RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 PCNTO95613 3336 aa6.27□□□□□ -1.41
LIG3-211ENST00000588713 CROCC2H7BZ55 1655 aa6.27□□□□□ -1.41
LIG3-211ENST00000588713 KRT28Q7Z3Y7 464 aa6.27□□□□□ -1.41
LIG3-211ENST00000588713 SCUBE2Q9NQ36 999 aa6.27□□□□□ -1.41
LIG3-211ENST00000588713 PCDHB13Q9Y5F0 798 aa6.27□□□□□ -1.41
LIG3-211ENST00000588713 ARHGEF5Q12774 1597 aa6.27□□□□□ -1.41
LIG3-211ENST00000588713 TNS3Q68CZ2 1445 aa6.26□□□□□ -1.41
LIG3-211ENST00000588713 POTEMA6NI47 508 aa6.26□□□□□ -1.41
LIG3-211ENST00000588713 SEC24BO95487 1268 aa6.26□□□□□ -1.41
LIG3-211ENST00000588713 POLD1P28340 1107 aa6.26□□□□□ -1.41
LIG3-211ENST00000588713 NUBP1P53384 320 aa6.26□□□□□ -1.41
LIG3-211ENST00000588713 STRN4Q9NRL3 753 aa6.26□□□□□ -1.41
LIG3-211ENST00000588713 RRP7BPQ9NSQ0 103 aa6.26□□□□□ -1.41
LIG3-211ENST00000588713 SPATA31A1Q5TZJ5 1347 aa6.25□□□□□ -1.41
LIG3-211ENST00000588713 CCDC144AA2RUR9 1427 aa6.25□□□□□ -1.41
LIG3-211ENST00000588713 TECPR2O15040 1411 aa6.25□□□□□ -1.41
LIG3-211ENST00000588713 CCDC85CA6NKD9 419 aa6.25□□□□□ -1.41
LIG3-211ENST00000588713 TTLL13PA6NNM8 815 aa6.25□□□□□ -1.41
LIG3-211ENST00000588713 PLSCR1O15162 318 aa6.25□□□□□ -1.41
LIG3-211ENST00000588713 POTEGQ6S5H5 508 aa6.25□□□□□ -1.41
LIG3-211ENST00000588713 FAM212AQ96EL1 285 aa6.25□□□□□ -1.41
LIG3-211ENST00000588713 ABHD8Q96I13 439 aa6.25□□□□□ -1.41
LIG3-211ENST00000588713 DHX57Q6P158 1386 aaKnown RBP6.25□□□□□ -1.41
LIG3-211ENST00000588713 ROBO2Q9HCK4 1378 aa6.25□□□□□ -1.41
LIG3-211ENST00000588713 KIF15Q9NS87 1388 aa6.25□□□□□ -1.41
LIG3-211ENST00000588713 NRXN3Q9Y4C0 1643 aa6.25□□□□□ -1.41
LIG3-211ENST00000588713 LMTK2Q8IWU2 1503 aa6.25□□□□□ -1.41
LIG3-211ENST00000588713 RRBP1Q9P2E9 1410 aaKnown RBP6.25□□□□□ -1.41
LIG3-211ENST00000588713 PTF1AQ7RTS3 328 aa6.24□□□□□ -1.41
LIG3-211ENST00000588713 C16orf71Q8IYS4 520 aaPredicted RBP6.24□□□□□ -1.41
LIG3-211ENST00000588713 CFAP44Q96MT7 982 aa6.24□□□□□ -1.41
LIG3-211ENST00000588713 ABCA3Q99758 1704 aa6.24□□□□□ -1.41
LIG3-211ENST00000588713 KIAA1210Q9ULL0 1709 aa6.24□□□□□ -1.41
LIG3-211ENST00000588713 ERBINQ96RT1 1412 aa6.24□□□□□ -1.41
LIG3-211ENST00000588713 POTEFA5A3E0 1075 aa6.23□□□□□ -1.41
LIG3-211ENST00000588713 TXNRD1Q16881 649 aa6.23□□□□□ -1.41
LIG3-211ENST00000588713 RBM46Q8TBY0 533 aaKnown RBP6.23□□□□□ -1.41
LIG3-211ENST00000588713 PMFBP1Q8TBY8 1022 aa6.23□□□□□ -1.41
LIG3-211ENST00000588713 FAM163AQ96GL9 167 aaPredicted RBP6.23□□□□□ -1.41
LIG3-211ENST00000588713 NMRK2Q9NPI5 230 aa6.23□□□□□ -1.41
LIG3-211ENST00000588713 TRIM35Q9UPQ4 493 aa6.23□□□□□ -1.41
LIG3-211ENST00000588713 COL14A1Q05707 1796 aaKnown RBP6.22□□□□□ -1.41
LIG3-211ENST00000588713 PSME1Q06323 249 aa6.22□□□□□ -1.41
LIG3-211ENST00000588713 PRDM11Q9NQV5 511 aa6.22□□□□□ -1.41
LIG3-211ENST00000588713 COLQQ9Y215 455 aaPredicted RBP6.22□□□□□ -1.41
LIG3-211ENST00000588713 EEA1Q15075 1411 aa6.22□□□□□ -1.41
LIG3-211ENST00000588713 RGPD3A6NKT7 1758 aaPredicted RBP6.21□□□□□ -1.41
LIG3-211ENST00000588713 RGPD4Q7Z3J3 1758 aa6.21□□□□□ -1.41
LIG3-211ENST00000588713 ARHGEF10O15013 1369 aa6.21□□□□□ -1.41
LIG3-211ENST00000588713 FOXN1O15353 648 aa6.21□□□□□ -1.42
LIG3-211ENST00000588713 ZNF326Q5BKZ1 582 aaKnown RBP6.21□□□□□ -1.42
LIG3-211ENST00000588713 DCAF8Q5TAQ9 597 aa6.21□□□□□ -1.42
LIG3-211ENST00000588713 IFNL1Q8IU54 200 aa6.21□□□□□ -1.42
LIG3-211ENST00000588713 FBXO3Q9UK99 471 aa6.21□□□□□ -1.42
LIG3-211ENST00000588713 CEP162Q5TB80 1403 aa6.21□□□□□ -1.42
LIG3-211ENST00000588713 ACIN1Q9UKV3 1341 aaKnown RBP6.21□□□□□ -1.42
LIG3-211ENST00000588713 TULP4Q9NRJ4 1543 aa6.2□□□□□ -1.42
LIG3-211ENST00000588713 CDC42BPGQ6DT37 1551 aa6.2□□□□□ -1.42
LIG3-211ENST00000588713 OVOS2A0A0G2JMS6 1433 aa6.2□□□□□ -1.42
LIG3-211ENST00000588713 OVOS2A0A0J9YW53 1432 aa6.2□□□□□ -1.42
LIG3-211ENST00000588713 OVOS2Q6IE36 1432 aa6.2□□□□□ -1.42
LIG3-211ENST00000588713 LOC105371045A0A1W2PR82 267 aa6.2□□□□□ -1.42
LIG3-211ENST00000588713 FSTL1Q12841 308 aa6.2□□□□□ -1.42
LIG3-211ENST00000588713 CHRNA2Q15822 529 aa6.2□□□□□ -1.42
LIG3-211ENST00000588713 IER5LQ5T953 404 aa6.2□□□□□ -1.42
LIG3-211ENST00000588713 TMEM106CQ9BVX2 250 aa6.2□□□□□ -1.42
LIG3-211ENST00000588713 PRDM10Q9NQV6 1147 aa6.2□□□□□ -1.42
LIG3-211ENST00000588713 RGS19P49795 217 aa6.19□□□□□ -1.42
LIG3-211ENST00000588713 EVA1CP58658 441 aa6.19□□□□□ -1.42
LIG3-211ENST00000588713 ZNF827Q17R98 1081 aa6.19□□□□□ -1.42
LIG3-211ENST00000588713 BARGINQ6ZT62 677 aa6.19□□□□□ -1.42
LIG3-211ENST00000588713 TOPAZ1Q8N9V7 1692 aa6.19□□□□□ -1.42
LIG3-211ENST00000588713 HFM1A2PYH4 1435 aa6.18□□□□□ -1.42
LIG3-211ENST00000588713 NAIPQ13075 1403 aa6.18□□□□□ -1.42
LIG3-211ENST00000588713 PRAG1Q86YV5 1406 aa6.18□□□□□ -1.42
LIG3-211ENST00000588713 CENPBP07199 599 aaPredicted RBP6.18□□□□□ -1.42
LIG3-211ENST00000588713 TCP11L2Q8N4U5 519 aa6.18□□□□□ -1.42
LIG3-211ENST00000588713 AIDAQ96BJ3 306 aa6.18□□□□□ -1.42
LIG3-211ENST00000588713 ARHGEF28Q8N1W1 1705 aaKnown RBP6.18□□□□□ -1.42
LIG3-211ENST00000588713 SBNO1A3KN83 1393 aa6.18□□□□□ -1.42
LIG3-211ENST00000588713 KIF1AQ12756 1690 aa6.17□□□□□ -1.42
LIG3-211ENST00000588713 C11orf95C9JLR9 678 aaPredicted RBP6.17□□□□□ -1.42
LIG3-211ENST00000588713 PYGBP11216 843 aa6.17□□□□□ -1.42
LIG3-211ENST00000588713 CTCFP49711 727 aaPredicted RBP6.17□□□□□ -1.42
LIG3-211ENST00000588713 LBX1P52954 281 aa6.17□□□□□ -1.42
LIG3-211ENST00000588713 PHF8Q9UPP1 1060 aa6.17□□□□□ -1.42
LIG3-211ENST00000588713 PLCG2P16885 1265 aa6.16□□□□□ -1.42
LIG3-211ENST00000588713 LARP1Q6PKG0 1096 aaKnown RBP6.16□□□□□ -1.42
LIG3-211ENST00000588713 KIAA0232Q92628 1395 aa6.16□□□□□ -1.42
LIG3-211ENST00000588713 SSH2Q76I76 1423 aa6.16□□□□□ -1.42
LIG3-211ENST00000588713 DLL1O00548 723 aa6.15□□□□□ -1.42
LIG3-211ENST00000588713 SMC1BQ8NDV3 1235 aa6.15□□□□□ -1.42
LIG3-211ENST00000588713 SLC16A10Q8TF71 515 aa6.15□□□□□ -1.42
LIG3-211ENST00000588713 MKRN1Q9UHC7 482 aaKnown RBP6.15□□□□□ -1.42
LIG3-211ENST00000588713 LCE2DQ5TA82 110 aaPredicted RBP6.14□□□□□ -1.43
LIG3-211ENST00000588713 MSL1Q68DK7 614 aa6.14□□□□□ -1.43
LIG3-211ENST00000588713 CHIC2Q9UKJ5 165 aa6.14□□□□□ -1.43
LIG3-211ENST00000588713 ATP7BP35670 1465 aa6.14□□□□□ -1.43
LIG3-211ENST00000588713 PEAK1Q9H792 1746 aa6.13□□□□□ -1.43
LIG3-211ENST00000588713 ZC3H6P61129 1189 aaKnown RBP6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 298.2 ms