RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	SBNO1	A3KN83	1393 aa		20.13	■□□□□ 0.81
DDX39A-209	ENST00000589318	TMPO	P42166	694 aa	Known RBP	20.12	■□□□□ 0.81
DDX39A-209	ENST00000589318	PPP4R2	Q9NY27	417 aa		20.12	■□□□□ 0.81
DDX39A-209	ENST00000589318		E9PSI1	815 aa		20.12	■□□□□ 0.81
DDX39A-209	ENST00000589318	ATF3	P18847	181 aa		20.12	■□□□□ 0.81
DDX39A-209	ENST00000589318	HSP90AB2P	Q58FF8	381 aa		20.12	■□□□□ 0.81
DDX39A-209	ENST00000589318	PNN	Q9H307	717 aa	Known RBP	20.12	■□□□□ 0.81
DDX39A-209	ENST00000589318	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	20.11	■□□□□ 0.81
DDX39A-209	ENST00000589318	NFAT5	O94916	1531 aa		20.11	■□□□□ 0.81
DDX39A-209	ENST00000589318	HMOX1	P09601	288 aa		20.11	■□□□□ 0.81
DDX39A-209	ENST00000589318	PRKAR2B	P31323	418 aa		20.11	■□□□□ 0.81
DDX39A-209	ENST00000589318	MAPK8IP3	Q9UPT6	1336 aa		20.11	■□□□□ 0.81
DDX39A-209	ENST00000589318	FLT4	P35916	1363 aa		20.11	■□□□□ 0.81
DDX39A-209	ENST00000589318	LTN1	O94822	1766 aa		20.11	■□□□□ 0.81
DDX39A-209	ENST00000589318	WDR63	Q8IWG1	891 aa		20.1	■□□□□ 0.81
DDX39A-209	ENST00000589318	MSH6	P52701	1360 aa		20.1	■□□□□ 0.81
DDX39A-209	ENST00000589318	CADPS2	Q86UW7	1296 aa		20.09	■□□□□ 0.81
DDX39A-209	ENST00000589318	TRIM35	Q9UPQ4	493 aa		20.09	■□□□□ 0.81
DDX39A-209	ENST00000589318	ALS2	Q96Q42	1657 aa		20.09	■□□□□ 0.81
DDX39A-209	ENST00000589318	KIF24	Q5T7B8	1368 aa		20.08	■□□□□ 0.81
DDX39A-209	ENST00000589318	XPC	Q01831	940 aa	Predicted RBP	20.08	■□□□□ 0.81
DDX39A-209	ENST00000589318	RRP1	P56182	461 aa	Known RBP	20.08	■□□□□ 0.8
DDX39A-209	ENST00000589318	PHACTR3	Q96KR7	559 aa		20.08	■□□□□ 0.8
DDX39A-209	ENST00000589318	SLIT3	O75094	1523 aa		20.07	■□□□□ 0.8
DDX39A-209	ENST00000589318	DLG5	Q8TDM6	1919 aa		20.07	■□□□□ 0.8
DDX39A-209	ENST00000589318	PHRF1	Q9P1Y6	1649 aa	Known RBP	20.06	■□□□□ 0.8
DDX39A-209	ENST00000589318	KRT28	Q7Z3Y7	464 aa		20.06	■□□□□ 0.8
DDX39A-209	ENST00000589318	NOP58	Q9Y2X3	529 aa	Known RBP	20.06	■□□□□ 0.8
DDX39A-209	ENST00000589318	HOXC9	P31274	260 aa		20.04	■□□□□ 0.8
DDX39A-209	ENST00000589318	AMPH	P49418	695 aa		20.04	■□□□□ 0.8
DDX39A-209	ENST00000589318	RIPK4	P57078	832 aa		20.04	■□□□□ 0.8
DDX39A-209	ENST00000589318	AEBP1	Q8IUX7	1158 aa		20.04	■□□□□ 0.8
DDX39A-209	ENST00000589318	RTL1	A6NKG5	1358 aa		20.03	■□□□□ 0.8
DDX39A-209	ENST00000589318	ARHGEF10	O15013	1369 aa		20.03	■□□□□ 0.8
DDX39A-209	ENST00000589318	USP19	O94966	1318 aa		20.03	■□□□□ 0.8
DDX39A-209	ENST00000589318	NFE2L2	Q16236	605 aa		20.02	■□□□□ 0.8
DDX39A-209	ENST00000589318	SULT6B1	Q6IMI4	303 aa		20.02	■□□□□ 0.79
DDX39A-209	ENST00000589318	DDX17	Q92841	729 aa	Known RBP	20.01	■□□□□ 0.79
DDX39A-209	ENST00000589318	PXDN	Q92626	1479 aa		20	■□□□□ 0.79
DDX39A-209	ENST00000589318	KDR	P35968	1356 aa		20	■□□□□ 0.79
DDX39A-209	ENST00000589318	KCNH5	Q8NCM2	988 aa		20	■□□□□ 0.79
DDX39A-209	ENST00000589318	IGSF1	Q8N6C5	1336 aa		20	■□□□□ 0.79
DDX39A-209	ENST00000589318	NEFM	P07197	916 aa		20	■□□□□ 0.79
DDX39A-209	ENST00000589318	MED1	Q15648	1581 aa	Predicted RBP	19.99	■□□□□ 0.79
DDX39A-209	ENST00000589318	IL16	Q14005	1332 aa		19.99	■□□□□ 0.79
DDX39A-209	ENST00000589318	EYA1	Q99502	592 aa		19.98	■□□□□ 0.79
DDX39A-209	ENST00000589318	NPHP3	Q7Z494	1330 aa		19.98	■□□□□ 0.79
DDX39A-209	ENST00000589318	GC	P02774	474 aa		19.98	■□□□□ 0.79
DDX39A-209	ENST00000589318	BRINP3	Q76B58	766 aa		19.97	■□□□□ 0.79
DDX39A-209	ENST00000589318	IP6K1	Q92551	441 aa		19.97	■□□□□ 0.79
DDX39A-209	ENST00000589318	PLIN1	O60240	522 aa		19.96	■□□□□ 0.79
DDX39A-209	ENST00000589318	MYH16	Q9H6N6	1097 aa		19.96	■□□□□ 0.79
DDX39A-209	ENST00000589318	CRYBG1	Q9Y4K1	1723 aa		19.96	■□□□□ 0.79
DDX39A-209	ENST00000589318	LMOD2	Q6P5Q4	547 aa		19.95	■□□□□ 0.78
DDX39A-209	ENST00000589318	ARHGEF25	Q86VW2	580 aa		19.95	■□□□□ 0.78
DDX39A-209	ENST00000589318	TNS3	Q68CZ2	1445 aa		19.95	■□□□□ 0.78
DDX39A-209	ENST00000589318	RTL5	Q5HYW3	569 aa	Predicted RBP	19.94	■□□□□ 0.78
DDX39A-209	ENST00000589318	TSR2	Q969E8	191 aa	Known RBP	19.94	■□□□□ 0.78
DDX39A-209	ENST00000589318	RGPD2	P0DJD1	1756 aa		19.93	■□□□□ 0.78
DDX39A-209	ENST00000589318	SLAIN2	Q9P270	581 aa		19.93	■□□□□ 0.78
DDX39A-209	ENST00000589318	THUMPD2	Q9BTF0	503 aa	Known RBP	19.92	■□□□□ 0.78
DDX39A-209	ENST00000589318	RGPD5	Q99666	1765 aa		19.91	■□□□□ 0.78
DDX39A-209	ENST00000589318	SPATA31A3	Q5VYP0	1347 aa		19.91	■□□□□ 0.78
DDX39A-209	ENST00000589318	BCAR3	O75815	825 aa		19.91	■□□□□ 0.78
DDX39A-209	ENST00000589318	LMOD3	Q0VAK6	560 aa		19.9	■□□□□ 0.78
DDX39A-209	ENST00000589318	LTV1	Q96GA3	475 aa	Predicted RBP	19.9	■□□□□ 0.78
DDX39A-209	ENST00000589318	ANO8	Q9HCE9	1232 aa	Predicted RBP	19.9	■□□□□ 0.78
DDX39A-209	ENST00000589318	FAM83G	A6ND36	823 aa		19.89	■□□□□ 0.77
DDX39A-209	ENST00000589318	C20orf194	Q5TEA3	1177 aa		19.89	■□□□□ 0.77
DDX39A-209	ENST00000589318	EXOC6	Q8TAG9	804 aa		19.89	■□□□□ 0.77
DDX39A-209	ENST00000589318	CAMTA1	Q9Y6Y1	1673 aa		19.88	■□□□□ 0.77
DDX39A-209	ENST00000589318	PLEKHG5	O94827	1062 aa		19.88	■□□□□ 0.77
DDX39A-209	ENST00000589318	RARS	P54136	660 aa	Known RBP	19.88	■□□□□ 0.77
DDX39A-209	ENST00000589318	NHSL1	Q5SYE7	1610 aa		19.88	■□□□□ 0.77
DDX39A-209	ENST00000589318	COL18A1	P39060	1754 aa		19.88	■□□□□ 0.77
DDX39A-209	ENST00000589318	ZNF853	P0CG23	659 aa		19.88	■□□□□ 0.77
DDX39A-209	ENST00000589318	LTBP4	Q8N2S1	1624 aa		19.87	■□□□□ 0.77
DDX39A-209	ENST00000589318	SOS2	Q07890	1332 aa	Predicted RBP	19.87	■□□□□ 0.77
DDX39A-209	ENST00000589318	NCAPD2	Q15021	1401 aa		19.87	■□□□□ 0.77
DDX39A-209	ENST00000589318	EXOSC9	Q06265	439 aa	Known RBP	19.87	■□□□□ 0.77
DDX39A-209	ENST00000589318	MTHFSD	Q2M296	383 aa	Known RBP	19.87	■□□□□ 0.77
DDX39A-209	ENST00000589318	B4GALNT3	Q6L9W6	998 aa		19.87	■□□□□ 0.77
DDX39A-209	ENST00000589318	ZBTB7C	A1YPR0	619 aa		19.86	■□□□□ 0.77
DDX39A-209	ENST00000589318	CALD1	Q05682	793 aa	Known RBP	19.86	■□□□□ 0.77
DDX39A-209	ENST00000589318	NBPF6	Q5VWK0	638 aa		19.86	■□□□□ 0.77
DDX39A-209	ENST00000589318	NBPF4	Q96M43	638 aa		19.86	■□□□□ 0.77
DDX39A-209	ENST00000589318	CT47B1	P0C2W7	299 aa	Predicted RBP	19.86	■□□□□ 0.77
DDX39A-209	ENST00000589318	ANP32A	P39687	249 aa	Known RBP	19.86	■□□□□ 0.77
DDX39A-209	ENST00000589318	DCTN1	Q14203	1278 aa		19.86	■□□□□ 0.77
DDX39A-209	ENST00000589318	IFT57	Q9NWB7	429 aa		19.86	■□□□□ 0.77
DDX39A-209	ENST00000589318	AXIN2	Q9Y2T1	843 aa		19.86	■□□□□ 0.77
DDX39A-209	ENST00000589318	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	19.85	■□□□□ 0.77
DDX39A-209	ENST00000589318	USHBP1	Q8N6Y0	703 aa		19.84	■□□□□ 0.77
DDX39A-209	ENST00000589318	CRBN	Q96SW2	442 aa		19.84	■□□□□ 0.77
DDX39A-209	ENST00000589318	ZC3H6	P61129	1189 aa	Known RBP	19.84	■□□□□ 0.77
DDX39A-209	ENST00000589318	IPO9	Q96P70	1041 aa	Known RBP	19.84	■□□□□ 0.77
DDX39A-209	ENST00000589318	LMO7	Q8WWI1	1683 aa		19.83	■□□□□ 0.77
DDX39A-209	ENST00000589318	GNAI1	P63096	354 aa		19.83	■□□□□ 0.77
DDX39A-209	ENST00000589318	CABLES1	Q8TDN4	633 aa		19.83	■□□□□ 0.77
DDX39A-209	ENST00000589318	CFAP44	Q96MT7	982 aa		19.83	■□□□□ 0.77

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