RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 AEBP1Q8IUX7 1158 aa18.38■□□□□ 0.53
CIITA-204ENST00000570546 TBC1D2Q9BYX2 928 aa18.38■□□□□ 0.53
CIITA-204ENST00000570546 GPS2Q13227 327 aa18.38■□□□□ 0.53
CIITA-204ENST00000570546 MAP7D2Q96T17 732 aa18.38■□□□□ 0.53
CIITA-204ENST00000570546 SDF4Q9BRK5 362 aa18.38■□□□□ 0.53
CIITA-204ENST00000570546 G3V3G9 751 aa18.38■□□□□ 0.53
CIITA-204ENST00000570546 SAFBQ15424 915 aaKnown RBP eCLIP18.38■□□□□ 0.53
CIITA-204ENST00000570546 DCAF8Q5TAQ9 597 aa18.38■□□□□ 0.53
CIITA-204ENST00000570546 MTERF4Q7Z6M4 381 aaKnown RBP18.38■□□□□ 0.53
CIITA-204ENST00000570546 ANKRD20A12PQ8NF67 263 aa18.37■□□□□ 0.53
CIITA-204ENST00000570546 ESCO1Q5FWF5 840 aa18.37■□□□□ 0.53
CIITA-204ENST00000570546 NUDT16Q96DE0 195 aaKnown RBP18.36■□□□□ 0.53
CIITA-204ENST00000570546 ADGRL1O94910 1474 aa18.36■□□□□ 0.53
CIITA-204ENST00000570546 ITSN2Q9NZM3 1697 aa18.36■□□□□ 0.53
CIITA-204ENST00000570546 ZNF608Q9ULD9 1512 aaPredicted RBP18.36■□□□□ 0.53
CIITA-204ENST00000570546 TRIM27P14373 513 aa18.36■□□□□ 0.53
CIITA-204ENST00000570546 SYTL4Q96C24 671 aaPredicted RBP18.35■□□□□ 0.53
CIITA-204ENST00000570546 PARD3Q8TEW0 1356 aa18.35■□□□□ 0.53
CIITA-204ENST00000570546 AMOTL1Q8IY63 956 aa18.35■□□□□ 0.53
CIITA-204ENST00000570546 ATF3P18847 181 aa18.35■□□□□ 0.53
CIITA-204ENST00000570546 NOS1P29475 1434 aa18.34■□□□□ 0.53
CIITA-204ENST00000570546 ESPNB1AK53 854 aa18.34■□□□□ 0.53
CIITA-204ENST00000570546 KINO60870 393 aaKnown RBP18.34■□□□□ 0.53
CIITA-204ENST00000570546 VPS53Q5VIR6 699 aa18.34■□□□□ 0.53
CIITA-204ENST00000570546 VPS37DQ86XT2 251 aa18.34■□□□□ 0.53
CIITA-204ENST00000570546 SRGAP3O43295 1099 aa18.34■□□□□ 0.53
CIITA-204ENST00000570546 ANKRD1Q15327 319 aa18.34■□□□□ 0.53
CIITA-204ENST00000570546 OLFM4Q6UX06 510 aa18.34■□□□□ 0.53
CIITA-204ENST00000570546 NSD2O96028 1365 aa18.34■□□□□ 0.53
CIITA-204ENST00000570546 IL1RAPL2Q9NP60 686 aa18.34■□□□□ 0.53
CIITA-204ENST00000570546 PCMTD1Q96MG8 357 aaPredicted RBP18.34■□□□□ 0.53
CIITA-204ENST00000570546 MCM10Q7L590 875 aa18.33■□□□□ 0.53
CIITA-204ENST00000570546 SMARCA5O60264 1052 aaPredicted RBP18.33■□□□□ 0.53
CIITA-204ENST00000570546 CCDC192P0DO97 292 aa18.33■□□□□ 0.53
CIITA-204ENST00000570546 DCTN1Q14203 1278 aa18.33■□□□□ 0.53
CIITA-204ENST00000570546 CCDC70Q6NSX1 233 aa18.33■□□□□ 0.53
CIITA-204ENST00000570546 ZNF530Q6P9A1 599 aaPredicted RBP18.33■□□□□ 0.53
CIITA-204ENST00000570546 WAPLQ7Z5K2 1190 aa18.33■□□□□ 0.53
CIITA-204ENST00000570546 MNS1Q8NEH6 495 aa18.33■□□□□ 0.52
CIITA-204ENST00000570546 CCDC47Q96A33 483 aaKnown RBP18.33■□□□□ 0.52
CIITA-204ENST00000570546 NOL10Q9BSC4 688 aaKnown RBP18.33■□□□□ 0.52
CIITA-204ENST00000570546 DNAJC5BQ9UF47 199 aa18.33■□□□□ 0.52
CIITA-204ENST00000570546 CCDC61Q9Y6R9 512 aa18.33■□□□□ 0.52
CIITA-204ENST00000570546 PRAG1Q86YV5 1406 aa18.33■□□□□ 0.52
CIITA-204ENST00000570546 ZNF396Q96N95 335 aaPredicted RBP18.33■□□□□ 0.52
CIITA-204ENST00000570546 SIL1Q9H173 461 aa18.33■□□□□ 0.52
CIITA-204ENST00000570546 SPC24Q8NBT2 197 aa18.32■□□□□ 0.52
CIITA-204ENST00000570546 ASXL1Q8IXJ9 1541 aa18.32■□□□□ 0.52
CIITA-204ENST00000570546 STK3Q13188 491 aa18.32■□□□□ 0.52
CIITA-204ENST00000570546 MIS18AQ9NYP9 233 aa18.32■□□□□ 0.52
CIITA-204ENST00000570546 EXOC6BQ9Y2D4 811 aa18.32■□□□□ 0.52
CIITA-204ENST00000570546 IPO7O95373 1038 aaKnown RBP18.32■□□□□ 0.52
CIITA-204ENST00000570546 BCL11BQ9C0K0 894 aaPredicted RBP18.32■□□□□ 0.52
CIITA-204ENST00000570546 PDRG1Q9NUG6 133 aa18.32■□□□□ 0.52
CIITA-204ENST00000570546 NUP153P49790 1475 aaKnown RBP18.31■□□□□ 0.52
CIITA-204ENST00000570546 CWC27Q6UX04 472 aaKnown RBP18.31■□□□□ 0.52
CIITA-204ENST00000570546 HMGN5P82970 282 aaKnown RBP18.31■□□□□ 0.52
CIITA-204ENST00000570546 CEBPZQ03701 1054 aaKnown RBP18.31■□□□□ 0.52
CIITA-204ENST00000570546 TEX35Q5T0J7 233 aa18.31■□□□□ 0.52
CIITA-204ENST00000570546 RBM10P98175 930 aaKnown RBP18.31■□□□□ 0.52
CIITA-204ENST00000570546 AACSQ86V21 672 aa18.31■□□□□ 0.52
CIITA-204ENST00000570546 ARGLU1Q9NWB6 273 aaPredicted RBP18.31■□□□□ 0.52
CIITA-204ENST00000570546 KRT85P78386 507 aa18.3■□□□□ 0.52
CIITA-204ENST00000570546 LARP1BQ659C4 914 aaKnown RBP18.3■□□□□ 0.52
CIITA-204ENST00000570546 TNMDQ9H2S6 317 aa18.3■□□□□ 0.52
CIITA-204ENST00000570546 NME9Q86XW9 330 aa18.3■□□□□ 0.52
CIITA-204ENST00000570546 NUTM1Q86Y26 1132 aa18.3■□□□□ 0.52
CIITA-204ENST00000570546 GNAT3A8MTJ3 354 aa18.3■□□□□ 0.52
CIITA-204ENST00000570546 MX1P20591 662 aa18.3■□□□□ 0.52
CIITA-204ENST00000570546 ZSCAN31Q96LW9 406 aaPredicted RBP18.3■□□□□ 0.52
CIITA-204ENST00000570546 JAKMIP1Q96N16 626 aaKnown RBP18.3■□□□□ 0.52
CIITA-204ENST00000570546 TBC1D32Q96NH3 1257 aa18.3■□□□□ 0.52
CIITA-204ENST00000570546 C14orf93Q9H972 538 aaKnown RBP18.29■□□□□ 0.52
CIITA-204ENST00000570546 EMILIN1Q9Y6C2 1016 aa18.29■□□□□ 0.52
CIITA-204ENST00000570546 NUP160Q12769 1436 aa18.29■□□□□ 0.52
CIITA-204ENST00000570546 KDM4AO75164 1064 aa18.29■□□□□ 0.52
CIITA-204ENST00000570546 SMC2O95347 1197 aa18.29■□□□□ 0.52
CIITA-204ENST00000570546 TNPO1Q92973 898 aaKnown RBP18.28■□□□□ 0.52
CIITA-204ENST00000570546 DHX16O60231 1041 aaKnown RBP18.28■□□□□ 0.52
CIITA-204ENST00000570546 MPNDQ8N594 471 aa18.28■□□□□ 0.52
CIITA-204ENST00000570546 PDILTQ8N807 584 aa18.28■□□□□ 0.52
CIITA-204ENST00000570546 TATP17735 454 aaPredicted RBP18.28■□□□□ 0.52
CIITA-204ENST00000570546 CD109Q6YHK3 1445 aa18.28■□□□□ 0.52
CIITA-204ENST00000570546 SLC26A8Q96RN1 970 aa18.28■□□□□ 0.52
CIITA-204ENST00000570546 BTBD11A6QL63 1104 aa18.27■□□□□ 0.52
CIITA-204ENST00000570546 TBC1D2BQ9UPU7 963 aa18.27■□□□□ 0.52
CIITA-204ENST00000570546 SYCE3A1L190 88 aa18.27■□□□□ 0.52
CIITA-204ENST00000570546 STK38Q15208 465 aa18.27■□□□□ 0.52
CIITA-204ENST00000570546 THEMISQ8N1K5 641 aaPredicted RBP18.27■□□□□ 0.52
CIITA-204ENST00000570546 BLOC1S2Q6QNY1 142 aa18.27■□□□□ 0.52
CIITA-204ENST00000570546 SSFA2P28290 1259 aa18.27■□□□□ 0.51
CIITA-204ENST00000570546 TTC39AQ5SRH9 613 aa18.26■□□□□ 0.51
CIITA-204ENST00000570546 IL16Q14005 1332 aa18.25■□□□□ 0.51
CIITA-204ENST00000570546 MYL6BP14649 208 aa18.25■□□□□ 0.51
CIITA-204ENST00000570546 BRMS1Q9HCU9 246 aa18.25■□□□□ 0.51
CIITA-204ENST00000570546 BMP2KLQ5H9B9 411 aa18.25■□□□□ 0.51
CIITA-204ENST00000570546 CCDC158Q5M9N0 1113 aa18.25■□□□□ 0.51
CIITA-204ENST00000570546 DUOX2Q9NRD8 1548 aa18.25■□□□□ 0.51
CIITA-204ENST00000570546 XBP1P17861 261 aa18.25■□□□□ 0.51
CIITA-204ENST00000570546 FMNL2Q96PY5 1086 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms