RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 KAT6BQ8WYB5 2073 aa12.72□□□□□ -0.37
SMG6-213ENST00000573166 KIF16BQ96L93 1317 aa12.72□□□□□ -0.37
SMG6-213ENST00000573166 E9PCH4 1651 aa12.71□□□□□ -0.37
SMG6-213ENST00000573166 BTBD11A6QL63 1104 aa12.71□□□□□ -0.37
SMG6-213ENST00000573166 MPRIPQ6WCQ1 1025 aa12.71□□□□□ -0.37
SMG6-213ENST00000573166 CAMSAP1Q5T5Y3 1602 aa12.71□□□□□ -0.37
SMG6-213ENST00000573166 PPRC1Q5VV67 1664 aaKnown RBP12.71□□□□□ -0.37
SMG6-213ENST00000573166 EDC4Q6P2E9 1401 aaKnown RBP12.71□□□□□ -0.37
SMG6-213ENST00000573166 SF3B2Q13435 895 aaKnown RBP12.71□□□□□ -0.37
SMG6-213ENST00000573166 CCDC30Q5VVM6 783 aa12.71□□□□□ -0.37
SMG6-213ENST00000573166 CASC1Q6TDU7 716 aa12.71□□□□□ -0.38
SMG6-213ENST00000573166 RIC3Q7Z5B4 369 aa12.71□□□□□ -0.38
SMG6-213ENST00000573166 DZIP1LQ8IYY4 767 aaKnown RBP12.71□□□□□ -0.38
SMG6-213ENST00000573166 EIF4A2Q14240 407 aaKnown RBP12.7□□□□□ -0.38
SMG6-213ENST00000573166 TMX4Q9H1E5 349 aaPredicted RBP12.7□□□□□ -0.38
SMG6-213ENST00000573166 MIS18AQ9NYP9 233 aa12.7□□□□□ -0.38
SMG6-213ENST00000573166 FLT4P35916 1363 aa12.7□□□□□ -0.38
SMG6-213ENST00000573166 PTCD1O75127 700 aaKnown RBP12.7□□□□□ -0.38
SMG6-213ENST00000573166 ADGRB3O60242 1522 aa12.7□□□□□ -0.38
SMG6-213ENST00000573166 ERICH6BQ5W0A0 696 aa12.69□□□□□ -0.38
SMG6-213ENST00000573166 AEBP1Q8IUX7 1158 aa12.69□□□□□ -0.38
SMG6-213ENST00000573166 PARD3Q8TEW0 1356 aa12.68□□□□□ -0.38
SMG6-213ENST00000573166 TMOD3Q9NYL9 352 aa12.68□□□□□ -0.38
SMG6-213ENST00000573166 GORABQ5T7V8 394 aa12.68□□□□□ -0.38
SMG6-213ENST00000573166 IFNL2Q8IZJ0 200 aa12.68□□□□□ -0.38
SMG6-213ENST00000573166 IP6K1Q92551 441 aa12.68□□□□□ -0.38
SMG6-213ENST00000573166 BTG4Q9NY30 223 aa12.68□□□□□ -0.38
SMG6-213ENST00000573166 FAM135BQ49AJ0 1406 aa12.68□□□□□ -0.38
SMG6-213ENST00000573166 SLC4A2P04920 1241 aa12.67□□□□□ -0.38
SMG6-213ENST00000573166 HOXC9P31274 260 aa12.67□□□□□ -0.38
SMG6-213ENST00000573166 CRBNQ96SW2 442 aa12.67□□□□□ -0.38
SMG6-213ENST00000573166 EXOC6Q8TAG9 804 aa12.67□□□□□ -0.38
SMG6-213ENST00000573166 DDX19BQ9UMR2 479 aa12.67□□□□□ -0.38
SMG6-213ENST00000573166 TAF7Q15545 349 aaPredicted RBP12.67□□□□□ -0.38
SMG6-213ENST00000573166 ARHGEF10O15013 1369 aa12.67□□□□□ -0.38
SMG6-213ENST00000573166 PRR36Q9H6K5 1346 aa12.66□□□□□ -0.38
SMG6-213ENST00000573166 SETD1BQ9UPS6 1966 aaKnown RBP12.66□□□□□ -0.38
SMG6-213ENST00000573166 EYA1Q99502 592 aa12.66□□□□□ -0.38
SMG6-213ENST00000573166 KDM4FA0A1W2PPD8 638 aa12.65□□□□□ -0.38
SMG6-213ENST00000573166 ZCRB1Q8TBF4 217 aaKnown RBP12.65□□□□□ -0.38
SMG6-213ENST00000573166 MYL6BP14649 208 aa12.65□□□□□ -0.38
SMG6-213ENST00000573166 PANK1Q8TE04 598 aa12.65□□□□□ -0.38
SMG6-213ENST00000573166 FRMPD1Q5SYB0 1578 aa12.65□□□□□ -0.38
SMG6-213ENST00000573166 FAM83GA6ND36 823 aa12.64□□□□□ -0.39
SMG6-213ENST00000573166 RIMS1Q86UR5 1692 aaKnown RBP12.64□□□□□ -0.39
SMG6-213ENST00000573166 SYNMO15061 1565 aa12.64□□□□□ -0.39
SMG6-213ENST00000573166 FAM177BA6PVY3 158 aa12.64□□□□□ -0.39
SMG6-213ENST00000573166 ALKQ9UM73 1620 aa12.63□□□□□ -0.39
SMG6-213ENST00000573166 POLR3AO14802 1390 aaPredicted RBP12.63□□□□□ -0.39
SMG6-213ENST00000573166 BCAR3O75815 825 aa12.63□□□□□ -0.39
SMG6-213ENST00000573166 IL2RBP14784 551 aa12.63□□□□□ -0.39
SMG6-213ENST00000573166 KCNJ4P48050 445 aa12.63□□□□□ -0.39
SMG6-213ENST00000573166 SLFN5Q08AF3 891 aa12.63□□□□□ -0.39
SMG6-213ENST00000573166 DDB1Q16531 1140 aa12.63□□□□□ -0.39
SMG6-213ENST00000573166 KIF6Q6ZMV9 814 aa12.63□□□□□ -0.39
SMG6-213ENST00000573166 NPC1L1Q9UHC9 1359 aa12.63□□□□□ -0.39
SMG6-213ENST00000573166 RICTORQ6R327 1708 aa12.62□□□□□ -0.39
SMG6-213ENST00000573166 DUSP27Q5VZP5 1158 aa12.62□□□□□ -0.39
SMG6-213ENST00000573166 IFT57Q9NWB7 429 aa12.62□□□□□ -0.39
SMG6-213ENST00000573166 ZC3H13Q5T200 1668 aaKnown RBP12.61□□□□□ -0.39
SMG6-213ENST00000573166 CT47B1P0C2W7 299 aaPredicted RBP12.61□□□□□ -0.39
SMG6-213ENST00000573166 SBNO1A3KN83 1393 aa12.61□□□□□ -0.39
SMG6-213ENST00000573166 G3V3G9 751 aa12.61□□□□□ -0.39
SMG6-213ENST00000573166 STARD3NLO95772 234 aa12.61□□□□□ -0.39
SMG6-213ENST00000573166 DCAF8Q5TAQ9 597 aa12.61□□□□□ -0.39
SMG6-213ENST00000573166 EIF5BO60841 1220 aaKnown RBP12.61□□□□□ -0.39
SMG6-213ENST00000573166 FRAT2O75474 233 aaPredicted RBP12.61□□□□□ -0.39
SMG6-213ENST00000573166 BRINP3Q76B58 766 aa12.61□□□□□ -0.39
SMG6-213ENST00000573166 UBTFL1P0CB47 393 aaPredicted RBP12.6□□□□□ -0.39
SMG6-213ENST00000573166 NOB1Q9ULX3 412 aaKnown RBP12.6□□□□□ -0.39
SMG6-213ENST00000573166 KLHL34Q8N239 644 aa12.6□□□□□ -0.39
SMG6-213ENST00000573166 ZNF428Q96B54 188 aa12.6□□□□□ -0.39
SMG6-213ENST00000573166 GPATCH3Q96I76 525 aa12.6□□□□□ -0.39
SMG6-213ENST00000573166 PIK3C2BO00750 1634 aa12.59□□□□□ -0.39
SMG6-213ENST00000573166 MTHFSDQ2M296 383 aaKnown RBP12.59□□□□□ -0.39
SMG6-213ENST00000573166 CFAP44Q96MT7 982 aa12.59□□□□□ -0.39
SMG6-213ENST00000573166 ANKRD45Q5TZF3 282 aa12.59□□□□□ -0.39
SMG6-213ENST00000573166 PHACTR3Q96KR7 559 aa12.59□□□□□ -0.39
SMG6-213ENST00000573166 ACSBG1Q96GR2 724 aa12.58□□□□□ -0.39
SMG6-213ENST00000573166 KDM5AP29375 1690 aaKnown RBP12.58□□□□□ -0.4
SMG6-213ENST00000573166 FMNL2Q96PY5 1086 aa12.58□□□□□ -0.4
SMG6-213ENST00000573166 MADDQ8WXG6 1647 aa12.58□□□□□ -0.4
SMG6-213ENST00000573166 ADGRL3Q9HAR2 1447 aa12.58□□□□□ -0.4
SMG6-213ENST00000573166 TRIM6-TRIM34B2RNG4 842 aa12.58□□□□□ -0.4
SMG6-213ENST00000573166 IL13P35225 146 aa12.58□□□□□ -0.4
SMG6-213ENST00000573166 AKAP4Q5JQC9 854 aa12.58□□□□□ -0.4
SMG6-213ENST00000573166 FANCIQ9NVI1 1328 aa12.57□□□□□ -0.4
SMG6-213ENST00000573166 GNAI3P08754 354 aa12.57□□□□□ -0.4
SMG6-213ENST00000573166 USP6P35125 1406 aa12.57□□□□□ -0.4
SMG6-213ENST00000573166 PREX1Q8TCU6 1659 aa12.57□□□□□ -0.4
SMG6-213ENST00000573166 ATF7IPQ6VMQ6 1270 aa12.56□□□□□ -0.4
SMG6-213ENST00000573166 CEP170BQ9Y4F5 1589 aaPredicted RBP12.56□□□□□ -0.4
SMG6-213ENST00000573166 NBPF6Q5VWK0 638 aa12.56□□□□□ -0.4
SMG6-213ENST00000573166 NBPF4Q96M43 638 aa12.56□□□□□ -0.4
SMG6-213ENST00000573166 SRCIN1Q9C0H9 1055 aa12.56□□□□□ -0.4
SMG6-213ENST00000573166 SPATA31D1Q6ZQQ2 1576 aa12.56□□□□□ -0.4
SMG6-213ENST00000573166 ADAMTS13Q76LX8 1427 aa12.56□□□□□ -0.4
SMG6-213ENST00000573166 G3BP1Q13283 466 aaKnown RBP eCLIP12.56□□□□□ -0.4
SMG6-213ENST00000573166 USP21Q9UK80 565 aa12.56□□□□□ -0.4
SMG6-213ENST00000573166 SLC39A6Q13433 755 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms