RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 MYOM2P54296 1465 aa10.81□□□□□ -0.68
NUP88-205ENST00000572809 NRXN1Q9ULB1 1477 aa10.81□□□□□ -0.68
NUP88-205ENST00000572809 COL16A1Q07092 1604 aaPredicted RBP10.8□□□□□ -0.68
NUP88-205ENST00000572809 ASXL1Q8IXJ9 1541 aa10.8□□□□□ -0.68
NUP88-205ENST00000572809 TECPR2O15040 1411 aa10.8□□□□□ -0.68
NUP88-205ENST00000572809 PLEKHH1Q9ULM0 1364 aa10.79□□□□□ -0.68
NUP88-205ENST00000572809 NUTM2FA1L443 756 aa10.79□□□□□ -0.68
NUP88-205ENST00000572809 NUTM2BA6NNL0 878 aaPredicted RBP10.79□□□□□ -0.68
NUP88-205ENST00000572809 NUTM2EB1AL46 878 aaPredicted RBP10.79□□□□□ -0.68
NUP88-205ENST00000572809 NLRP6P59044 892 aa10.79□□□□□ -0.68
NUP88-205ENST00000572809 MEX3CQ5U5Q3 659 aaKnown RBP10.79□□□□□ -0.68
NUP88-205ENST00000572809 NUTM2AQ8IVF1 878 aaPredicted RBP10.79□□□□□ -0.68
NUP88-205ENST00000572809 NUDT7P0C024 238 aa10.78□□□□□ -0.68
NUP88-205ENST00000572809 PRAM1Q96QH2 718 aa10.78□□□□□ -0.68
NUP88-205ENST00000572809 POGKQ9P215 609 aa10.78□□□□□ -0.68
NUP88-205ENST00000572809 FOXO3O43524 673 aa10.77□□□□□ -0.69
NUP88-205ENST00000572809 SAFB2Q14151 953 aaKnown RBP eCLIP10.77□□□□□ -0.69
NUP88-205ENST00000572809 POTEAQ6S8J7 498 aa10.77□□□□□ -0.69
NUP88-205ENST00000572809 RYDENQ9NUL5 291 aaKnown RBP10.77□□□□□ -0.69
NUP88-205ENST00000572809 TRAK1Q9UPV9 953 aa10.77□□□□□ -0.69
NUP88-205ENST00000572809 SOS2Q07890 1332 aaPredicted RBP10.77□□□□□ -0.69
NUP88-205ENST00000572809 FBXO22Q8NEZ5 403 aa10.76□□□□□ -0.69
NUP88-205ENST00000572809 AXIN2Q9Y2T1 843 aa10.76□□□□□ -0.69
NUP88-205ENST00000572809 STK24Q9Y6E0 443 aa10.76□□□□□ -0.69
NUP88-205ENST00000572809 NHSL1Q5SYE7 1610 aa10.76□□□□□ -0.69
NUP88-205ENST00000572809 POTEEQ6S8J3 1075 aa10.75□□□□□ -0.69
NUP88-205ENST00000572809 LAMC1P11047 1609 aa10.75□□□□□ -0.69
NUP88-205ENST00000572809 NPHP3Q7Z494 1330 aa10.75□□□□□ -0.69
NUP88-205ENST00000572809 KNDC1Q76NI1 1749 aa10.75□□□□□ -0.69
NUP88-205ENST00000572809 CDC42BPGQ6DT37 1551 aa10.74□□□□□ -0.69
NUP88-205ENST00000572809 SHPRHQ149N8 1683 aa10.74□□□□□ -0.69
NUP88-205ENST00000572809 GTPBP6O43824 516 aaPredicted RBP10.74□□□□□ -0.69
NUP88-205ENST00000572809 PBX2P40425 430 aa10.74□□□□□ -0.69
NUP88-205ENST00000572809 NKX1-1Q15270 411 aaPredicted RBP10.74□□□□□ -0.69
NUP88-205ENST00000572809 ZNF772Q68DY9 489 aaPredicted RBP10.74□□□□□ -0.69
NUP88-205ENST00000572809 BCL11BQ9C0K0 894 aaPredicted RBP10.74□□□□□ -0.69
NUP88-205ENST00000572809 PLA2G2EQ9NZK7 142 aa10.74□□□□□ -0.69
NUP88-205ENST00000572809 LRP6O75581 1613 aa10.73□□□□□ -0.69
NUP88-205ENST00000572809 C2orf72A6NCS6 295 aa10.73□□□□□ -0.69
NUP88-205ENST00000572809 XPCQ01831 940 aaPredicted RBP10.73□□□□□ -0.69
NUP88-205ENST00000572809 SIN3AQ96ST3 1273 aa10.73□□□□□ -0.69
NUP88-205ENST00000572809 LHX6Q9UPM6 363 aa10.73□□□□□ -0.69
NUP88-205ENST00000572809 PNPLA6Q8IY17 1366 aa10.73□□□□□ -0.69
NUP88-205ENST00000572809 KIF3CO14782 793 aa10.72□□□□□ -0.69
NUP88-205ENST00000572809 TRIM26Q12899 539 aaPredicted RBP10.72□□□□□ -0.69
NUP88-205ENST00000572809 NEUROD1Q13562 356 aa10.72□□□□□ -0.69
NUP88-205ENST00000572809 KRT28Q7Z3Y7 464 aa10.72□□□□□ -0.69
NUP88-205ENST00000572809 HIRIP3Q9BW71 556 aaPredicted RBP10.72□□□□□ -0.69
NUP88-205ENST00000572809 MINK1Q8N4C8 1332 aaPredicted RBP10.72□□□□□ -0.69
NUP88-205ENST00000572809 DLC1Q96QB1 1528 aa10.72□□□□□ -0.69
NUP88-205ENST00000572809 ADGRB1O14514 1584 aa10.72□□□□□ -0.69
NUP88-205ENST00000572809 ADAMTS2O95450 1211 aa10.71□□□□□ -0.69
NUP88-205ENST00000572809 L3MBTL2Q969R5 705 aa10.71□□□□□ -0.69
NUP88-205ENST00000572809 WASLO00401 505 aaPredicted RBP10.7□□□□□ -0.7
NUP88-205ENST00000572809 PSME1Q06323 249 aa10.7□□□□□ -0.7
NUP88-205ENST00000572809 NBPF1Q3BBV0 1214 aa10.7□□□□□ -0.7
NUP88-205ENST00000572809 NGLY1Q96IV0 654 aa10.7□□□□□ -0.7
NUP88-205ENST00000572809 C8orf37Q96NL8 207 aa10.7□□□□□ -0.7
NUP88-205ENST00000572809 HCSTQ9UBK5 93 aa10.7□□□□□ -0.7
NUP88-205ENST00000572809 FMN2Q9NZ56 1722 aa10.7□□□□□ -0.7
NUP88-205ENST00000572809 AFF2P51816 1311 aa10.69□□□□□ -0.7
NUP88-205ENST00000572809 RXRBP28702 533 aa10.69□□□□□ -0.7
NUP88-205ENST00000572809 PMFBP1Q8TBY8 1022 aa10.69□□□□□ -0.7
NUP88-205ENST00000572809 MFRPQ9BY79 579 aa10.69□□□□□ -0.7
NUP88-205ENST00000572809 PCDHGA4Q9Y5G9 962 aa10.69□□□□□ -0.7
NUP88-205ENST00000572809 SPATA31A3Q5VYP0 1347 aa10.68□□□□□ -0.7
NUP88-205ENST00000572809 QTRT2Q9H974 415 aaKnown RBP10.68□□□□□ -0.7
NUP88-205ENST00000572809 PXDNQ92626 1479 aa10.68□□□□□ -0.7
NUP88-205ENST00000572809 ANKARQ7Z5J8 1434 aa10.67□□□□□ -0.7
NUP88-205ENST00000572809 EIF3AQ14152 1382 aaKnown RBP10.66□□□□□ -0.7
NUP88-205ENST00000572809 LMOD2Q6P5Q4 547 aa10.66□□□□□ -0.7
NUP88-205ENST00000572809 CDK19Q9BWU1 502 aa10.66□□□□□ -0.7
NUP88-205ENST00000572809 RGPD8O14715 1765 aaPredicted RBP10.66□□□□□ -0.7
NUP88-205ENST00000572809 PRR36Q9H6K5 1346 aa10.65□□□□□ -0.7
NUP88-205ENST00000572809 FNBP4Q8N3X1 1017 aaPredicted RBP10.65□□□□□ -0.7
NUP88-205ENST00000572809 NGDNQ8NEJ9 315 aaKnown RBP10.65□□□□□ -0.7
NUP88-205ENST00000572809 NUDT16Q96DE0 195 aaKnown RBP10.65□□□□□ -0.7
NUP88-205ENST00000572809 USP21Q9UK80 565 aa10.65□□□□□ -0.7
NUP88-205ENST00000572809 KIF1AQ12756 1690 aa10.65□□□□□ -0.7
NUP88-205ENST00000572809 KIAA1210Q9ULL0 1709 aa10.64□□□□□ -0.71
NUP88-205ENST00000572809 SLC34A2O95436 690 aa10.64□□□□□ -0.71
NUP88-205ENST00000572809 RBM6P78332 1123 aaKnown RBP10.64□□□□□ -0.71
NUP88-205ENST00000572809 ADGRD1Q6QNK2 874 aa10.64□□□□□ -0.71
NUP88-205ENST00000572809 ADGRB2O60241 1585 aa10.64□□□□□ -0.71
NUP88-205ENST00000572809 SBNO1A3KN83 1393 aa10.64□□□□□ -0.71
NUP88-205ENST00000572809 COL22A1Q8NFW1 1626 aaPredicted RBP10.63□□□□□ -0.71
NUP88-205ENST00000572809 NBR1Q14596 966 aa10.63□□□□□ -0.71
NUP88-205ENST00000572809 CABLES1Q8TDN4 633 aa10.63□□□□□ -0.71
NUP88-205ENST00000572809 GPRASP1Q5JY77 1395 aa10.63□□□□□ -0.71
NUP88-205ENST00000572809 USP32Q8NFA0 1604 aa10.62□□□□□ -0.71
NUP88-205ENST00000572809 CENPJQ9HC77 1338 aaPredicted RBP10.62□□□□□ -0.71
NUP88-205ENST00000572809 ARHGAP33O14559 1287 aa10.62□□□□□ -0.71
NUP88-205ENST00000572809 TRPC5Q9UL62 973 aaPredicted RBP10.62□□□□□ -0.71
NUP88-205ENST00000572809 TULP4Q9NRJ4 1543 aa10.62□□□□□ -0.71
NUP88-205ENST00000572809 ARHGEF28Q8N1W1 1705 aaKnown RBP10.61□□□□□ -0.71
NUP88-205ENST00000572809 TNS3Q68CZ2 1445 aa10.61□□□□□ -0.71
NUP88-205ENST00000572809 TMC2Q8TDI7 906 aa10.61□□□□□ -0.71
NUP88-205ENST00000572809 ARHGEF10O15013 1369 aa10.61□□□□□ -0.71
NUP88-205ENST00000572809 SRPK2P78362 688 aaKnown RBP10.6□□□□□ -0.71
NUP88-205ENST00000572809 NBPF8Q3BBV2 869 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms