RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 VTI1AQ96AJ9 217 aa3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 RAB3GAP2Q9H2M9 1393 aa3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 CEP170Q5SW79 1584 aa3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 NCKAP5LQ9HCH0 1330 aa3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 TARBP1Q13395 1621 aaKnown RBP3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 UBTFL1P0CB47 393 aaPredicted RBP3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 CHMP4BP1P59074 171 aa3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 TPD52L1Q16890 204 aaPredicted RBP3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 AMOTQ4VCS5 1084 aa3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 DPY19L2Q6NUT2 758 aa3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 DDX46Q7L014 1031 aaKnown RBP3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 MPHOSPH6Q99547 160 aaKnown RBP3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 NACAP1Q9BZK3 213 aa3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 BRMS1Q9HCU9 246 aa3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 H3BQV1 296 aa3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 CAVIN4Q5BKX8 364 aa3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 IL27Q8NEV9 243 aa3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 CDCA7Q9BWT1 371 aaPredicted RBP3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.56□□□□□ -1.841e-6■■□□□ 13.8
SMCHD1-203ENST00000577880 USP21Q9UK80 565 aa3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 GTF3C3Q9Y5Q9 886 aa3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 ANKRD30BQ9BXX2 1392 aa3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 LRRC9Q6ZRR7 1453 aa3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 PES1O00541 588 aaKnown RBP3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 APBA3O96018 575 aa3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 HDGFL1Q5TGJ6 251 aa3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 FBXO31Q5XUX0 539 aaPredicted RBP3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 SULT6B1Q6IMI4 303 aa3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 AIDAQ96BJ3 306 aa3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 ZNF287Q9HBT7 754 aa3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 UTP3Q9NQZ2 479 aaKnown RBP eCLIP3.56□□□□□ -1.841e-9■■■■■ 139.7
SMCHD1-203ENST00000577880 WDR7Q9Y4E6 1490 aa3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 TRIM21P19474 475 aaKnown RBP3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 CSPP1Q1MSJ5 1256 aa3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 RGS12O14924 1447 aa3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 TROQ12816 1431 aaPredicted RBP3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 PBRM1Q86U86 1689 aa3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 RIMS1Q86UR5 1692 aaKnown RBP3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 KIF14Q15058 1648 aa3.56□□□□□ -1.84
SMCHD1-203ENST00000577880 MYL6BP14649 208 aa3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 PPM1FP49593 454 aaPredicted RBP3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 TSR1Q2NL82 804 aaKnown RBP3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 DNTTIP2Q5QJE6 756 aaKnown RBP3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 TTC39AQ5SRH9 613 aa3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 ZKSCAN2Q63HK3 967 aa3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 DRC7Q8IY82 874 aa3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 SCLT1Q96NL6 688 aa3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 FEZ1Q99689 392 aa3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 CEP126Q9P2H0 1117 aa3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 FANCAO15360 1455 aa3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 BTBD11A6QL63 1104 aa3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 GNAI3P08754 354 aa3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 NBPF6Q5VWK0 638 aa3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 ZSCAN25Q6NSZ9 544 aa3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 PPP1R42Q7Z4L9 355 aa3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 NBPF5PQ86XG9 351 aaPredicted RBP3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 CLASRPQ8N2M8 674 aaKnown RBP3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 NBPF4Q96M43 638 aa3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 DNAI2Q9GZS0 605 aa3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 RAI14Q9P0K7 980 aa3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 RTCBQ9Y3I0 505 aaKnown RBP3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 HFM1A2PYH4 1435 aa3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 IFIT1P09914 478 aaKnown RBP3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 CHRNA2Q15822 529 aa3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 TRPC5Q9UL62 973 aaPredicted RBP3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 UNC13BO14795 1591 aa3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 EIF6P56537 245 aaKnown RBP3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 ODF2Q5BJF6 829 aa3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 IFNL2Q8IZJ0 200 aa3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 SETDB2Q96T68 719 aa3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 WWC3Q9ULE0 1092 aa3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 POLA1P09884 1462 aaPredicted RBP3.55□□□□□ -1.84
SMCHD1-203ENST00000577880 TCOF1Q13428 1488 aaKnown RBP3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 LDHCP07864 332 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 RUNDC1Q96C34 613 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 ACSBG1Q96GR2 724 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 CABP5Q9NP86 173 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 LRP2BPQ9P2M1 347 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 UHRF1BP1LA0JNW5 1464 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 E9PSI1 815 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 SOGA3Q5TF21 947 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 CDC5LQ99459 802 aaKnown RBP3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 SLKQ9H2G2 1235 aaPredicted RBP3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 QTRT2Q9H974 415 aaKnown RBP3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 ZNF408Q9H9D4 720 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 TRMT112Q9UI30 125 aaKnown RBP3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 TSPOAP1O95153 1857 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 TPM3P06753 285 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 ATP6V1AP38606 617 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 IDI1Q13907 227 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 TNIP1Q15025 636 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 CT47A1Q5JQC4 288 aaPredicted RBP3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 ERC1Q8IUD2 1116 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 FLAD1Q8NFF5 587 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 PPP4R2Q9NY27 417 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 POLR3DP05423 398 aaPredicted RBP3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 TCIRG1Q13488 830 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 KIF22Q14807 665 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 RRP12Q5JTH9 1297 aaKnown RBP3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 DZIP1Q86YF9 867 aaKnown RBP3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms