RNA–Protein interactions for RNA: ENST00000578469.1

SREBF1-218, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 3

Gene SREBF1, Length 588 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-218ENST00000578469 ARHGEF10O15013 1369 aa22.39■■□□□ 1.18
SREBF1-218ENST00000578469 TTC21AQ8NDW8 1320 aa22.39■■□□□ 1.18
SREBF1-218ENST00000578469 VPS72Q15906 364 aa22.39■■□□□ 1.17
SREBF1-218ENST00000578469 SEPT12Q8IYM1 358 aa22.39■■□□□ 1.17
SREBF1-218ENST00000578469 PMFBP1Q8TBY8 1022 aa22.39■■□□□ 1.17
SREBF1-218ENST00000578469 PLCH1Q4KWH8 1693 aa22.39■■□□□ 1.17
SREBF1-218ENST00000578469 BRWD3Q6RI45 1802 aa22.38■■□□□ 1.17
SREBF1-218ENST00000578469 SBNO1A3KN83 1393 aa22.38■■□□□ 1.17
SREBF1-218ENST00000578469 AATKQ6ZMQ8 1374 aa22.38■■□□□ 1.17
SREBF1-218ENST00000578469 LMOD2Q6P5Q4 547 aa22.37■■□□□ 1.17
SREBF1-218ENST00000578469 SUPT16HQ9Y5B9 1047 aaKnown RBP22.37■■□□□ 1.17
SREBF1-218ENST00000578469 NRKQ7Z2Y5 1582 aa22.37■■□□□ 1.17
SREBF1-218ENST00000578469 CCDC146Q8IYE0 955 aa22.36■■□□□ 1.17
SREBF1-218ENST00000578469 ABCA3Q99758 1704 aa22.35■■□□□ 1.17
SREBF1-218ENST00000578469 SSH2Q76I76 1423 aa22.34■■□□□ 1.17
SREBF1-218ENST00000578469 A0A0G2JS52 829 aa22.34■■□□□ 1.17
SREBF1-218ENST00000578469 DIAPH1O60610 1272 aaKnown RBP22.34■■□□□ 1.17
SREBF1-218ENST00000578469 PLEKHG5O94827 1062 aa22.34■■□□□ 1.17
SREBF1-218ENST00000578469 MYT1Q01538 1121 aa22.34■■□□□ 1.17
SREBF1-218ENST00000578469 KRT27Q7Z3Y8 459 aa22.34■■□□□ 1.17
SREBF1-218ENST00000578469 DEFB132Q7Z7B7 95 aa22.34■■□□□ 1.17
SREBF1-218ENST00000578469 RUNDC1Q96C34 613 aa22.34■■□□□ 1.17
SREBF1-218ENST00000578469 POLKQ9UBT6 870 aa22.34■■□□□ 1.17
SREBF1-218ENST00000578469 RGPD8O14715 1765 aaPredicted RBP22.34■■□□□ 1.17
SREBF1-218ENST00000578469 APAF1O14727 1248 aa22.33■■□□□ 1.17
SREBF1-218ENST00000578469 U2AF1L5P0DN76 240 aaPredicted RBP22.33■■□□□ 1.17
SREBF1-218ENST00000578469 U2AF1Q01081 240 aaKnown RBP eCLIP22.33■■□□□ 1.17
SREBF1-218ENST00000578469 CABLES1Q8TDN4 633 aa22.33■■□□□ 1.17
SREBF1-218ENST00000578469 COL3A1P02461 1466 aaPredicted RBP22.33■■□□□ 1.16
SREBF1-218ENST00000578469 FKBP8Q14318 412 aa22.32■■□□□ 1.16
SREBF1-218ENST00000578469 PNNQ9H307 717 aaKnown RBP22.32■■□□□ 1.16
SREBF1-218ENST00000578469 LRP5O75197 1615 aa22.31■■□□□ 1.16
SREBF1-218ENST00000578469 U2SURPO15042 1029 aaKnown RBP22.3■■□□□ 1.16
SREBF1-218ENST00000578469 PPM1GO15355 546 aaPredicted RBP22.3■■□□□ 1.16
SREBF1-218ENST00000578469 OVOS2A0A0J9YW53 1432 aa22.3■■□□□ 1.16
SREBF1-218ENST00000578469 OVOS2Q6IE36 1432 aa22.3■■□□□ 1.16
SREBF1-218ENST00000578469 ONECUT3O60422 494 aaPredicted RBP22.29■■□□□ 1.16
SREBF1-218ENST00000578469 BAG6P46379 1132 aa22.29■■□□□ 1.16
SREBF1-218ENST00000578469 USP31Q70CQ4 1352 aa22.28■■□□□ 1.16
SREBF1-218ENST00000578469 GOLGA2Q08379 1002 aa22.27■■□□□ 1.16
SREBF1-218ENST00000578469 NCBP3Q53F19 620 aaKnown RBP22.27■■□□□ 1.16
SREBF1-218ENST00000578469 MAP2P11137 1827 aaKnown RBP22.27■■□□□ 1.15
SREBF1-218ENST00000578469 EMILIN1Q9Y6C2 1016 aa22.26■■□□□ 1.15
SREBF1-218ENST00000578469 ZNF521Q96K83 1311 aa22.26■■□□□ 1.15
SREBF1-218ENST00000578469 NRAPQ86VF7 1730 aa22.25■■□□□ 1.15
SREBF1-218ENST00000578469 FAM83GA6ND36 823 aa22.24■■□□□ 1.15
SREBF1-218ENST00000578469 FBLN1P23142 703 aa22.24■■□□□ 1.15
SREBF1-218ENST00000578469 TCP11L2Q8N4U5 519 aa22.24■■□□□ 1.15
SREBF1-218ENST00000578469 CDCA7LQ96GN5 454 aa22.24■■□□□ 1.15
SREBF1-218ENST00000578469 COL14A1Q05707 1796 aaKnown RBP22.24■■□□□ 1.15
SREBF1-218ENST00000578469 FAM98CQ17RN3 349 aaKnown RBP22.23■■□□□ 1.15
SREBF1-218ENST00000578469 MAPK8IP3Q9UPT6 1336 aa22.23■■□□□ 1.15
SREBF1-218ENST00000578469 NEFMP07197 916 aa22.22■■□□□ 1.15
SREBF1-218ENST00000578469 RRS1Q15050 365 aaKnown RBP22.22■■□□□ 1.15
SREBF1-218ENST00000578469 BTG4Q9NY30 223 aa22.22■■□□□ 1.15
SREBF1-218ENST00000578469 RGPD1P0DJD0 1748 aa22.21■■□□□ 1.15
SREBF1-218ENST00000578469 TRPM3Q9HCF6 1732 aaPredicted RBP22.21■■□□□ 1.15
SREBF1-218ENST00000578469 PAK3O75914 559 aaPredicted RBP22.21■■□□□ 1.15
SREBF1-218ENST00000578469 FCHSD2O94868 740 aa22.21■■□□□ 1.15
SREBF1-218ENST00000578469 NLRP6P59044 892 aa22.21■■□□□ 1.15
SREBF1-218ENST00000578469 ERICH6BQ5W0A0 696 aa22.21■■□□□ 1.15
SREBF1-218ENST00000578469 CCDC27Q2M243 656 aa22.2■■□□□ 1.14
SREBF1-218ENST00000578469 ALS2Q96Q42 1657 aa22.2■■□□□ 1.14
SREBF1-218ENST00000578469 IL13P35225 146 aa22.19■■□□□ 1.14
SREBF1-218ENST00000578469 ABTB2Q8N961 1025 aa22.19■■□□□ 1.14
SREBF1-218ENST00000578469 RCAN3Q9UKA8 241 aa22.19■■□□□ 1.14
SREBF1-218ENST00000578469 PIK3C2AO00443 1686 aa22.18■■□□□ 1.14
SREBF1-218ENST00000578469 PSDA5PKW4 1024 aaPredicted RBP22.18■■□□□ 1.14
SREBF1-218ENST00000578469 E9PSI1 815 aa22.18■■□□□ 1.14
SREBF1-218ENST00000578469 SLFN5Q08AF3 891 aa22.18■■□□□ 1.14
SREBF1-218ENST00000578469 WWC1Q8IX03 1113 aa22.18■■□□□ 1.14
SREBF1-218ENST00000578469 RNF123Q5XPI4 1314 aa22.17■■□□□ 1.14
SREBF1-218ENST00000578469 PLEKHF1Q96S99 279 aa22.17■■□□□ 1.14
SREBF1-218ENST00000578469 NEUROD2Q15784 382 aa22.16■■□□□ 1.14
SREBF1-218ENST00000578469 WDR63Q8IWG1 891 aa22.16■■□□□ 1.14
SREBF1-218ENST00000578469 USP54Q70EL1 1684 aa22.16■■□□□ 1.14
SREBF1-218ENST00000578469 DUSP27Q5VZP5 1158 aa22.15■■□□□ 1.14
SREBF1-218ENST00000578469 RRP7AQ9Y3A4 280 aaKnown RBP22.15■■□□□ 1.14
SREBF1-218ENST00000578469 SPATA31A5Q5VU36 1347 aa22.14■■□□□ 1.14
SREBF1-218ENST00000578469 SPATA31A7Q8IWB4 1347 aa22.14■■□□□ 1.14
SREBF1-218ENST00000578469 SOX12O15370 315 aa22.14■■□□□ 1.13
SREBF1-218ENST00000578469 TRMT2AQ8IZ69 625 aaKnown RBP22.14■■□□□ 1.13
SREBF1-218ENST00000578469 PRDM11Q9NQV5 511 aa22.14■■□□□ 1.13
SREBF1-218ENST00000578469 RSPH6AQ9H0K4 717 aa22.13■■□□□ 1.13
SREBF1-218ENST00000578469 THSD7AQ9UPZ6 1657 aa22.13■■□□□ 1.13
SREBF1-218ENST00000578469 DISP2A7MBM2 1401 aa22.13■■□□□ 1.13
SREBF1-218ENST00000578469 KIF24Q5T7B8 1368 aa22.12■■□□□ 1.13
SREBF1-218ENST00000578469 MAP3K19Q56UN5 1328 aa22.12■■□□□ 1.13
SREBF1-218ENST00000578469 TMPOP42166 694 aaKnown RBP22.12■■□□□ 1.13
SREBF1-218ENST00000578469 AMPHP49418 695 aa22.12■■□□□ 1.13
SREBF1-218ENST00000578469 EN1Q05925 392 aaPredicted RBP22.12■■□□□ 1.13
SREBF1-218ENST00000578469 FLT4P35916 1363 aa22.12■■□□□ 1.13
SREBF1-218ENST00000578469 PRKAR2BP31323 418 aa22.11■■□□□ 1.13
SREBF1-218ENST00000578469 IRX6P78412 446 aaPredicted RBP22.11■■□□□ 1.13
SREBF1-218ENST00000578469 NUTM2GQ5VZR2 741 aa22.11■■□□□ 1.13
SREBF1-218ENST00000578469 CRYBG1Q9Y4K1 1723 aa22.11■■□□□ 1.13
SREBF1-218ENST00000578469 EIF4A2Q14240 407 aaKnown RBP22.1■■□□□ 1.13
SREBF1-218ENST00000578469 TNS1Q9HBL0 1735 aaKnown RBP22.09■■□□□ 1.13
SREBF1-218ENST00000578469 HMOX1P09601 288 aa22.09■■□□□ 1.13
SREBF1-218ENST00000578469 KCNH5Q8NCM2 988 aa22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms