RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 STK3Q13188 491 aa16.74■□□□□ 0.27
CPSF1-212ENST00000616140 DUSP27Q5VZP5 1158 aa16.74■□□□□ 0.27
CPSF1-212ENST00000616140 FAM177BA6PVY3 158 aa16.74■□□□□ 0.27
CPSF1-212ENST00000616140 SPC24Q8NBT2 197 aa16.74■□□□□ 0.27
CPSF1-212ENST00000616140 DCTN1Q14203 1278 aa16.73■□□□□ 0.27
CPSF1-212ENST00000616140 OLFM4Q6UX06 510 aa16.73■□□□□ 0.27
CPSF1-212ENST00000616140 PDILTQ8N807 584 aa16.73■□□□□ 0.27
CPSF1-212ENST00000616140 ESPNB1AK53 854 aa16.72■□□□□ 0.27
CPSF1-212ENST00000616140 TBC1D2BQ9UPU7 963 aa16.72■□□□□ 0.27
CPSF1-212ENST00000616140 LARP1BQ659C4 914 aaKnown RBP16.72■□□□□ 0.27
CPSF1-212ENST00000616140 MIS18AQ9NYP9 233 aa16.72■□□□□ 0.27
CPSF1-212ENST00000616140 STK38Q15208 465 aa16.72■□□□□ 0.27
CPSF1-212ENST00000616140 ARGLU1Q9NWB6 273 aaPredicted RBP16.72■□□□□ 0.27
CPSF1-212ENST00000616140 KRT85P78386 507 aa16.71■□□□□ 0.27
CPSF1-212ENST00000616140 CWC27Q6UX04 472 aaKnown RBP16.71■□□□□ 0.27
CPSF1-212ENST00000616140 UPF3BQ9BZI7 483 aaKnown RBP16.71■□□□□ 0.27
CPSF1-212ENST00000616140 ABCA10Q8WWZ4 1543 aa16.71■□□□□ 0.27
CPSF1-212ENST00000616140 TEX35Q5T0J7 233 aa16.7■□□□□ 0.26
CPSF1-212ENST00000616140 MAP7D2Q96T17 732 aa16.7■□□□□ 0.26
CPSF1-212ENST00000616140 MTMR7Q9Y216 660 aa16.7■□□□□ 0.26
CPSF1-212ENST00000616140 SMC2O95347 1197 aa16.7■□□□□ 0.26
CPSF1-212ENST00000616140 CCDC192P0DO97 292 aa16.7■□□□□ 0.26
CPSF1-212ENST00000616140 HMGN5P82970 282 aaKnown RBP16.7■□□□□ 0.26
CPSF1-212ENST00000616140 SART3Q15020 963 aaKnown RBP16.7■□□□□ 0.26
CPSF1-212ENST00000616140 BLOC1S2Q6QNY1 142 aa16.7■□□□□ 0.26
CPSF1-212ENST00000616140 MCM10Q7L590 875 aa16.7■□□□□ 0.26
CPSF1-212ENST00000616140 NUDT16Q96DE0 195 aaKnown RBP16.7■□□□□ 0.26
CPSF1-212ENST00000616140 CCDC141Q6ZP82 1450 aa16.7■□□□□ 0.26
CPSF1-212ENST00000616140 XBP1P17861 261 aa16.7■□□□□ 0.26
CPSF1-212ENST00000616140 WAPLQ7Z5K2 1190 aa16.7■□□□□ 0.26
CPSF1-212ENST00000616140 DNMBPQ6XZF7 1577 aa16.7■□□□□ 0.26
CPSF1-212ENST00000616140 PROSER2Q86WR7 435 aaPredicted RBP16.7■□□□□ 0.26
CPSF1-212ENST00000616140 TATP17735 454 aaPredicted RBP16.69■□□□□ 0.26
CPSF1-212ENST00000616140 AACSQ86V21 672 aa16.69■□□□□ 0.26
CPSF1-212ENST00000616140 RPRD2Q5VT52 1461 aaKnown RBP16.69■□□□□ 0.26
CPSF1-212ENST00000616140 NKTRP30414 1462 aaKnown RBP16.69■□□□□ 0.26
CPSF1-212ENST00000616140 MYL6BP14649 208 aa16.69■□□□□ 0.26
CPSF1-212ENST00000616140 RBM10P98175 930 aaKnown RBP16.69■□□□□ 0.26
CPSF1-212ENST00000616140 RRP12Q5JTH9 1297 aaKnown RBP16.69■□□□□ 0.26
CPSF1-212ENST00000616140 MTERF4Q7Z6M4 381 aaKnown RBP16.69■□□□□ 0.26
CPSF1-212ENST00000616140 PLB1Q6P1J6 1458 aa16.69■□□□□ 0.26
CPSF1-212ENST00000616140 TRIM34Q9BYJ4 488 aa16.69■□□□□ 0.26
CPSF1-212ENST00000616140 ADGRF5Q8IZF2 1346 aa16.69■□□□□ 0.26
CPSF1-212ENST00000616140 THEMISQ8N1K5 641 aaPredicted RBP16.68■□□□□ 0.26
CPSF1-212ENST00000616140 JAKMIP1Q96N16 626 aaKnown RBP16.68■□□□□ 0.26
CPSF1-212ENST00000616140 AEBP1Q8IUX7 1158 aa16.68■□□□□ 0.26
CPSF1-212ENST00000616140 MAP3K1Q13233 1512 aa16.68■□□□□ 0.26
CPSF1-212ENST00000616140 ME1P48163 572 aa16.68■□□□□ 0.26
CPSF1-212ENST00000616140 ANKRD1Q15327 319 aa16.68■□□□□ 0.26
CPSF1-212ENST00000616140 RBM42Q9BTD8 480 aaKnown RBP16.68■□□□□ 0.26
CPSF1-212ENST00000616140 TNMDQ9H2S6 317 aa16.68■□□□□ 0.26
CPSF1-212ENST00000616140 LRPPRCP42704 1394 aaKnown RBP16.68■□□□□ 0.26
CPSF1-212ENST00000616140 RBM33Q96EV2 1170 aaKnown RBP16.68■□□□□ 0.26
CPSF1-212ENST00000616140 ZNF396Q96N95 335 aaPredicted RBP16.68■□□□□ 0.26
CPSF1-212ENST00000616140 BRMS1Q9HCU9 246 aa16.68■□□□□ 0.26
CPSF1-212ENST00000616140 CAMSAP2Q08AD1 1489 aa16.68■□□□□ 0.26
CPSF1-212ENST00000616140 MAGI1Q96QZ7 1491 aaPredicted RBP16.68■□□□□ 0.26
CPSF1-212ENST00000616140 TBC1D2Q9BYX2 928 aa16.67■□□□□ 0.26
CPSF1-212ENST00000616140 TRIM27P14373 513 aa16.67■□□□□ 0.26
CPSF1-212ENST00000616140 PTPN23Q9H3S7 1636 aa16.67■□□□□ 0.26
CPSF1-212ENST00000616140 SMARCA5O60264 1052 aaPredicted RBP16.67■□□□□ 0.26
CPSF1-212ENST00000616140 CCDC158Q5M9N0 1113 aa16.66■□□□□ 0.26
CPSF1-212ENST00000616140 NUTM1Q86Y26 1132 aa16.66■□□□□ 0.26
CPSF1-212ENST00000616140 NAP1L1P55209 391 aaKnown RBP16.66■□□□□ 0.26
CPSF1-212ENST00000616140 TTLL5Q6EMB2 1281 aa16.66■□□□□ 0.26
CPSF1-212ENST00000616140 ALDH1L2Q3SY69 923 aa16.65■□□□□ 0.26
CPSF1-212ENST00000616140 CNNM1Q9NRU3 951 aa16.65■□□□□ 0.26
CPSF1-212ENST00000616140 EMILIN1Q9Y6C2 1016 aa16.65■□□□□ 0.26
CPSF1-212ENST00000616140 STRN4Q9NRL3 753 aa16.65■□□□□ 0.26
CPSF1-212ENST00000616140 PDRG1Q9NUG6 133 aa16.65■□□□□ 0.26
CPSF1-212ENST00000616140 HSP90B2PQ58FF3 399 aa16.64■□□□□ 0.26
CPSF1-212ENST00000616140 NME9Q86XW9 330 aa16.64■□□□□ 0.25
CPSF1-212ENST00000616140 TCEAL9Q9UHQ7 104 aa16.64■□□□□ 0.25
CPSF1-212ENST00000616140 FERMT3Q86UX7 667 aa16.64■□□□□ 0.25
CPSF1-212ENST00000616140 ABCC11Q96J66 1382 aa16.64■□□□□ 0.25
CPSF1-212ENST00000616140 IQGAP2Q13576 1575 aa16.64■□□□□ 0.25
CPSF1-212ENST00000616140 JMYQ8N9B5 988 aa16.64■□□□□ 0.25
CPSF1-212ENST00000616140 SYCE3A1L190 88 aa16.63■□□□□ 0.25
CPSF1-212ENST00000616140 BTBD11A6QL63 1104 aa16.63■□□□□ 0.25
CPSF1-212ENST00000616140 MX1P20591 662 aa16.63■□□□□ 0.25
CPSF1-212ENST00000616140 CABP4P57796 275 aa16.63■□□□□ 0.25
CPSF1-212ENST00000616140 SAMD1Q6SPF0 538 aaPredicted RBP16.63■□□□□ 0.25
CPSF1-212ENST00000616140 CC2D2AQ9P2K1 1620 aa16.63■□□□□ 0.25
CPSF1-212ENST00000616140 F6X3S4 739 aa16.63■□□□□ 0.25
CPSF1-212ENST00000616140 FKBP4Q02790 459 aaKnown RBP eCLIP16.63■□□□□ 0.25
CPSF1-212ENST00000616140 TTC39AQ5SRH9 613 aa16.63■□□□□ 0.25
CPSF1-212ENST00000616140 KIF6Q6ZMV9 814 aa16.63■□□□□ 0.25
CPSF1-212ENST00000616140 DDX54Q8TDD1 881 aaKnown RBP16.63■□□□□ 0.25
CPSF1-212ENST00000616140 OFD1O75665 1012 aa16.62■□□□□ 0.25
CPSF1-212ENST00000616140 BRPF1P55201 1214 aaPredicted RBP16.62■□□□□ 0.25
CPSF1-212ENST00000616140 SPATA32Q96LK8 384 aa16.62■□□□□ 0.25
CPSF1-212ENST00000616140 GNAT3A8MTJ3 354 aa16.62■□□□□ 0.25
CPSF1-212ENST00000616140 STK11IPQ8N1F8 1099 aa16.62■□□□□ 0.25
CPSF1-212ENST00000616140 IGHDP01880 384 aa16.62■□□□□ 0.25
CPSF1-212ENST00000616140 KIF1BPQ96EK5 621 aa16.62■□□□□ 0.25
CPSF1-212ENST00000616140 ZSCAN31Q96LW9 406 aaPredicted RBP16.62■□□□□ 0.25
CPSF1-212ENST00000616140 CASTP20810 708 aaKnown RBP16.61■□□□□ 0.25
CPSF1-212ENST00000616140 CEP126Q9P2H0 1117 aa16.61■□□□□ 0.25
CPSF1-212ENST00000616140 DNAJC5BQ9UF47 199 aa16.61■□□□□ 0.25
CPSF1-212ENST00000616140 XPCQ01831 940 aaPredicted RBP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms