RNA–Protein interactions for RNA: ENST00000573955.1

USP43-204, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 2,641 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-204ENST00000573955 TNNQ9UQP3 1299 aa20.53■□□□□ 0.88
USP43-204ENST00000573955 RGPD8O14715 1765 aaPredicted RBP20.52■□□□□ 0.88
USP43-204ENST00000573955 DIP2AQ14689 1571 aa20.52■□□□□ 0.88
USP43-204ENST00000573955 AATKQ6ZMQ8 1374 aa20.52■□□□□ 0.88
USP43-204ENST00000573955 KDM4FA0A1W2PPD8 638 aa20.52■□□□□ 0.87
USP43-204ENST00000573955 NUTM2GQ5VZR2 741 aa20.52■□□□□ 0.87
USP43-204ENST00000573955 COG6Q9Y2V7 657 aa20.52■□□□□ 0.87
USP43-204ENST00000573955 EXOSC9Q06265 439 aaKnown RBP20.51■□□□□ 0.87
USP43-204ENST00000573955 LAS1LQ9Y4W2 734 aaKnown RBP20.51■□□□□ 0.87
USP43-204ENST00000573955 CDK12Q9NYV4 1490 aaPredicted RBP20.51■□□□□ 0.87
USP43-204ENST00000573955 THUMPD2Q9BTF0 503 aaKnown RBP20.51■□□□□ 0.87
USP43-204ENST00000573955 CLUAP1Q96AJ1 413 aa20.5■□□□□ 0.87
USP43-204ENST00000573955 ZNF142P52746 1687 aaPredicted RBP20.49■□□□□ 0.87
USP43-204ENST00000573955 NRKQ7Z2Y5 1582 aa20.49■□□□□ 0.87
USP43-204ENST00000573955 XRN1Q8IZH2 1706 aaKnown RBP20.49■□□□□ 0.87
USP43-204ENST00000573955 NPHP4O75161 1426 aaPredicted RBP20.48■□□□□ 0.87
USP43-204ENST00000573955 NCBP3Q53F19 620 aaKnown RBP20.48■□□□□ 0.87
USP43-204ENST00000573955 HSP90AB2PQ58FF8 381 aa20.47■□□□□ 0.87
USP43-204ENST00000573955 OVOS2A0A0J9YW53 1432 aa20.46■□□□□ 0.87
USP43-204ENST00000573955 OVOS2Q6IE36 1432 aa20.46■□□□□ 0.87
USP43-204ENST00000573955 AEBP1Q8IUX7 1158 aa20.46■□□□□ 0.87
USP43-204ENST00000573955 RLBP1P12271 317 aa20.45■□□□□ 0.86
USP43-204ENST00000573955 EIF4A2Q14240 407 aaKnown RBP20.45■□□□□ 0.86
USP43-204ENST00000573955 NFE2L2Q16236 605 aa20.45■□□□□ 0.86
USP43-204ENST00000573955 XPCQ01831 940 aaPredicted RBP20.45■□□□□ 0.86
USP43-204ENST00000573955 PDE3AQ14432 1141 aa20.45■□□□□ 0.86
USP43-204ENST00000573955 A0A0U1RQG5 324 aaPredicted RBP20.44■□□□□ 0.86
USP43-204ENST00000573955 KDM2BQ8NHM5 1336 aa20.44■□□□□ 0.86
USP43-204ENST00000573955 SMC4Q9NTJ3 1288 aa20.44■□□□□ 0.86
USP43-204ENST00000573955 SULT6B1Q6IMI4 303 aa20.43■□□□□ 0.86
USP43-204ENST00000573955 SSH2Q76I76 1423 aa20.43■□□□□ 0.86
USP43-204ENST00000573955 FAM83GA6ND36 823 aa20.42■□□□□ 0.86
USP43-204ENST00000573955 CENPQQ7L2Z9 268 aaPredicted RBP20.42■□□□□ 0.86
USP43-204ENST00000573955 PIK3R4Q99570 1358 aa20.42■□□□□ 0.86
USP43-204ENST00000573955 TCERG1O14776 1098 aaKnown RBP20.41■□□□□ 0.86
USP43-204ENST00000573955 NLRP6P59044 892 aa20.41■□□□□ 0.86
USP43-204ENST00000573955 DCTN1Q14203 1278 aa20.41■□□□□ 0.86
USP43-204ENST00000573955 IL16Q14005 1332 aa20.41■□□□□ 0.86
USP43-204ENST00000573955 MAP3K19Q56UN5 1328 aa20.41■□□□□ 0.86
USP43-204ENST00000573955 TTC21AQ8NDW8 1320 aa20.41■□□□□ 0.86
USP43-204ENST00000573955 SSH1Q8WYL5 1049 aa20.4■□□□□ 0.86
USP43-204ENST00000573955 CHD2O14647 1828 aaKnown RBP20.4■□□□□ 0.86
USP43-204ENST00000573955 PROSER2Q86WR7 435 aaPredicted RBP20.4■□□□□ 0.86
USP43-204ENST00000573955 FAM43AQ8N2R8 423 aa20.4■□□□□ 0.86
USP43-204ENST00000573955 PDE4CQ08493 712 aa20.4■□□□□ 0.86
USP43-204ENST00000573955 FGD1P98174 961 aa20.39■□□□□ 0.85
USP43-204ENST00000573955 ESCO1Q5FWF5 840 aa20.39■□□□□ 0.85
USP43-204ENST00000573955 PEAK1Q9H792 1746 aa20.39■□□□□ 0.85
USP43-204ENST00000573955 IGHDP01880 384 aa20.38■□□□□ 0.85
USP43-204ENST00000573955 ORAI2Q96SN7 254 aa20.38■□□□□ 0.85
USP43-204ENST00000573955 NALCNQ8IZF0 1738 aa20.38■□□□□ 0.85
USP43-204ENST00000573955 ELL2O00472 640 aaPredicted RBP20.38■□□□□ 0.85
USP43-204ENST00000573955 USP31Q70CQ4 1352 aa20.38■□□□□ 0.85
USP43-204ENST00000573955 AMPHP49418 695 aa20.37■□□□□ 0.85
USP43-204ENST00000573955 FTSJ3Q8IY81 847 aaKnown RBP20.37■□□□□ 0.85
USP43-204ENST00000573955 ABTB2Q8N961 1025 aa20.37■□□□□ 0.85
USP43-204ENST00000573955 ZKSCAN2Q63HK3 967 aa20.37■□□□□ 0.85
USP43-204ENST00000573955 RGS3P49796 1198 aa20.36■□□□□ 0.85
USP43-204ENST00000573955 RBM10P98175 930 aaKnown RBP20.36■□□□□ 0.85
USP43-204ENST00000573955 ANKARQ7Z5J8 1434 aa20.36■□□□□ 0.85
USP43-204ENST00000573955 FMN2Q9NZ56 1722 aa20.36■□□□□ 0.85
USP43-204ENST00000573955 GSE1Q14687 1217 aa20.35■□□□□ 0.85
USP43-204ENST00000573955 PHF8Q9UPP1 1060 aa20.35■□□□□ 0.85
USP43-204ENST00000573955 PIK3C2AO00443 1686 aa20.35■□□□□ 0.85
USP43-204ENST00000573955 CT47B1P0C2W7 299 aaPredicted RBP20.35■□□□□ 0.85
USP43-204ENST00000573955 PDE4AP27815 886 aa20.35■□□□□ 0.85
USP43-204ENST00000573955 DDX17Q92841 729 aaKnown RBP20.35■□□□□ 0.85
USP43-204ENST00000573955 NOB1Q9ULX3 412 aaKnown RBP20.35■□□□□ 0.85
USP43-204ENST00000573955 AAMPQ13685 434 aa20.34■□□□□ 0.85
USP43-204ENST00000573955 TRIM27P14373 513 aa20.34■□□□□ 0.85
USP43-204ENST00000573955 DZIP1LQ8IYY4 767 aaKnown RBP20.34■□□□□ 0.85
USP43-204ENST00000573955 MBIPQ9NS73 344 aa20.34■□□□□ 0.85
USP43-204ENST00000573955 FOXO3O43524 673 aa20.33■□□□□ 0.85
USP43-204ENST00000573955 NPM2Q86SE8 214 aaKnown RBP20.33■□□□□ 0.85
USP43-204ENST00000573955 TSPYL6Q8N831 410 aa20.33■□□□□ 0.85
USP43-204ENST00000573955 DLG5Q8TDM6 1919 aa20.33■□□□□ 0.84
USP43-204ENST00000573955 ZBTB7CA1YPR0 619 aa20.32■□□□□ 0.84
USP43-204ENST00000573955 LMOD2Q6P5Q4 547 aa20.32■□□□□ 0.84
USP43-204ENST00000573955 GNAI1P63096 354 aa20.31■□□□□ 0.84
USP43-204ENST00000573955 MCM10Q7L590 875 aa20.31■□□□□ 0.84
USP43-204ENST00000573955 LTV1Q96GA3 475 aaPredicted RBP20.31■□□□□ 0.84
USP43-204ENST00000573955 PCDHB15Q9Y5E8 787 aa20.31■□□□□ 0.84
USP43-204ENST00000573955 FLT4P35916 1363 aa20.31■□□□□ 0.84
USP43-204ENST00000573955 CALD1Q05682 793 aaKnown RBP20.31■□□□□ 0.84
USP43-204ENST00000573955 LMOD3Q0VAK6 560 aa20.31■□□□□ 0.84
USP43-204ENST00000573955 HSP90AA2PQ14568 343 aaPredicted RBP20.31■□□□□ 0.84
USP43-204ENST00000573955 MVPQ14764 893 aaKnown RBP20.31■□□□□ 0.84
USP43-204ENST00000573955 IFT57Q9NWB7 429 aa20.3■□□□□ 0.84
USP43-204ENST00000573955 SBNO1A3KN83 1393 aa20.3■□□□□ 0.84
USP43-204ENST00000573955 MS4A1P11836 297 aa20.3■□□□□ 0.84
USP43-204ENST00000573955 ITPRIPQ8IWB1 547 aa20.3■□□□□ 0.84
USP43-204ENST00000573955 ATF7IPQ6VMQ6 1270 aa20.29■□□□□ 0.84
USP43-204ENST00000573955 BACH2Q9BYV9 841 aa20.29■□□□□ 0.84
USP43-204ENST00000573955 PSME1Q06323 249 aa20.28■□□□□ 0.84
USP43-204ENST00000573955 EYA1Q99502 592 aa20.28■□□□□ 0.84
USP43-204ENST00000573955 ADGRL3Q9HAR2 1447 aa20.28■□□□□ 0.84
USP43-204ENST00000573955 CFAP44Q96MT7 982 aa20.27■□□□□ 0.84
USP43-204ENST00000573955 RRP9O43818 475 aaKnown RBP20.27■□□□□ 0.84
USP43-204ENST00000573955 VAMP4O75379 141 aa20.27■□□□□ 0.84
USP43-204ENST00000573955 ZNF853P0CG23 659 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms