RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 RBM33Q96EV2 1170 aaKnown RBP13.71□□□□□ -0.21
VPS4B-206ENST00000591475 NCOA3Q9Y6Q9 1424 aa13.71□□□□□ -0.21
VPS4B-206ENST00000591475 PRR36Q9H6K5 1346 aa13.71□□□□□ -0.21
VPS4B-206ENST00000591475 CDC42BPGQ6DT37 1551 aa13.7□□□□□ -0.22
VPS4B-206ENST00000591475 ANKARQ7Z5J8 1434 aa13.7□□□□□ -0.22
VPS4B-206ENST00000591475 NUTM2FA1L443 756 aa13.69□□□□□ -0.22
VPS4B-206ENST00000591475 C19orf44Q9H6X5 657 aa13.69□□□□□ -0.22
VPS4B-206ENST00000591475 SMC4Q9NTJ3 1288 aa13.69□□□□□ -0.22
VPS4B-206ENST00000591475 CD163L1Q9NR16 1453 aa13.69□□□□□ -0.22
VPS4B-206ENST00000591475 PLEKHG3A1L390 1219 aa13.69□□□□□ -0.22
VPS4B-206ENST00000591475 HDAC1Q13547 482 aaPredicted RBP13.69□□□□□ -0.22
VPS4B-206ENST00000591475 ZNF692Q9BU19 519 aaPredicted RBP13.69□□□□□ -0.22
VPS4B-206ENST00000591475 DDX19BQ9UMR2 479 aa13.69□□□□□ -0.22
VPS4B-206ENST00000591475 NALCNQ8IZF0 1738 aa13.69□□□□□ -0.22
VPS4B-206ENST00000591475 TMEM94Q12767 1356 aa13.69□□□□□ -0.22
VPS4B-206ENST00000591475 CPSF1Q10570 1443 aaKnown RBP13.68□□□□□ -0.22
VPS4B-206ENST00000591475 C22orf23Q9BZE7 217 aa13.68□□□□□ -0.22
VPS4B-206ENST00000591475 EXOSC9Q06265 439 aaKnown RBP13.68□□□□□ -0.22
VPS4B-206ENST00000591475 TSR2Q969E8 191 aaKnown RBP13.68□□□□□ -0.22
VPS4B-206ENST00000591475 ZNF335Q9H4Z2 1342 aaPredicted RBP13.67□□□□□ -0.22
VPS4B-206ENST00000591475 IL16Q14005 1332 aa13.67□□□□□ -0.22
VPS4B-206ENST00000591475 COL3A1P02461 1466 aaPredicted RBP13.67□□□□□ -0.22
VPS4B-206ENST00000591475 STRCP1A6NGW2 1772 aa13.66□□□□□ -0.22
VPS4B-206ENST00000591475 TRIM27P14373 513 aa13.66□□□□□ -0.22
VPS4B-206ENST00000591475 TMPOP42166 694 aaKnown RBP13.66□□□□□ -0.22
VPS4B-206ENST00000591475 ATF7IPQ6VMQ6 1270 aa13.66□□□□□ -0.22
VPS4B-206ENST00000591475 PLEKHF1Q96S99 279 aa13.66□□□□□ -0.22
VPS4B-206ENST00000591475 FMN2Q9NZ56 1722 aa13.66□□□□□ -0.22
VPS4B-206ENST00000591475 MFAP1P55081 439 aaKnown RBP13.66□□□□□ -0.22
VPS4B-206ENST00000591475 ITPRIPQ8IWB1 547 aa13.66□□□□□ -0.22
VPS4B-206ENST00000591475 CHMP5Q9NZZ3 219 aa13.66□□□□□ -0.22
VPS4B-206ENST00000591475 U2SURPO15042 1029 aaKnown RBP13.65□□□□□ -0.22
VPS4B-206ENST00000591475 MCM4P33991 863 aa13.65□□□□□ -0.22
VPS4B-206ENST00000591475 SSH1Q8WYL5 1049 aa13.65□□□□□ -0.22
VPS4B-206ENST00000591475 ACEP12821 1306 aa13.65□□□□□ -0.22
VPS4B-206ENST00000591475 DCCP43146 1447 aa13.65□□□□□ -0.22
VPS4B-206ENST00000591475 TOPAZ1Q8N9V7 1692 aa13.65□□□□□ -0.22
VPS4B-206ENST00000591475 PRKCSHP14314 528 aaPredicted RBP13.64□□□□□ -0.23
VPS4B-206ENST00000591475 SMC5Q8IY18 1101 aa13.64□□□□□ -0.23
VPS4B-206ENST00000591475 RSPH6AQ9H0K4 717 aa13.64□□□□□ -0.23
VPS4B-206ENST00000591475 TRIM35Q9UPQ4 493 aa13.64□□□□□ -0.23
VPS4B-206ENST00000591475 EDC4Q6P2E9 1401 aaKnown RBP13.64□□□□□ -0.23
VPS4B-206ENST00000591475 ATF3P18847 181 aa13.64□□□□□ -0.23
VPS4B-206ENST00000591475 SPRYD3Q8NCJ5 442 aa13.64□□□□□ -0.23
VPS4B-206ENST00000591475 ITSN1Q15811 1721 aa13.64□□□□□ -0.23
VPS4B-206ENST00000591475 NGDNQ8NEJ9 315 aaKnown RBP13.63□□□□□ -0.23
VPS4B-206ENST00000591475 LRRC7Q96NW7 1537 aa13.63□□□□□ -0.23
VPS4B-206ENST00000591475 MSH6P52701 1360 aa13.63□□□□□ -0.23
VPS4B-206ENST00000591475 KIF16BQ96L93 1317 aa13.63□□□□□ -0.23
VPS4B-206ENST00000591475 GOLGA6L3A6NEY3 463 aa13.63□□□□□ -0.23
VPS4B-206ENST00000591475 IPO8O15397 1037 aaKnown RBP13.63□□□□□ -0.23
VPS4B-206ENST00000591475 CADPS2Q86UW7 1296 aa13.63□□□□□ -0.23
VPS4B-206ENST00000591475 HSCBQ8IWL3 235 aa13.63□□□□□ -0.23
VPS4B-206ENST00000591475 NOB1Q9ULX3 412 aaKnown RBP13.63□□□□□ -0.23
VPS4B-206ENST00000591475 KIF20BQ96Q89 1820 aa13.62□□□□□ -0.23
VPS4B-206ENST00000591475 FYB1O15117 783 aa13.62□□□□□ -0.23
VPS4B-206ENST00000591475 PNNQ9H307 717 aaKnown RBP13.62□□□□□ -0.23
VPS4B-206ENST00000591475 ESCO1Q5FWF5 840 aa13.61□□□□□ -0.23
VPS4B-206ENST00000591475 TMEM57Q8N5G2 664 aa13.61□□□□□ -0.23
VPS4B-206ENST00000591475 GGNBP2Q9H3C7 697 aa13.61□□□□□ -0.23
VPS4B-206ENST00000591475 ZBTB40Q9NUA8 1239 aa13.61□□□□□ -0.23
VPS4B-206ENST00000591475 PHF8Q9UPP1 1060 aa13.61□□□□□ -0.23
VPS4B-206ENST00000591475 FSD2A1L4K1 749 aa13.61□□□□□ -0.23
VPS4B-206ENST00000591475 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.61□□□□□ -0.23
VPS4B-206ENST00000591475 USP6P35125 1406 aa13.61□□□□□ -0.23
VPS4B-206ENST00000591475 RIPK4P57078 832 aa13.6□□□□□ -0.23
VPS4B-206ENST00000591475 ALDH1L2Q3SY69 923 aa13.59□□□□□ -0.23
VPS4B-206ENST00000591475 RGPD8O14715 1765 aaPredicted RBP13.59□□□□□ -0.23
VPS4B-206ENST00000591475 AKAP12Q02952 1782 aa13.59□□□□□ -0.23
VPS4B-206ENST00000591475 MON2Q7Z3U7 1717 aa13.59□□□□□ -0.23
VPS4B-206ENST00000591475 TRAK2O60296 914 aa13.59□□□□□ -0.23
VPS4B-206ENST00000591475 XRCC6P12956 609 aaKnown RBP eCLIP13.59□□□□□ -0.23
VPS4B-206ENST00000591475 NUCB1Q02818 461 aa13.59□□□□□ -0.23
VPS4B-206ENST00000591475 DDX11L8A8MPP1 907 aa13.58□□□□□ -0.24
VPS4B-206ENST00000591475 DIAPH1O60610 1272 aaKnown RBP13.58□□□□□ -0.24
VPS4B-206ENST00000591475 EIF5BO60841 1220 aaKnown RBP13.58□□□□□ -0.24
VPS4B-206ENST00000591475 RBM25P49756 843 aaKnown RBP13.58□□□□□ -0.24
VPS4B-206ENST00000591475 C1orf167Q5SNV9 1468 aa13.58□□□□□ -0.24
VPS4B-206ENST00000591475 TTC21BQ7Z4L5 1316 aa13.58□□□□□ -0.24
VPS4B-206ENST00000591475 MST1RQ04912 1400 aa13.58□□□□□ -0.24
VPS4B-206ENST00000591475 SNX21Q969T3 373 aa13.57□□□□□ -0.24
VPS4B-206ENST00000591475 ORAI2Q96SN7 254 aa13.57□□□□□ -0.24
VPS4B-206ENST00000591475 TTC21AQ8NDW8 1320 aa13.57□□□□□ -0.24
VPS4B-206ENST00000591475 SSH2Q76I76 1423 aa13.57□□□□□ -0.24
VPS4B-206ENST00000591475 GZF1Q9H116 711 aaPredicted RBP13.57□□□□□ -0.24
VPS4B-206ENST00000591475 RRAGDQ9NQL2 400 aaPredicted RBP13.57□□□□□ -0.24
VPS4B-206ENST00000591475 PNPLA6Q8IY17 1366 aa13.56□□□□□ -0.24
VPS4B-206ENST00000591475 ZNF428Q96B54 188 aa13.56□□□□□ -0.24
VPS4B-206ENST00000591475 PSME1Q06323 249 aa13.56□□□□□ -0.24
VPS4B-206ENST00000591475 CHD1LQ86WJ1 897 aa13.56□□□□□ -0.24
VPS4B-206ENST00000591475 NME9Q86XW9 330 aa13.56□□□□□ -0.24
VPS4B-206ENST00000591475 COG3Q96JB2 828 aa13.56□□□□□ -0.24
VPS4B-206ENST00000591475 ARXQ96QS3 562 aa13.56□□□□□ -0.24
VPS4B-206ENST00000591475 CHMP4BQ9H444 224 aaKnown RBP13.56□□□□□ -0.24
VPS4B-206ENST00000591475 XIRP1Q702N8 1843 aaKnown RBP13.55□□□□□ -0.24
VPS4B-206ENST00000591475 BRPF1P55201 1214 aaPredicted RBP13.55□□□□□ -0.24
VPS4B-206ENST00000591475 LNPKQ9C0E8 428 aa13.55□□□□□ -0.24
VPS4B-206ENST00000591475 NRKQ7Z2Y5 1582 aa13.55□□□□□ -0.24
VPS4B-206ENST00000591475 FCHSD2O94868 740 aa13.54□□□□□ -0.24
VPS4B-206ENST00000591475 DDIT3P35638 169 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms