RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 SYNMO15061 1565 aa14.24□□□□□ -0.13
CIITA-208ENST00000572665 SCAF11Q99590 1463 aaKnown RBP14.24□□□□□ -0.13
CIITA-208ENST00000572665 KDM5AP29375 1690 aaKnown RBP14.23□□□□□ -0.13
CIITA-208ENST00000572665 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.23□□□□□ -0.13
CIITA-208ENST00000572665 ARHGAP33O14559 1287 aa14.23□□□□□ -0.13
CIITA-208ENST00000572665 TATDN2Q93075 761 aa14.23□□□□□ -0.13
CIITA-208ENST00000572665 FAM217BQ9NTX9 383 aaPredicted RBP14.23□□□□□ -0.13
CIITA-208ENST00000572665 SLIT1O75093 1534 aa14.22□□□□□ -0.13
CIITA-208ENST00000572665 LMTK2Q8IWU2 1503 aa14.22□□□□□ -0.13
CIITA-208ENST00000572665 SSTR3P32745 418 aaPredicted RBP14.22□□□□□ -0.13
CIITA-208ENST00000572665 PIP4K2BP78356 416 aa14.22□□□□□ -0.13
CIITA-208ENST00000572665 PNMA3Q9UL41 463 aa14.22□□□□□ -0.13
CIITA-208ENST00000572665 RCCD1A6NED2 376 aa14.21□□□□□ -0.13
CIITA-208ENST00000572665 TXNDC2Q86VQ3 553 aa14.21□□□□□ -0.13
CIITA-208ENST00000572665 FAM163AQ96GL9 167 aaPredicted RBP14.21□□□□□ -0.13
CIITA-208ENST00000572665 CHIC2Q9UKJ5 165 aa14.21□□□□□ -0.13
CIITA-208ENST00000572665 ADGRL2O95490 1459 aa14.2□□□□□ -0.14
CIITA-208ENST00000572665 ARHGAP23Q9P227 1491 aa14.2□□□□□ -0.14
CIITA-208ENST00000572665 FAM205CA6NFA0 338 aa14.2□□□□□ -0.14
CIITA-208ENST00000572665 FAM50AQ14320 339 aaKnown RBP14.2□□□□□ -0.14
CIITA-208ENST00000572665 PIK3C2BO00750 1634 aa14.19□□□□□ -0.14
CIITA-208ENST00000572665 PBX2P40425 430 aa14.19□□□□□ -0.14
CIITA-208ENST00000572665 ZNF687Q8N1G0 1237 aa14.19□□□□□ -0.14
CIITA-208ENST00000572665 AXIN2Q9Y2T1 843 aa14.19□□□□□ -0.14
CIITA-208ENST00000572665 SOCS7O14512 581 aa14.18□□□□□ -0.14
CIITA-208ENST00000572665 DMRTA1Q5VZB9 504 aa14.18□□□□□ -0.14
CIITA-208ENST00000572665 SLC4A5Q9BY07 1137 aa14.18□□□□□ -0.14
CIITA-208ENST00000572665 EFCAB6Q5THR3 1501 aa14.18□□□□□ -0.14
CIITA-208ENST00000572665 DNAJB2P25686 324 aa14.17□□□□□ -0.14
CIITA-208ENST00000572665 SLC52A1Q9NWF4 448 aa14.17□□□□□ -0.14
CIITA-208ENST00000572665 KIAA1468Q9P260 1216 aa14.17□□□□□ -0.14
CIITA-208ENST00000572665 TMEM2Q9UHN6 1383 aa14.17□□□□□ -0.14
CIITA-208ENST00000572665 RPRD2Q5VT52 1461 aaKnown RBP14.17□□□□□ -0.14
CIITA-208ENST00000572665 LRRC7Q96NW7 1537 aa14.16□□□□□ -0.14
CIITA-208ENST00000572665 SMAPO00193 183 aa14.16□□□□□ -0.14
CIITA-208ENST00000572665 ILDR2Q71H61 639 aa14.16□□□□□ -0.14
CIITA-208ENST00000572665 STRCP1A6NGW2 1772 aa14.16□□□□□ -0.14
CIITA-208ENST00000572665 ANKRD50Q9ULJ7 1429 aa14.15□□□□□ -0.14
CIITA-208ENST00000572665 HSPA1LP34931 641 aa14.15□□□□□ -0.14
CIITA-208ENST00000572665 HDGFP51858 240 aaKnown RBP14.15□□□□□ -0.14
CIITA-208ENST00000572665 LCE2DQ5TA82 110 aaPredicted RBP14.15□□□□□ -0.14
CIITA-208ENST00000572665 BEGAINQ9BUH8 593 aa14.15□□□□□ -0.14
CIITA-208ENST00000572665 POTEB3A0JP26 581 aa14.14□□□□□ -0.15
CIITA-208ENST00000572665 LTKP29376 864 aa14.14□□□□□ -0.15
CIITA-208ENST00000572665 IDI1Q13907 227 aa14.14□□□□□ -0.15
CIITA-208ENST00000572665 POTEBQ6S5H4 581 aa14.14□□□□□ -0.15
CIITA-208ENST00000572665 HS3ST6Q96QI5 342 aa14.14□□□□□ -0.15
CIITA-208ENST00000572665 TMEM134Q9H6X4 195 aa14.14□□□□□ -0.15
CIITA-208ENST00000572665 GOPCQ9HD26 462 aa14.14□□□□□ -0.15
CIITA-208ENST00000572665 RABGEF1Q9UJ41 708 aa14.14□□□□□ -0.15
CIITA-208ENST00000572665 TIMELESSQ9UNS1 1208 aa14.13□□□□□ -0.15
CIITA-208ENST00000572665 ADGRB3O60242 1522 aa14.13□□□□□ -0.15
CIITA-208ENST00000572665 NOS1P29475 1434 aa14.13□□□□□ -0.15
CIITA-208ENST00000572665 TET3O43151 1660 aa14.13□□□□□ -0.15
CIITA-208ENST00000572665 GCC2Q8IWJ2 1684 aa14.12□□□□□ -0.15
CIITA-208ENST00000572665 VPS9D1Q9Y2B5 631 aa14.1□□□□□ -0.15
CIITA-208ENST00000572665 ROCK1Q13464 1354 aa14.09□□□□□ -0.15
CIITA-208ENST00000572665 MED1Q15648 1581 aaPredicted RBP14.09□□□□□ -0.15
CIITA-208ENST00000572665 SH3D19Q5HYK7 790 aa14.09□□□□□ -0.15
CIITA-208ENST00000572665 UNC13BO14795 1591 aa14.09□□□□□ -0.15
CIITA-208ENST00000572665 KCNA6P17658 529 aa14.08□□□□□ -0.16
CIITA-208ENST00000572665 ALKQ9UM73 1620 aa14.08□□□□□ -0.16
CIITA-208ENST00000572665 XIRP1Q702N8 1843 aaKnown RBP14.07□□□□□ -0.16
CIITA-208ENST00000572665 PPP1R15AO75807 674 aaPredicted RBP14.07□□□□□ -0.16
CIITA-208ENST00000572665 ERICH6Q7L0X2 663 aa14.07□□□□□ -0.16
CIITA-208ENST00000572665 SULF1Q8IWU6 871 aa14.07□□□□□ -0.16
CIITA-208ENST00000572665 RSPH6AQ9H0K4 717 aa14.07□□□□□ -0.16
CIITA-208ENST00000572665 SEPT9Q9UHD8 586 aaPredicted RBP14.07□□□□□ -0.16
CIITA-208ENST00000572665 CD46P15529 392 aa14.06□□□□□ -0.16
CIITA-208ENST00000572665 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.06□□□□□ -0.16
CIITA-208ENST00000572665 NKTRP30414 1462 aaKnown RBP14.06□□□□□ -0.16
CIITA-208ENST00000572665 DDX11L8A8MPP1 907 aa14.05□□□□□ -0.16
CIITA-208ENST00000572665 IQGAP3Q86VI3 1631 aa14.04□□□□□ -0.16
CIITA-208ENST00000572665 MYO5BQ9ULV0 1848 aa14.04□□□□□ -0.16
CIITA-208ENST00000572665 PROSER2Q86WR7 435 aaPredicted RBP14.04□□□□□ -0.16
CIITA-208ENST00000572665 PCMTD1Q96MG8 357 aaPredicted RBP14.04□□□□□ -0.16
CIITA-208ENST00000572665 SLC26A8Q96RN1 970 aa14.04□□□□□ -0.16
CIITA-208ENST00000572665 TK2O00142 265 aa14.03□□□□□ -0.16
CIITA-208ENST00000572665 TMEM94Q12767 1356 aa14.03□□□□□ -0.16
CIITA-208ENST00000572665 PLEKHG1Q9ULL1 1385 aa14.03□□□□□ -0.16
CIITA-208ENST00000572665 NWD1Q149M9 1564 aa14.03□□□□□ -0.16
CIITA-208ENST00000572665 TMEM131LA2VDJ0 1609 aa14.03□□□□□ -0.16
CIITA-208ENST00000572665 E9PCH4 1651 aa14.02□□□□□ -0.16
CIITA-208ENST00000572665 FAM135BQ49AJ0 1406 aa14.02□□□□□ -0.16
CIITA-208ENST00000572665 RIMS2Q9UQ26 1411 aa14.02□□□□□ -0.16
CIITA-208ENST00000572665 MSH6P52701 1360 aa14.02□□□□□ -0.17
CIITA-208ENST00000572665 SKIV2LQ15477 1246 aaKnown RBP14.02□□□□□ -0.17
CIITA-208ENST00000572665 FAM98CQ17RN3 349 aaKnown RBP14.02□□□□□ -0.17
CIITA-208ENST00000572665 MYSM1Q5VVJ2 828 aa14.01□□□□□ -0.17
CIITA-208ENST00000572665 TBC1D2Q9BYX2 928 aa14.01□□□□□ -0.17
CIITA-208ENST00000572665 CHD2O14647 1828 aaKnown RBP14.01□□□□□ -0.17
CIITA-208ENST00000572665 ZFYVE9O95405 1425 aa14□□□□□ -0.17
CIITA-208ENST00000572665 NUP155O75694 1391 aa14□□□□□ -0.17
CIITA-208ENST00000572665 BHMG1C9JSJ3 638 aaPredicted RBP14□□□□□ -0.17
CIITA-208ENST00000572665 SWT1Q5T5J6 900 aaKnown RBP14□□□□□ -0.17
CIITA-208ENST00000572665 C14orf37Q86TY3 774 aa14□□□□□ -0.17
CIITA-208ENST00000572665 NBPF3Q9H094 633 aa14□□□□□ -0.17
CIITA-208ENST00000572665 DIP2AQ14689 1571 aa14□□□□□ -0.17
CIITA-208ENST00000572665 ITGAEP38570 1179 aa13.99□□□□□ -0.17
CIITA-208ENST00000572665 LSM11P83369 360 aaKnown RBP eCLIP13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms