RNA–Protein interactions for RNA: ENST00000590574.5

SMARCA4-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMARCA4, Length 5,282 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-215ENST00000590574 MIS18AQ9NYP9 233 aa20.75■□□□□ 0.91
SMARCA4-215ENST00000590574 CCDC61Q9Y6R9 512 aa20.75■□□□□ 0.91
SMARCA4-215ENST00000590574 PSME1Q06323 249 aa20.75■□□□□ 0.91
SMARCA4-215ENST00000590574 CNTROBQ8N137 903 aa20.75■□□□□ 0.91
SMARCA4-215ENST00000590574 FAM184AQ8NB25 1140 aa20.75■□□□□ 0.91
SMARCA4-215ENST00000590574 TNPO1Q92973 898 aaKnown RBP20.75■□□□□ 0.91
SMARCA4-215ENST00000590574 MBD3O95983 291 aa20.74■□□□□ 0.91
SMARCA4-215ENST00000590574 FYB1O15117 783 aa20.74■□□□□ 0.91
SMARCA4-215ENST00000590574 FAM13BQ9NYF5 915 aa20.74■□□□□ 0.91
SMARCA4-215ENST00000590574 VSIG10Q8N0Z9 540 aa20.73■□□□□ 0.91
SMARCA4-215ENST00000590574 NUCB1Q02818 461 aa20.73■□□□□ 0.91
SMARCA4-215ENST00000590574 BMP2KLQ5H9B9 411 aa20.73■□□□□ 0.91
SMARCA4-215ENST00000590574 TBC1D9Q6ZT07 1266 aa20.72■□□□□ 0.91
SMARCA4-215ENST00000590574 TAF7LQ5H9L4 462 aa20.72■□□□□ 0.91
SMARCA4-215ENST00000590574 R3HCC1Q9Y3T6 440 aaKnown RBP20.72■□□□□ 0.91
SMARCA4-215ENST00000590574 DDX58O95786 925 aaKnown RBP20.72■□□□□ 0.91
SMARCA4-215ENST00000590574 MBIPQ9NS73 344 aa20.72■□□□□ 0.91
SMARCA4-215ENST00000590574 CCDC39Q9UFE4 941 aa20.72■□□□□ 0.91
SMARCA4-215ENST00000590574 ABTB2Q8N961 1025 aa20.72■□□□□ 0.91
SMARCA4-215ENST00000590574 ABCC2Q92887 1545 aa20.71■□□□□ 0.91
SMARCA4-215ENST00000590574 KIF3AQ9Y496 699 aa20.71■□□□□ 0.91
SMARCA4-215ENST00000590574 RNF20Q5VTR2 975 aa20.71■□□□□ 0.91
SMARCA4-215ENST00000590574 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.71■□□□□ 0.91
SMARCA4-215ENST00000590574 MAP4K4O95819 1239 aaPredicted RBP20.7■□□□□ 0.91
SMARCA4-215ENST00000590574 AIMP1Q12904 312 aaKnown RBP20.7■□□□□ 0.9
SMARCA4-215ENST00000590574 HDGFL1Q5TGJ6 251 aa20.7■□□□□ 0.9
SMARCA4-215ENST00000590574 ESPNB1AK53 854 aa20.7■□□□□ 0.9
SMARCA4-215ENST00000590574 SSFA2P28290 1259 aa20.7■□□□□ 0.9
SMARCA4-215ENST00000590574 TSPY26PQ9H489 355 aa20.69■□□□□ 0.9
SMARCA4-215ENST00000590574 WDR7Q9Y4E6 1490 aa20.69■□□□□ 0.9
SMARCA4-215ENST00000590574 EXOC6BQ9Y2D4 811 aa20.69■□□□□ 0.9
SMARCA4-215ENST00000590574 MAGI2Q86UL8 1455 aa20.69■□□□□ 0.9
SMARCA4-215ENST00000590574 FAM83GA6ND36 823 aa20.69■□□□□ 0.9
SMARCA4-215ENST00000590574 TPM4P67936 248 aa20.69■□□□□ 0.9
SMARCA4-215ENST00000590574 CLASRPQ8N2M8 674 aaKnown RBP20.68■□□□□ 0.9
SMARCA4-215ENST00000590574 WASLO00401 505 aaPredicted RBP20.68■□□□□ 0.9
SMARCA4-215ENST00000590574 BCORL1Q5H9F3 1711 aa20.68■□□□□ 0.9
SMARCA4-215ENST00000590574 SF3A1Q15459 793 aaKnown RBP20.67■□□□□ 0.9
SMARCA4-215ENST00000590574 TTC5Q8N0Z6 440 aa20.67■□□□□ 0.9
SMARCA4-215ENST00000590574 ASXL2Q76L83 1435 aa20.67■□□□□ 0.9
SMARCA4-215ENST00000590574 GOLGA6L19H0YKK7 550 aa20.67■□□□□ 0.9
SMARCA4-215ENST00000590574 BICD2Q8TD16 824 aa20.66■□□□□ 0.9
SMARCA4-215ENST00000590574 ABCA8O94911 1581 aa20.66■□□□□ 0.9
SMARCA4-215ENST00000590574 SAMD9LQ8IVG5 1584 aa20.66■□□□□ 0.9
SMARCA4-215ENST00000590574 SLC26A8Q96RN1 970 aa20.65■□□□□ 0.9
SMARCA4-215ENST00000590574 IL1RAPL2Q9NP60 686 aa20.65■□□□□ 0.9
SMARCA4-215ENST00000590574 RIC3Q7Z5B4 369 aa20.65■□□□□ 0.9
SMARCA4-215ENST00000590574 SRCIN1Q9C0H9 1055 aa20.64■□□□□ 0.9
SMARCA4-215ENST00000590574 ZNF518AQ6AHZ1 1483 aa20.64■□□□□ 0.9
SMARCA4-215ENST00000590574 F6X3S4 739 aa20.64■□□□□ 0.89
SMARCA4-215ENST00000590574 BECN2A8MW95 431 aa20.63■□□□□ 0.89
SMARCA4-215ENST00000590574 FIBPO43427 364 aa20.63■□□□□ 0.89
SMARCA4-215ENST00000590574 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.63■□□□□ 0.89
SMARCA4-215ENST00000590574 TPM2P07951 284 aa20.63■□□□□ 0.89
SMARCA4-215ENST00000590574 ARHGAP45Q92619 1136 aa20.62■□□□□ 0.89
SMARCA4-215ENST00000590574 A0A1W2PP64 1363 aa20.62■□□□□ 0.89
SMARCA4-215ENST00000590574 FSD1Q9BTV5 496 aa20.62■□□□□ 0.89
SMARCA4-215ENST00000590574 MRPL50Q8N5N7 158 aaKnown RBP20.62■□□□□ 0.89
SMARCA4-215ENST00000590574 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.62■□□□□ 0.895e-7■■□□□ 13.4
SMARCA4-215ENST00000590574 PUS7Q96PZ0 661 aaKnown RBP20.62■□□□□ 0.89
SMARCA4-215ENST00000590574 WDR33Q9C0J8 1336 aaKnown RBP20.61■□□□□ 0.89
SMARCA4-215ENST00000590574 MX1P20591 662 aa20.61■□□□□ 0.89
SMARCA4-215ENST00000590574 ZBTB40Q9NUA8 1239 aa20.61■□□□□ 0.89
SMARCA4-215ENST00000590574 FOSBP53539 338 aa20.61■□□□□ 0.89
SMARCA4-215ENST00000590574 SRGAP3O43295 1099 aa20.6■□□□□ 0.89
SMARCA4-215ENST00000590574 PSMA5P28066 241 aa20.6■□□□□ 0.89
SMARCA4-215ENST00000590574 NUTM1Q86Y26 1132 aa20.6■□□□□ 0.89
SMARCA4-215ENST00000590574 KDM5DQ9BY66 1539 aa20.6■□□□□ 0.89
SMARCA4-215ENST00000590574 TTC22Q5TAA0 569 aa20.6■□□□□ 0.89
SMARCA4-215ENST00000590574 LRRIQ1Q96JM4 1722 aa20.6■□□□□ 0.89
SMARCA4-215ENST00000590574 LETM1O95202 739 aaPredicted RBP20.6■□□□□ 0.89
SMARCA4-215ENST00000590574 ATP7AQ04656 1500 aa20.59■□□□□ 0.89
SMARCA4-215ENST00000590574 GNAT3A8MTJ3 354 aa20.59■□□□□ 0.89
SMARCA4-215ENST00000590574 SMC5Q8IY18 1101 aa20.59■□□□□ 0.89
SMARCA4-215ENST00000590574 SYCE3A1L190 88 aa20.58■□□□□ 0.89
SMARCA4-215ENST00000590574 XRCC6P12956 609 aaKnown RBP eCLIP20.58■□□□□ 0.89
SMARCA4-215ENST00000590574 SASS6Q6UVJ0 657 aa20.58■□□□□ 0.89
SMARCA4-215ENST00000590574 PLEKHO1Q53GL0 409 aaPredicted RBP20.58■□□□□ 0.89
SMARCA4-215ENST00000590574 PTPRCP08575 1304 aa20.58■□□□□ 0.88
SMARCA4-215ENST00000590574 C8orf58Q8NAV2 365 aa20.58■□□□□ 0.88
SMARCA4-215ENST00000590574 POLKQ9UBT6 870 aa20.58■□□□□ 0.88
SMARCA4-215ENST00000590574 KDM5AP29375 1690 aaKnown RBP20.58■□□□□ 0.88
SMARCA4-215ENST00000590574 NPHP1O15259 732 aa20.58■□□□□ 0.88
SMARCA4-215ENST00000590574 CWC27Q6UX04 472 aaKnown RBP20.57■□□□□ 0.88
SMARCA4-215ENST00000590574 TSPYL6Q8N831 410 aa20.57■□□□□ 0.88
SMARCA4-215ENST00000590574 RAPGEF4Q8WZA2 1011 aa20.57■□□□□ 0.88
SMARCA4-215ENST00000590574 PRDM15P57071 1507 aaPredicted RBP20.57■□□□□ 0.88
SMARCA4-215ENST00000590574 PTPRTO14522 1441 aa20.56■□□□□ 0.88
SMARCA4-215ENST00000590574 ERC1Q8IUD2 1116 aa20.56■□□□□ 0.88
SMARCA4-215ENST00000590574 ZNF592Q92610 1267 aa20.56■□□□□ 0.88
SMARCA4-215ENST00000590574 MPNDQ8N594 471 aa20.56■□□□□ 0.88
SMARCA4-215ENST00000590574 UPF3BQ9BZI7 483 aaKnown RBP20.56■□□□□ 0.88
SMARCA4-215ENST00000590574 SNX21Q969T3 373 aa20.56■□□□□ 0.88
SMARCA4-215ENST00000590574 CYP46A1Q9Y6A2 500 aa20.56■□□□□ 0.88
SMARCA4-215ENST00000590574 BAG4O95429 457 aaKnown RBP20.56■□□□□ 0.88
SMARCA4-215ENST00000590574 ESCO1Q5FWF5 840 aa20.56■□□□□ 0.88
SMARCA4-215ENST00000590574 CHMP4CQ96CF2 233 aa20.56■□□□□ 0.88
SMARCA4-215ENST00000590574 TRMT2AQ8IZ69 625 aaKnown RBP20.55■□□□□ 0.88
SMARCA4-215ENST00000590574 PANK2Q9BZ23 570 aa20.55■□□□□ 0.88
SMARCA4-215ENST00000590574 RBM42Q9BTD8 480 aaKnown RBP20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms