RNA–Protein interactions for RNA: ENST00000609684.2

PCDHB16-201, Transcript of protocadherin beta 16, humanhuman

APPRIS P1 BASIC

Gene PCDHB16, Length 5,001 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB16-201ENST00000609684 PDE4CQ08493 712 aa17.11■□□□□ 0.33
PCDHB16-201ENST00000609684 NKTRP30414 1462 aaKnown RBP17.11■□□□□ 0.33
PCDHB16-201ENST00000609684 SCAF11Q99590 1463 aaKnown RBP17.11■□□□□ 0.33
PCDHB16-201ENST00000609684 MYL6BP14649 208 aa17.11■□□□□ 0.33
PCDHB16-201ENST00000609684 XPCQ01831 940 aaPredicted RBP17.11■□□□□ 0.33
PCDHB16-201ENST00000609684 TBC1D2BQ9UPU7 963 aa17.11■□□□□ 0.33
PCDHB16-201ENST00000609684 PDCP20941 246 aa17.1■□□□□ 0.33
PCDHB16-201ENST00000609684 FBXO31Q5XUX0 539 aaPredicted RBP17.1■□□□□ 0.33
PCDHB16-201ENST00000609684 FIBPO43427 364 aa17.1■□□□□ 0.33
PCDHB16-201ENST00000609684 TOM1L2Q6ZVM7 507 aa17.1■□□□□ 0.33
PCDHB16-201ENST00000609684 ANKRD20A12PQ8NF67 263 aa17.1■□□□□ 0.33
PCDHB16-201ENST00000609684 IL1RAPL2Q9NP60 686 aa17.1■□□□□ 0.33
PCDHB16-201ENST00000609684 SDF4Q9BRK5 362 aa17.09■□□□□ 0.33
PCDHB16-201ENST00000609684 EMILIN1Q9Y6C2 1016 aa17.09■□□□□ 0.33
PCDHB16-201ENST00000609684 CCDC47Q96A33 483 aaKnown RBP17.09■□□□□ 0.33
PCDHB16-201ENST00000609684 SPG7Q9UQ90 795 aa17.09■□□□□ 0.33
PCDHB16-201ENST00000609684 NOS1P29475 1434 aa17.09■□□□□ 0.33
PCDHB16-201ENST00000609684 BTBD11A6QL63 1104 aa17.09■□□□□ 0.33
PCDHB16-201ENST00000609684 MEX3CQ5U5Q3 659 aaKnown RBP17.09■□□□□ 0.33
PCDHB16-201ENST00000609684 DDX54Q8TDD1 881 aaKnown RBP17.09■□□□□ 0.33
PCDHB16-201ENST00000609684 MAPKBP1O60336 1514 aa17.09■□□□□ 0.33
PCDHB16-201ENST00000609684 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.08■□□□□ 0.33
PCDHB16-201ENST00000609684 POGZQ7Z3K3 1410 aa17.08■□□□□ 0.33
PCDHB16-201ENST00000609684 GNAT3A8MTJ3 354 aa17.08■□□□□ 0.32
PCDHB16-201ENST00000609684 HOMER1Q86YM7 354 aa17.08■□□□□ 0.32
PCDHB16-201ENST00000609684 ABCC11Q96J66 1382 aa17.08■□□□□ 0.32
PCDHB16-201ENST00000609684 KDM4AO75164 1064 aa17.08■□□□□ 0.32
PCDHB16-201ENST00000609684 PCMTD1Q96MG8 357 aaPredicted RBP17.08■□□□□ 0.32
PCDHB16-201ENST00000609684 CYP46A1Q9Y6A2 500 aa17.08■□□□□ 0.32
PCDHB16-201ENST00000609684 DUSP27Q5VZP5 1158 aa17.08■□□□□ 0.32
PCDHB16-201ENST00000609684 IFT57Q9NWB7 429 aa17.07■□□□□ 0.32
PCDHB16-201ENST00000609684 CWC22Q9HCG8 908 aaKnown RBP17.07■□□□□ 0.32
PCDHB16-201ENST00000609684 CEP89Q96ST8 783 aa17.07■□□□□ 0.32
PCDHB16-201ENST00000609684 BRPF3Q9ULD4 1205 aa17.07■□□□□ 0.32
PCDHB16-201ENST00000609684 EXOC6BQ9Y2D4 811 aa17.07■□□□□ 0.32
PCDHB16-201ENST00000609684 A0A0U1RQG5 324 aaPredicted RBP17.07■□□□□ 0.32
PCDHB16-201ENST00000609684 IPO7O95373 1038 aaKnown RBP17.06■□□□□ 0.32
PCDHB16-201ENST00000609684 AACSQ86V21 672 aa17.06■□□□□ 0.32
PCDHB16-201ENST00000609684 ALDH1L2Q3SY69 923 aa17.06■□□□□ 0.32
PCDHB16-201ENST00000609684 CCDC158Q5M9N0 1113 aa17.06■□□□□ 0.32
PCDHB16-201ENST00000609684 CNNM1Q9NRU3 951 aa17.06■□□□□ 0.32
PCDHB16-201ENST00000609684 FANCAO15360 1455 aa17.06■□□□□ 0.32
PCDHB16-201ENST00000609684 FAM13BQ9NYF5 915 aa17.06■□□□□ 0.32
PCDHB16-201ENST00000609684 ZC3H6P61129 1189 aaKnown RBP17.05■□□□□ 0.32
PCDHB16-201ENST00000609684 UNC13AQ9UPW8 1703 aa17.05■□□□□ 0.32
PCDHB16-201ENST00000609684 PRDM11Q9NQV5 511 aa17.05■□□□□ 0.32
PCDHB16-201ENST00000609684 UGGT2Q9NYU1 1516 aa17.05■□□□□ 0.32
PCDHB16-201ENST00000609684 TTC39AQ5SRH9 613 aa17.05■□□□□ 0.32
PCDHB16-201ENST00000609684 C14orf93Q9H972 538 aaKnown RBP17.05■□□□□ 0.32
PCDHB16-201ENST00000609684 LRPPRCP42704 1394 aaKnown RBP17.05■□□□□ 0.32
PCDHB16-201ENST00000609684 SART3Q15020 963 aaKnown RBP17.05■□□□□ 0.32
PCDHB16-201ENST00000609684 CCDC39Q9UFE4 941 aa17.04■□□□□ 0.32
PCDHB16-201ENST00000609684 WASLO00401 505 aaPredicted RBP17.04■□□□□ 0.32
PCDHB16-201ENST00000609684 STK3Q13188 491 aa17.03■□□□□ 0.32
PCDHB16-201ENST00000609684 NAT10Q9H0A0 1025 aaKnown RBP17.03■□□□□ 0.32
PCDHB16-201ENST00000609684 TSPY26PQ9H489 355 aa17.03■□□□□ 0.32
PCDHB16-201ENST00000609684 KINO60870 393 aaKnown RBP17.03■□□□□ 0.32
PCDHB16-201ENST00000609684 LETM1O95202 739 aaPredicted RBP17.03■□□□□ 0.32
PCDHB16-201ENST00000609684 XBP1P17861 261 aa17.03■□□□□ 0.32
PCDHB16-201ENST00000609684 CWC27Q6UX04 472 aaKnown RBP17.03■□□□□ 0.32
PCDHB16-201ENST00000609684 MTMR7Q9Y216 660 aa17.03■□□□□ 0.32
PCDHB16-201ENST00000609684 DHX29Q7Z478 1369 aaKnown RBP17.03■□□□□ 0.32
PCDHB16-201ENST00000609684 ATP2B1P20020 1258 aa17.03■□□□□ 0.32
PCDHB16-201ENST00000609684 BRMS1Q9HCU9 246 aa17.03■□□□□ 0.32
PCDHB16-201ENST00000609684 CEBPZQ03701 1054 aaKnown RBP17.02■□□□□ 0.32
PCDHB16-201ENST00000609684 RRP12Q5JTH9 1297 aaKnown RBP17.02■□□□□ 0.32
PCDHB16-201ENST00000609684 KCNH5Q8NCM2 988 aa17.02■□□□□ 0.31
PCDHB16-201ENST00000609684 WDR33Q9C0J8 1336 aaKnown RBP17.02■□□□□ 0.31
PCDHB16-201ENST00000609684 TRIM27P14373 513 aa17.01■□□□□ 0.31
PCDHB16-201ENST00000609684 NUTM1Q86Y26 1132 aa17.01■□□□□ 0.31
PCDHB16-201ENST00000609684 TRIM5Q9C035 493 aa17.01■□□□□ 0.31
PCDHB16-201ENST00000609684 MCM4P33991 863 aa17.01■□□□□ 0.31
PCDHB16-201ENST00000609684 SMARCA5O60264 1052 aaPredicted RBP17.01■□□□□ 0.31
PCDHB16-201ENST00000609684 ANKRD1Q15327 319 aa17.01■□□□□ 0.31
PCDHB16-201ENST00000609684 OLFM4Q6UX06 510 aa17.01■□□□□ 0.31
PCDHB16-201ENST00000609684 TCEAL9Q9UHQ7 104 aa17.01■□□□□ 0.31
PCDHB16-201ENST00000609684 CIZ1Q9ULV3 898 aaPredicted RBP17.01■□□□□ 0.31
PCDHB16-201ENST00000609684 CCDC57Q2TAC2 916 aa17■□□□□ 0.31
PCDHB16-201ENST00000609684 RAPGEF6Q8TEU7 1601 aa17■□□□□ 0.31
PCDHB16-201ENST00000609684 USHBP1Q8N6Y0 703 aa17■□□□□ 0.31
PCDHB16-201ENST00000609684 DDX24Q9GZR7 859 aaKnown RBP eCLIP17■□□□□ 0.31
PCDHB16-201ENST00000609684 AEBP1Q8IUX7 1158 aa16.99■□□□□ 0.31
PCDHB16-201ENST00000609684 BLOC1S2Q6QNY1 142 aa16.99■□□□□ 0.31
PCDHB16-201ENST00000609684 CTDP1Q9Y5B0 961 aaPredicted RBP16.99■□□□□ 0.31
PCDHB16-201ENST00000609684 ATP10BO94823 1461 aa16.99■□□□□ 0.31
PCDHB16-201ENST00000609684 NUP153P49790 1475 aaKnown RBP16.99■□□□□ 0.31
PCDHB16-201ENST00000609684 JAKMIP1Q96N16 626 aaKnown RBP16.99■□□□□ 0.31
PCDHB16-201ENST00000609684 R3HCC1Q9Y3T6 440 aaKnown RBP16.99■□□□□ 0.31
PCDHB16-201ENST00000609684 NSD2O96028 1365 aa16.99■□□□□ 0.31
PCDHB16-201ENST00000609684 STK38Q15208 465 aa16.99■□□□□ 0.31
PCDHB16-201ENST00000609684 AMOTL2Q9Y2J4 779 aa16.99■□□□□ 0.31
PCDHB16-201ENST00000609684 F6X3S4 739 aa16.98■□□□□ 0.31
PCDHB16-201ENST00000609684 DENND4BO75064 1496 aaPredicted RBP16.98■□□□□ 0.31
PCDHB16-201ENST00000609684 MX1P20591 662 aa16.98■□□□□ 0.31
PCDHB16-201ENST00000609684 CCDC70Q6NSX1 233 aa16.98■□□□□ 0.31
PCDHB16-201ENST00000609684 ZNF396Q96N95 335 aaPredicted RBP16.98■□□□□ 0.31
PCDHB16-201ENST00000609684 LARP1BQ659C4 914 aaKnown RBP16.98■□□□□ 0.31
PCDHB16-201ENST00000609684 FKBP4Q02790 459 aaKnown RBP eCLIP16.98■□□□□ 0.31
PCDHB16-201ENST00000609684 TAF7Q15545 349 aaPredicted RBP16.98■□□□□ 0.31
PCDHB16-201ENST00000609684 RALGAPBQ86X10 1494 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms