RNA–Protein interactions for RNA: ENST00000568373.5

SMPD3-211, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,073 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-211ENST00000568373 CALD1Q05682 793 aaKnown RBP23.34■■□□□ 1.33
SMPD3-211ENST00000568373 RLBP1P12271 317 aa23.33■■□□□ 1.33
SMPD3-211ENST00000568373 AAMPQ13685 434 aa23.33■■□□□ 1.33
SMPD3-211ENST00000568373 PIK3C2AO00443 1686 aa23.33■■□□□ 1.33
SMPD3-211ENST00000568373 DLG5Q8TDM6 1919 aa23.32■■□□□ 1.32
SMPD3-211ENST00000568373 SMC4Q9NTJ3 1288 aa23.32■■□□□ 1.32
SMPD3-211ENST00000568373 ZKSCAN2Q63HK3 967 aa23.31■■□□□ 1.32
SMPD3-211ENST00000568373 TNNQ9UQP3 1299 aa23.31■■□□□ 1.32
SMPD3-211ENST00000568373 LMOD3Q0VAK6 560 aa23.31■■□□□ 1.32
SMPD3-211ENST00000568373 SKAP1Q86WV1 359 aa23.31■■□□□ 1.32
SMPD3-211ENST00000568373 RGPD1P0DJD0 1748 aa23.3■■□□□ 1.32
SMPD3-211ENST00000568373 HSP90AB2PQ58FF8 381 aa23.3■■□□□ 1.32
SMPD3-211ENST00000568373 SSH1Q8WYL5 1049 aa23.3■■□□□ 1.32
SMPD3-211ENST00000568373 MAP3K19Q56UN5 1328 aa23.29■■□□□ 1.32
SMPD3-211ENST00000568373 NPHP4O75161 1426 aaPredicted RBP23.28■■□□□ 1.32
SMPD3-211ENST00000568373 SOX12O15370 315 aa23.28■■□□□ 1.32
SMPD3-211ENST00000568373 PDE4AP27815 886 aa23.28■■□□□ 1.32
SMPD3-211ENST00000568373 SULT6B1Q6IMI4 303 aa23.28■■□□□ 1.32
SMPD3-211ENST00000568373 THUMPD2Q9BTF0 503 aaKnown RBP23.28■■□□□ 1.32
SMPD3-211ENST00000568373 IFT57Q9NWB7 429 aa23.28■■□□□ 1.32
SMPD3-211ENST00000568373 MSH5O43196 834 aa23.28■■□□□ 1.32
SMPD3-211ENST00000568373 AEBP1Q8IUX7 1158 aa23.28■■□□□ 1.32
SMPD3-211ENST00000568373 SBNO1A3KN83 1393 aa23.27■■□□□ 1.32
SMPD3-211ENST00000568373 FLT4P35916 1363 aa23.26■■□□□ 1.31
SMPD3-211ENST00000568373 GNAI1P63096 354 aa23.26■■□□□ 1.31
SMPD3-211ENST00000568373 DZIP1LQ8IYY4 767 aaKnown RBP23.26■■□□□ 1.31
SMPD3-211ENST00000568373 BACH2Q9BYV9 841 aa23.26■■□□□ 1.31
SMPD3-211ENST00000568373 LAS1LQ9Y4W2 734 aaKnown RBP23.26■■□□□ 1.31
SMPD3-211ENST00000568373 USP54Q70EL1 1684 aa23.26■■□□□ 1.31
SMPD3-211ENST00000568373 ZNF853P0CG23 659 aa23.26■■□□□ 1.31
SMPD3-211ENST00000568373 FTSJ3Q8IY81 847 aaKnown RBP23.26■■□□□ 1.31
SMPD3-211ENST00000568373 ZNF428Q96B54 188 aa23.26■■□□□ 1.31
SMPD3-211ENST00000568373 IGHDP01880 384 aa23.25■■□□□ 1.31
SMPD3-211ENST00000568373 MVPQ14764 893 aaKnown RBP23.25■■□□□ 1.31
SMPD3-211ENST00000568373 ALDH1L2Q3SY69 923 aa23.25■■□□□ 1.31
SMPD3-211ENST00000568373 ADGRL3Q9HAR2 1447 aa23.25■■□□□ 1.31
SMPD3-211ENST00000568373 MARF1Q9Y4F3 1742 aaKnown RBP23.24■■□□□ 1.31
SMPD3-211ENST00000568373 NLRP6P59044 892 aa23.24■■□□□ 1.31
SMPD3-211ENST00000568373 ARHGEF10O15013 1369 aa23.24■■□□□ 1.31
SMPD3-211ENST00000568373 TRIM27P14373 513 aa23.23■■□□□ 1.31
SMPD3-211ENST00000568373 KIF16BQ96L93 1317 aa23.23■■□□□ 1.31
SMPD3-211ENST00000568373 ATF7IPQ6VMQ6 1270 aa23.23■■□□□ 1.31
SMPD3-211ENST00000568373 PHF8Q9UPP1 1060 aa23.23■■□□□ 1.31
SMPD3-211ENST00000568373 LMTK3Q96Q04 1460 aa23.22■■□□□ 1.31
SMPD3-211ENST00000568373 CFAP44Q96MT7 982 aa23.22■■□□□ 1.31
SMPD3-211ENST00000568373 RBM33Q96EV2 1170 aaKnown RBP23.21■■□□□ 1.31
SMPD3-211ENST00000568373 MBIPQ9NS73 344 aa23.21■■□□□ 1.31
SMPD3-211ENST00000568373 NOB1Q9ULX3 412 aaKnown RBP23.21■■□□□ 1.31
SMPD3-211ENST00000568373 FAM83GA6ND36 823 aa23.2■■□□□ 1.3
SMPD3-211ENST00000568373 AMPHP49418 695 aa23.2■■□□□ 1.3
SMPD3-211ENST00000568373 IPO8O15397 1037 aaKnown RBP23.2■■□□□ 1.3
SMPD3-211ENST00000568373 ANP32AP39687 249 aaKnown RBP23.2■■□□□ 1.3
SMPD3-211ENST00000568373 BRPF1P55201 1214 aaPredicted RBP23.2■■□□□ 1.3
SMPD3-211ENST00000568373 PCDHB15Q9Y5E8 787 aa23.2■■□□□ 1.3
SMPD3-211ENST00000568373 KIF24Q5T7B8 1368 aa23.2■■□□□ 1.3
SMPD3-211ENST00000568373 ABTB2Q8N961 1025 aa23.19■■□□□ 1.3
SMPD3-211ENST00000568373 VAMP4O75379 141 aa23.18■■□□□ 1.3
SMPD3-211ENST00000568373 KDRP35968 1356 aa23.17■■□□□ 1.3
SMPD3-211ENST00000568373 PAK3O75914 559 aaPredicted RBP23.17■■□□□ 1.3
SMPD3-211ENST00000568373 DCTN1Q14203 1278 aa23.17■■□□□ 1.3
SMPD3-211ENST00000568373 NWD1Q149M9 1564 aa23.17■■□□□ 1.3
SMPD3-211ENST00000568373 NUTM2GQ5VZR2 741 aa23.17■■□□□ 1.3
SMPD3-211ENST00000568373 TSPYL6Q8N831 410 aa23.16■■□□□ 1.3
SMPD3-211ENST00000568373 DDX19BQ9UMR2 479 aa23.16■■□□□ 1.3
SMPD3-211ENST00000568373 IGSF1Q8N6C5 1336 aa23.15■■□□□ 1.3
SMPD3-211ENST00000568373 RGS3P49796 1198 aa23.15■■□□□ 1.3
SMPD3-211ENST00000568373 HOXC9P31274 260 aa23.13■■□□□ 1.29
SMPD3-211ENST00000568373 ITPRIPQ8IWB1 547 aa23.13■■□□□ 1.29
SMPD3-211ENST00000568373 EYA1Q99502 592 aa23.13■■□□□ 1.29
SMPD3-211ENST00000568373 TWISTNBQ3B726 338 aaPredicted RBP23.13■■□□□ 1.29
SMPD3-211ENST00000568373 ESCO1Q5FWF5 840 aa23.13■■□□□ 1.29
SMPD3-211ENST00000568373 C14orf37Q86TY3 774 aa23.12■■□□□ 1.29
SMPD3-211ENST00000568373 TMEM57Q8N5G2 664 aa23.12■■□□□ 1.29
SMPD3-211ENST00000568373 MRPL50Q8N5N7 158 aaKnown RBP23.12■■□□□ 1.29
SMPD3-211ENST00000568373 ANP32EQ9BTT0 268 aa23.12■■□□□ 1.29
SMPD3-211ENST00000568373 RWDD1Q9H446 243 aaPredicted RBP23.12■■□□□ 1.29
SMPD3-211ENST00000568373 C8orf58Q8NAV2 365 aa23.11■■□□□ 1.29
SMPD3-211ENST00000568373 FAM161AQ3B820 660 aa23.1■■□□□ 1.29
SMPD3-211ENST00000568373 ARHGAP45Q92619 1136 aa23.1■■□□□ 1.29
SMPD3-211ENST00000568373 ELL2O00472 640 aaPredicted RBP23.1■■□□□ 1.29
SMPD3-211ENST00000568373 PSME1Q06323 249 aa23.1■■□□□ 1.29
SMPD3-211ENST00000568373 MCM10Q7L590 875 aa23.1■■□□□ 1.29
SMPD3-211ENST00000568373 IPO9Q96P70 1041 aaKnown RBP23.1■■□□□ 1.29
SMPD3-211ENST00000568373 RTL1A6NKG5 1358 aa23.09■■□□□ 1.29
SMPD3-211ENST00000568373 CHL1O00533 1208 aa23.09■■□□□ 1.29
SMPD3-211ENST00000568373 MTHFSDQ2M296 383 aaKnown RBP23.09■■□□□ 1.29
SMPD3-211ENST00000568373 LTN1O94822 1766 aa23.07■■□□□ 1.28
SMPD3-211ENST00000568373 C8orf34Q49A92 452 aa23.07■■□□□ 1.28
SMPD3-211ENST00000568373 CRB1P82279 1406 aa23.07■■□□□ 1.28
SMPD3-211ENST00000568373 ZBTB40Q9NUA8 1239 aa23.07■■□□□ 1.28
SMPD3-211ENST00000568373 NFAT5O94916 1531 aa23.07■■□□□ 1.28
SMPD3-211ENST00000568373 ERICH6Q7L0X2 663 aa23.06■■□□□ 1.28
SMPD3-211ENST00000568373 NPM2Q86SE8 214 aaKnown RBP23.06■■□□□ 1.28
SMPD3-211ENST00000568373 GAS2L2Q8NHY3 880 aa23.06■■□□□ 1.28
SMPD3-211ENST00000568373 FOXO3O43524 673 aa23.05■■□□□ 1.28
SMPD3-211ENST00000568373 HDAC1Q13547 482 aaPredicted RBP23.05■■□□□ 1.28
SMPD3-211ENST00000568373 PROSER2Q86WR7 435 aaPredicted RBP23.04■■□□□ 1.28
SMPD3-211ENST00000568373 RTF1Q92541 710 aaKnown RBP23.04■■□□□ 1.28
SMPD3-211ENST00000568373 KIAA0232Q92628 1395 aa23.04■■□□□ 1.28
SMPD3-211ENST00000568373 HAP1P54257 671 aaPredicted RBP23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms