188 aa22.21■■□□□ 1.15
PCDHGC3-205ENST00000617641 KIF1AQ12756 1690 aa22.21■■□□□ 1.15
PCDHGC3-205ENST00000617641 PLEKHG5O94827 1062 aa22.2■■□□□ 1.15
PCDHGC3-205ENST00000617641 C8orf58Q8NAV2 365 aa22.2■■□□□ 1.15
PCDHGC3-205ENST00000617641 TRPM3Q9HCF6 1732 aaPredicted RBP22.2■■□□□ 1.15
PCDHGC3-205ENST00000617641 ZBTB7CA1YPR0 619 aa22.2■■□□□ 1.14
PCDHGC3-205ENST00000617641 LMOD2Q6P5Q4 547 aa22.2■■□□□ 1.14
PCDHGC3-205ENST00000617641 KCNH5Q8NCM2 988 aa22.2■■□□□ 1.14
PCDHGC3-205ENST00000617641 IP6K1Q92551 441 aa22.2■■□□□ 1.14
PCDHGC3-205ENST00000617641 KDM4FA0A1W2PPD8 638 aa22.19■■□□□ 1.14
PCDHGC3-205ENST00000617641 ATF3P18847 181 aa22.19■■□□□ 1.14
PCDHGC3-205ENST00000617641 AAMPQ13685 434 aa22.19■■□□□ 1.14
PCDHGC3-205ENST00000617641 TWISTNBQ3B726 338 aaPredicted RBP22.19■■□□□ 1.14
PCDHGC3-205ENST00000617641 KRT28Q7Z3Y7 464 aa22.19■■□□□ 1.14
PCDHGC3-205ENST00000617641 MST1RQ04912 1400 aa22.18■■□□□ 1.14
PCDHGC3-205ENST00000617641 PCDHB15Q9Y5E8 787 aa22.18■■□□□ 1.14
PCDHGC3-205ENST00000617641 IPO8O15397 1037 aaKnown RBP22.18■■□□□ 1.14
PCDHGC3-205ENST00000617641 CRB1P82279 1406 aa22.17■■□□□ 1.14
PCDHGC3-205ENST00000617641 CHL1O00533 1208 aa22.17■■□□□ 1.14
PCDHGC3-205ENST00000617641 BRPF1P55201 1214 aaPredicted RBP22.17■■□□□ 1.14
PCDHGC3-205ENST00000617641 MRPL50Q8N5N7 158 aaKnown RBP22.17■■□□□ 1.14
PCDHGC3-205ENST00000617641 USHBP1Q8N6Y0 703 aa22.17■■□□□ 1.14
PCDHGC3-205ENST00000617641 GAS2L2Q8NHY3 880 aa22.17■■□□□ 1.14
PCDHGC3-205ENST00000617641 SLIT3O75094 1523 aa22.16■■□□□ 1.14
PCDHGC3-205ENST00000617641 GCP02774 474 aa22.16■■□□□ 1.14
PCDHGC3-205ENST00000617641 ITPRIPQ8IWB1 547 aa22.16■■□□□ 1.14
PCDHGC3-205ENST00000617641 RTF1Q92541 710 aaKnown RBP22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms