RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 AEBP1Q8IUX7 1158 aa11.09□□□□□ -0.63
LINC00558-201ENST00000569422 NLRP1Q9C000 1473 aa11.09□□□□□ -0.63
LINC00558-201ENST00000569422 IPO8O15397 1037 aaKnown RBP11.08□□□□□ -0.64
LINC00558-201ENST00000569422 HDGFP51858 240 aaKnown RBP11.08□□□□□ -0.64
LINC00558-201ENST00000569422 LNPKQ9C0E8 428 aa11.08□□□□□ -0.64
LINC00558-201ENST00000569422 USP19O94966 1318 aa11.08□□□□□ -0.64
LINC00558-201ENST00000569422 IL13P35225 146 aa11.08□□□□□ -0.64
LINC00558-201ENST00000569422 RIMBP3CA6NJZ7 1639 aa11.08□□□□□ -0.64
LINC00558-201ENST00000569422 RIMBP3BA6NNM3 1639 aa11.08□□□□□ -0.64
LINC00558-201ENST00000569422 RIMBP3Q9UFD9 1639 aa11.08□□□□□ -0.64
LINC00558-201ENST00000569422 FRAT2O75474 233 aaPredicted RBP11.08□□□□□ -0.64
LINC00558-201ENST00000569422 SULT6B1Q6IMI4 303 aa11.08□□□□□ -0.64
LINC00558-201ENST00000569422 CLTCQ00610 1675 aaKnown RBP11.07□□□□□ -0.64
LINC00558-201ENST00000569422 COL3A1P02461 1466 aaPredicted RBP11.07□□□□□ -0.64
LINC00558-201ENST00000569422 CT47B1P0C2W7 299 aaPredicted RBP11.07□□□□□ -0.64
LINC00558-201ENST00000569422 LTKP29376 864 aa11.07□□□□□ -0.64
LINC00558-201ENST00000569422 MBIPQ9NS73 344 aa11.07□□□□□ -0.64
LINC00558-201ENST00000569422 PRR36Q9H6K5 1346 aa11.07□□□□□ -0.64
LINC00558-201ENST00000569422 DIP2BQ9P265 1576 aa11.07□□□□□ -0.64
LINC00558-201ENST00000569422 USP32Q8NFA0 1604 aa11.07□□□□□ -0.64
LINC00558-201ENST00000569422 KRT24Q2M2I5 525 aa11.06□□□□□ -0.64
LINC00558-201ENST00000569422 PNPLA6Q8IY17 1366 aa11.06□□□□□ -0.64
LINC00558-201ENST00000569422 C8orf58Q8NAV2 365 aa11.06□□□□□ -0.64
LINC00558-201ENST00000569422 KIF16BQ96L93 1317 aa11.06□□□□□ -0.64
LINC00558-201ENST00000569422 IL16Q14005 1332 aa11.06□□□□□ -0.64
LINC00558-201ENST00000569422 VAMP4O75379 141 aa11.06□□□□□ -0.64
LINC00558-201ENST00000569422 NUTM2GQ5VZR2 741 aa11.06□□□□□ -0.64
LINC00558-201ENST00000569422 TWISTNBQ3B726 338 aaPredicted RBP11.05□□□□□ -0.64
LINC00558-201ENST00000569422 HSP90AB2PQ58FF8 381 aa11.05□□□□□ -0.64
LINC00558-201ENST00000569422 MCM10Q7L590 875 aa11.05□□□□□ -0.64
LINC00558-201ENST00000569422 BCCIPQ9P287 314 aaKnown RBP eCLIP11.05□□□□□ -0.64
LINC00558-201ENST00000569422 TNRQ92752 1358 aa11.05□□□□□ -0.64
LINC00558-201ENST00000569422 ACEP12821 1306 aa11.05□□□□□ -0.64
LINC00558-201ENST00000569422 ZBTB22O15209 634 aa11.05□□□□□ -0.64
LINC00558-201ENST00000569422 ZBTB40Q9NUA8 1239 aa11.05□□□□□ -0.64
LINC00558-201ENST00000569422 MIS18AQ9NYP9 233 aa11.05□□□□□ -0.64
LINC00558-201ENST00000569422 GNAI1P63096 354 aa11.04□□□□□ -0.64
LINC00558-201ENST00000569422 ANKRD45Q5TZF3 282 aa11.04□□□□□ -0.64
LINC00558-201ENST00000569422 ROBO2Q9HCK4 1378 aa11.04□□□□□ -0.64
LINC00558-201ENST00000569422 RBM10P98175 930 aaKnown RBP11.04□□□□□ -0.64
LINC00558-201ENST00000569422 BECN1Q14457 450 aa11.04□□□□□ -0.64
LINC00558-201ENST00000569422 USP35Q9P2H5 1018 aa11.04□□□□□ -0.64
LINC00558-201ENST00000569422 EIF4A2Q14240 407 aaKnown RBP11.03□□□□□ -0.64
LINC00558-201ENST00000569422 RBM33Q96EV2 1170 aaKnown RBP11.03□□□□□ -0.64
LINC00558-201ENST00000569422 LRRC7Q96NW7 1537 aa11.03□□□□□ -0.64
LINC00558-201ENST00000569422 APBB1O00213 710 aa11.03□□□□□ -0.64
LINC00558-201ENST00000569422 NGDNQ8NEJ9 315 aaKnown RBP11.03□□□□□ -0.64
LINC00558-201ENST00000569422 EDC4Q6P2E9 1401 aaKnown RBP11.03□□□□□ -0.64
LINC00558-201ENST00000569422 MRPL50Q8N5N7 158 aaKnown RBP11.02□□□□□ -0.64
LINC00558-201ENST00000569422 TTC21BQ7Z4L5 1316 aa11.02□□□□□ -0.65
LINC00558-201ENST00000569422 ADGRB2O60241 1585 aa11.02□□□□□ -0.65
LINC00558-201ENST00000569422 FAM135BQ49AJ0 1406 aa11.02□□□□□ -0.65
LINC00558-201ENST00000569422 CALD1Q05682 793 aaKnown RBP11.02□□□□□ -0.65
LINC00558-201ENST00000569422 ALDH1L2Q3SY69 923 aa11.02□□□□□ -0.65
LINC00558-201ENST00000569422 ZNF692Q9BU19 519 aaPredicted RBP11.02□□□□□ -0.65
LINC00558-201ENST00000569422 AMOTL2Q9Y2J4 779 aa11.02□□□□□ -0.65
LINC00558-201ENST00000569422 CPS1P31327 1500 aa11.02□□□□□ -0.65
LINC00558-201ENST00000569422 HDAC1Q13547 482 aaPredicted RBP11.02□□□□□ -0.65
LINC00558-201ENST00000569422 EID1Q9Y6B2 187 aa11.02□□□□□ -0.65
LINC00558-201ENST00000569422 MED14O60244 1454 aa11.01□□□□□ -0.65
LINC00558-201ENST00000569422 IFT57Q9NWB7 429 aa11.01□□□□□ -0.65
LINC00558-201ENST00000569422 TMEM2Q9UHN6 1383 aa11.01□□□□□ -0.65
LINC00558-201ENST00000569422 CPSF1Q10570 1443 aaKnown RBP11.01□□□□□ -0.65
LINC00558-201ENST00000569422 ATP7BP35670 1465 aa11.01□□□□□ -0.65
LINC00558-201ENST00000569422 FOXO3O43524 673 aa11.01□□□□□ -0.65
LINC00558-201ENST00000569422 LTV1Q96GA3 475 aaPredicted RBP11.01□□□□□ -0.65
LINC00558-201ENST00000569422 CFAP44Q96MT7 982 aa11.01□□□□□ -0.65
LINC00558-201ENST00000569422 C22orf23Q9BZE7 217 aa11.01□□□□□ -0.65
LINC00558-201ENST00000569422 ZBTB7CA1YPR0 619 aa11□□□□□ -0.65
LINC00558-201ENST00000569422 TBC1D32Q96NH3 1257 aa11□□□□□ -0.65
LINC00558-201ENST00000569422 ZBTB7BO15156 539 aaPredicted RBP11□□□□□ -0.65
LINC00558-201ENST00000569422 CHD1LQ86WJ1 897 aa11□□□□□ -0.65
LINC00558-201ENST00000569422 TBC1D2Q9BYX2 928 aa11□□□□□ -0.65
LINC00558-201ENST00000569422 LMOD3Q0VAK6 560 aa11□□□□□ -0.65
LINC00558-201ENST00000569422 GSE1Q14687 1217 aa11□□□□□ -0.65
LINC00558-201ENST00000569422 SMC5Q8IY18 1101 aa11□□□□□ -0.65
LINC00558-201ENST00000569422 SPATA31D1Q6ZQQ2 1576 aa10.99□□□□□ -0.65
LINC00558-201ENST00000569422 AGLP35573 1532 aa10.99□□□□□ -0.65
LINC00558-201ENST00000569422 NAP1L5Q96NT1 182 aaPredicted RBP10.99□□□□□ -0.65
LINC00558-201ENST00000569422 NECTIN2Q92692 538 aa10.99□□□□□ -0.65
LINC00558-201ENST00000569422 TRHP20396 242 aaPredicted RBP10.98□□□□□ -0.65
LINC00558-201ENST00000569422 AMPHP49418 695 aa10.98□□□□□ -0.65
LINC00558-201ENST00000569422 IL27Q8NEV9 243 aa10.98□□□□□ -0.65
LINC00558-201ENST00000569422 NUCB1Q02818 461 aa10.98□□□□□ -0.65
LINC00558-201ENST00000569422 SLC4A10Q6U841 1118 aa10.98□□□□□ -0.65
LINC00558-201ENST00000569422 ZNF853P0CG23 659 aa10.97□□□□□ -0.65
LINC00558-201ENST00000569422 VSIG10Q8N0Z9 540 aa10.97□□□□□ -0.65
LINC00558-201ENST00000569422 NLRP6P59044 892 aa10.97□□□□□ -0.65
LINC00558-201ENST00000569422 DLC1Q96QB1 1528 aa10.97□□□□□ -0.65
LINC00558-201ENST00000569422 SIRT2Q8IXJ6 389 aa10.96□□□□□ -0.65
LINC00558-201ENST00000569422 RTF1Q92541 710 aaKnown RBP10.96□□□□□ -0.66
LINC00558-201ENST00000569422 FOXD4L1Q9NU39 408 aa10.96□□□□□ -0.66
LINC00558-201ENST00000569422 MAP3K19Q56UN5 1328 aa10.96□□□□□ -0.66
LINC00558-201ENST00000569422 AATKQ6ZMQ8 1374 aa10.95□□□□□ -0.66
LINC00558-201ENST00000569422 SLC4A2P04920 1241 aa10.95□□□□□ -0.66
LINC00558-201ENST00000569422 API5Q9BZZ5 524 aaKnown RBP10.95□□□□□ -0.66
LINC00558-201ENST00000569422 MAP2P11137 1827 aaKnown RBP10.95□□□□□ -0.66
LINC00558-201ENST00000569422 C16orf71Q8IYS4 520 aaPredicted RBP10.95□□□□□ -0.66
LINC00558-201ENST00000569422 ZNF428Q96B54 188 aa10.95□□□□□ -0.66
LINC00558-201ENST00000569422 ADAMTS13Q76LX8 1427 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms