RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 RFX1P22670 979 aa9.5□□□□□ -0.89
VPS53-217ENST00000575100 WWC1Q8IX03 1113 aa9.5□□□□□ -0.89
VPS53-217ENST00000575100 CREBZFQ9NS37 354 aa9.5□□□□□ -0.89
VPS53-217ENST00000575100 MTMR14Q8NCE2 650 aa9.49□□□□□ -0.89
VPS53-217ENST00000575100 SOX12O15370 315 aa9.48□□□□□ -0.89
VPS53-217ENST00000575100 NWD1Q149M9 1564 aa9.48□□□□□ -0.89
VPS53-217ENST00000575100 EFCAB6Q5THR3 1501 aa9.48□□□□□ -0.89
VPS53-217ENST00000575100 LTKP29376 864 aa9.48□□□□□ -0.89
VPS53-217ENST00000575100 ZC3H6P61129 1189 aaKnown RBP9.48□□□□□ -0.89
VPS53-217ENST00000575100 EFCAB3Q8N7B9 438 aa9.48□□□□□ -0.89
VPS53-217ENST00000575100 MPHOSPH9Q99550 1183 aa9.48□□□□□ -0.89
VPS53-217ENST00000575100 NUP155O75694 1391 aa9.48□□□□□ -0.89
VPS53-217ENST00000575100 TET3O43151 1660 aa9.47□□□□□ -0.89
VPS53-217ENST00000575100 RFC5P40937 340 aa9.47□□□□□ -0.89
VPS53-217ENST00000575100 PSEN1P49768 467 aa9.47□□□□□ -0.89
VPS53-217ENST00000575100 NOL8Q76FK4 1167 aaKnown RBP9.47□□□□□ -0.89
VPS53-217ENST00000575100 PRDM16Q9HAZ2 1276 aa9.47□□□□□ -0.89
VPS53-217ENST00000575100 POLR3EQ9NVU0 708 aa9.47□□□□□ -0.89
VPS53-217ENST00000575100 TMEM2Q9UHN6 1383 aa9.47□□□□□ -0.89
VPS53-217ENST00000575100 UNC13BO14795 1591 aa9.47□□□□□ -0.89
VPS53-217ENST00000575100 EMILIN3Q9NT22 766 aa9.46□□□□□ -0.89
VPS53-217ENST00000575100 ADGRB3O60242 1522 aa9.46□□□□□ -0.89
VPS53-217ENST00000575100 FAM135BQ49AJ0 1406 aa9.46□□□□□ -0.89
VPS53-217ENST00000575100 NOM1Q5C9Z4 860 aaKnown RBP9.46□□□□□ -0.9
VPS53-217ENST00000575100 GIMAP6Q6P9H5 292 aa9.45□□□□□ -0.9
VPS53-217ENST00000575100 ADAMTS19Q8TE59 1207 aa9.45□□□□□ -0.9
VPS53-217ENST00000575100 PCDHB8Q9UN66 801 aa9.45□□□□□ -0.9
VPS53-217ENST00000575100 PCDHB13Q9Y5F0 798 aa9.45□□□□□ -0.9
VPS53-217ENST00000575100 NOS1P29475 1434 aa9.45□□□□□ -0.9
VPS53-217ENST00000575100 NKTRP30414 1462 aaKnown RBP9.45□□□□□ -0.9
VPS53-217ENST00000575100 KANK1Q14678 1352 aa9.45□□□□□ -0.9
VPS53-217ENST00000575100 ROBO1Q9Y6N7 1651 aa9.44□□□□□ -0.9
VPS53-217ENST00000575100 SIN3AQ96ST3 1273 aa9.44□□□□□ -0.9
VPS53-217ENST00000575100 EID1Q9Y6B2 187 aa9.44□□□□□ -0.9
VPS53-217ENST00000575100 MARCH6O60337 910 aa9.44□□□□□ -0.9
VPS53-217ENST00000575100 ABL2P42684 1182 aa9.44□□□□□ -0.9
VPS53-217ENST00000575100 LOC102724159A0A0B4J2E5 919 aa9.43□□□□□ -0.9
VPS53-217ENST00000575100 FCHSD2O94868 740 aa9.43□□□□□ -0.9
VPS53-217ENST00000575100 PWP2Q15269 919 aaKnown RBP9.43□□□□□ -0.9
VPS53-217ENST00000575100 RIPOR2Q9Y4F9 1068 aa9.43□□□□□ -0.9
VPS53-217ENST00000575100 IQGAP3Q86VI3 1631 aa9.43□□□□□ -0.9
VPS53-217ENST00000575100 CHD2O14647 1828 aaKnown RBP9.43□□□□□ -0.9
VPS53-217ENST00000575100 MYO5BQ9ULV0 1848 aa9.43□□□□□ -0.9
VPS53-217ENST00000575100 SF3A1Q15459 793 aaKnown RBP9.43□□□□□ -0.9
VPS53-217ENST00000575100 BCL2L13Q9BXK5 485 aa9.43□□□□□ -0.9
VPS53-217ENST00000575100 RGS17Q9UGC6 210 aaPredicted RBP9.43□□□□□ -0.9
VPS53-217ENST00000575100 RPRD2Q5VT52 1461 aaKnown RBP9.42□□□□□ -0.9
VPS53-217ENST00000575100 KCNA6P17658 529 aa9.42□□□□□ -0.9
VPS53-217ENST00000575100 TMEM259Q4ZIN3 620 aa9.42□□□□□ -0.9
VPS53-217ENST00000575100 PPP1R15BQ5SWA1 713 aa9.42□□□□□ -0.9
VPS53-217ENST00000575100 TMEM94Q12767 1356 aa9.42□□□□□ -0.9
VPS53-217ENST00000575100 VAMP1P23763 118 aa9.41□□□□□ -0.9
VPS53-217ENST00000575100 ZNF526Q8TF50 670 aaPredicted RBP9.41□□□□□ -0.9
VPS53-217ENST00000575100 PPP1R12CQ9BZL4 782 aa9.41□□□□□ -0.9
VPS53-217ENST00000575100 CLCN1P35523 988 aa9.41□□□□□ -0.9
VPS53-217ENST00000575100 IDI1Q13907 227 aa9.41□□□□□ -0.9
VPS53-217ENST00000575100 HDGFL1Q5TGJ6 251 aa9.41□□□□□ -0.9
VPS53-217ENST00000575100 MYSM1Q5VVJ2 828 aa9.41□□□□□ -0.9
VPS53-217ENST00000575100 ZNF662Q6ZS27 426 aa9.41□□□□□ -0.9
VPS53-217ENST00000575100 BEGAINQ9BUH8 593 aa9.41□□□□□ -0.9
VPS53-217ENST00000575100 PPP1R1BQ9UD71 204 aaPredicted RBP9.41□□□□□ -0.9
VPS53-217ENST00000575100 ANKRD30BQ9BXX2 1392 aa9.4□□□□□ -0.9
VPS53-217ENST00000575100 PHLPP1O60346 1717 aa9.4□□□□□ -0.9
VPS53-217ENST00000575100 NAALADL2Q58DX5 795 aa9.4□□□□□ -0.9
VPS53-217ENST00000575100 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.4□□□□□ -0.9
VPS53-217ENST00000575100 CLSPNQ9HAW4 1339 aa9.4□□□□□ -0.9
VPS53-217ENST00000575100 ZFYVE9O95405 1425 aa9.4□□□□□ -0.91
VPS53-217ENST00000575100 TMEM131LA2VDJ0 1609 aa9.4□□□□□ -0.91
VPS53-217ENST00000575100 ATG7O95352 703 aa9.39□□□□□ -0.91
VPS53-217ENST00000575100 NEUROD1Q13562 356 aa9.39□□□□□ -0.91
VPS53-217ENST00000575100 GPCPD1Q9NPB8 672 aa9.39□□□□□ -0.91
VPS53-217ENST00000575100 TBC1D2BQ9UPU7 963 aa9.39□□□□□ -0.91
VPS53-217ENST00000575100 SSTR3P32745 418 aaPredicted RBP9.39□□□□□ -0.91
VPS53-217ENST00000575100 GIPC2Q8TF65 315 aa9.39□□□□□ -0.91
VPS53-217ENST00000575100 MS4A4AQ96JQ5 239 aa9.39□□□□□ -0.91
VPS53-217ENST00000575100 E9PCH4 1651 aa9.38□□□□□ -0.91
VPS53-217ENST00000575100 CLK2P49760 499 aaKnown RBP9.38□□□□□ -0.91
VPS53-217ENST00000575100 SLC52A1Q9NWF4 448 aa9.38□□□□□ -0.91
VPS53-217ENST00000575100 COL16A1Q07092 1604 aaPredicted RBP9.38□□□□□ -0.91
VPS53-217ENST00000575100 PLEKHG1Q9ULL1 1385 aa9.37□□□□□ -0.91
VPS53-217ENST00000575100 OSBPP22059 807 aa9.37□□□□□ -0.91
VPS53-217ENST00000575100 PPP2R2DQ66LE6 453 aa9.37□□□□□ -0.91
VPS53-217ENST00000575100 B4GALNT3Q6L9W6 998 aa9.37□□□□□ -0.91
VPS53-217ENST00000575100 PPME1Q9Y570 386 aa9.37□□□□□ -0.91
VPS53-217ENST00000575100 DIP2AQ14689 1571 aa9.37□□□□□ -0.91
VPS53-217ENST00000575100 NCOA3Q9Y6Q9 1424 aa9.37□□□□□ -0.91
VPS53-217ENST00000575100 MSH6P52701 1360 aa9.36□□□□□ -0.91
VPS53-217ENST00000575100 GRXCR2A6NFK2 248 aa9.36□□□□□ -0.91
VPS53-217ENST00000575100 IRX6P78412 446 aaPredicted RBP9.36□□□□□ -0.91
VPS53-217ENST00000575100 SLC26A8Q96RN1 970 aa9.36□□□□□ -0.91
VPS53-217ENST00000575100 TBC1D2Q9BYX2 928 aa9.36□□□□□ -0.91
VPS53-217ENST00000575100 MICAL1Q8TDZ2 1067 aa9.35□□□□□ -0.91
VPS53-217ENST00000575100 CABP2Q9NPB3 220 aa9.35□□□□□ -0.91
VPS53-217ENST00000575100 RIMS2Q9UQ26 1411 aa9.35□□□□□ -0.91
VPS53-217ENST00000575100 SHPRHQ149N8 1683 aa9.35□□□□□ -0.91
VPS53-217ENST00000575100 AHDC1Q5TGY3 1603 aaPredicted RBP9.35□□□□□ -0.91
VPS53-217ENST00000575100 PALM3A6NDB9 673 aaPredicted RBP9.35□□□□□ -0.91
VPS53-217ENST00000575100 POTEAQ6S8J7 498 aa9.35□□□□□ -0.91
VPS53-217ENST00000575100 SETD1AO15047 1707 aaKnown RBP9.35□□□□□ -0.91
VPS53-217ENST00000575100 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms