RNA–Protein interactions for RNA: ENST00000566756.5

CMTM3-213, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2

Gene CMTM3, Length 1,950 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-213ENST00000566756 TTC21BQ7Z4L5 1316 aa21.38■■□□□ 1.01
CMTM3-213ENST00000566756 MVPQ14764 893 aaKnown RBP21.37■■□□□ 1.01
CMTM3-213ENST00000566756 PCDHB15Q9Y5E8 787 aa21.37■■□□□ 1.01
CMTM3-213ENST00000566756 NUTM2FA1L443 756 aa21.37■■□□□ 1.01
CMTM3-213ENST00000566756 COG3Q96JB2 828 aa21.37■■□□□ 1.01
CMTM3-213ENST00000566756 TMPOP42166 694 aaKnown RBP21.36■■□□□ 1.01
CMTM3-213ENST00000566756 TTC21AQ8NDW8 1320 aa21.35■■□□□ 1.01
CMTM3-213ENST00000566756 POLKQ9UBT6 870 aa21.35■■□□□ 1.01
CMTM3-213ENST00000566756 SLC4A3P48751 1232 aa21.34■■□□□ 1.01
CMTM3-213ENST00000566756 DZIP1LQ8IYY4 767 aaKnown RBP21.34■■□□□ 1.01
CMTM3-213ENST00000566756 OVOS2A0A0J9YW53 1432 aa21.33■■□□□ 1.01
CMTM3-213ENST00000566756 OVOS2Q6IE36 1432 aa21.33■■□□□ 1.01
CMTM3-213ENST00000566756 BECN1Q14457 450 aa21.33■■□□□ 1.01
CMTM3-213ENST00000566756 TRIM35Q9UPQ4 493 aa21.32■■□□□ 1
CMTM3-213ENST00000566756 CDK12Q9NYV4 1490 aaPredicted RBP21.32■■□□□ 1
CMTM3-213ENST00000566756 GSE1Q14687 1217 aa21.32■■□□□ 1
CMTM3-213ENST00000566756 PDZRN3Q9UPQ7 1066 aa21.32■■□□□ 1
CMTM3-213ENST00000566756 KDM4FA0A1W2PPD8 638 aa21.31■■□□□ 1
CMTM3-213ENST00000566756 DIAPH1O60610 1272 aaKnown RBP21.31■■□□□ 1
CMTM3-213ENST00000566756 NGDNQ8NEJ9 315 aaKnown RBP21.3■■□□□ 1
CMTM3-213ENST00000566756 UPF2Q9HAU5 1272 aaKnown RBP21.3■■□□□ 1
CMTM3-213ENST00000566756 ZRANB1Q9UGI0 708 aa21.3■■□□□ 1
CMTM3-213ENST00000566756 HDAC1Q13547 482 aaPredicted RBP21.3■■□□□ 1
CMTM3-213ENST00000566756 FTSJ3Q8IY81 847 aaKnown RBP21.3■■□□□ 1
CMTM3-213ENST00000566756 BCL2L13Q9BXK5 485 aa21.3■■□□□ 1
CMTM3-213ENST00000566756 TNNQ9UQP3 1299 aa21.3■■□□□ 1
CMTM3-213ENST00000566756 DDX19BQ9UMR2 479 aa21.29■■□□□ 1
CMTM3-213ENST00000566756 USP54Q70EL1 1684 aa21.29■■□□□ 1
CMTM3-213ENST00000566756 USP31Q70CQ4 1352 aa21.29■■□□□ 1
CMTM3-213ENST00000566756 U2SURPO15042 1029 aaKnown RBP21.28■■□□□ 1
CMTM3-213ENST00000566756 SMC4Q9NTJ3 1288 aa21.28■■□□□ 1
CMTM3-213ENST00000566756 EXOSC9Q06265 439 aaKnown RBP21.27■■□□□ 1
CMTM3-213ENST00000566756 ZNF428Q96B54 188 aa21.27■■□□□ 1
CMTM3-213ENST00000566756 FCHSD2O94868 740 aa21.27■□□□□ 0.99
CMTM3-213ENST00000566756 SEC24BO95487 1268 aa21.27■□□□□ 0.99
CMTM3-213ENST00000566756 TBC1D32Q96NH3 1257 aa21.27■□□□□ 0.99
CMTM3-213ENST00000566756 KIF16BQ96L93 1317 aa21.26■□□□□ 0.99
CMTM3-213ENST00000566756 ALDH1L2Q3SY69 923 aa21.26■□□□□ 0.99
CMTM3-213ENST00000566756 ATF7IPQ6VMQ6 1270 aa21.26■□□□□ 0.99
CMTM3-213ENST00000566756 PIK3C2AO00443 1686 aa21.26■□□□□ 0.99
CMTM3-213ENST00000566756 FBLN1P23142 703 aa21.25■□□□□ 0.99
CMTM3-213ENST00000566756 LRRC7Q96NW7 1537 aa21.25■□□□□ 0.99
CMTM3-213ENST00000566756 TRIM27P14373 513 aa21.25■□□□□ 0.99
CMTM3-213ENST00000566756 BRPF1P55201 1214 aaPredicted RBP21.25■□□□□ 0.99
CMTM3-213ENST00000566756 SSH1Q8WYL5 1049 aa21.25■□□□□ 0.99
CMTM3-213ENST00000566756 TSR2Q969E8 191 aaKnown RBP21.25■□□□□ 0.99
CMTM3-213ENST00000566756 EMILIN1Q9Y6C2 1016 aa21.25■□□□□ 0.99
CMTM3-213ENST00000566756 NCOA3Q9Y6Q9 1424 aa21.24■□□□□ 0.99
CMTM3-213ENST00000566756 LMTK3Q96Q04 1460 aa21.24■□□□□ 0.99
CMTM3-213ENST00000566756 IPO8O15397 1037 aaKnown RBP21.24■□□□□ 0.99
CMTM3-213ENST00000566756 PHF8Q9UPP1 1060 aa21.24■□□□□ 0.99
CMTM3-213ENST00000566756 STRCP1A6NGW2 1772 aa21.23■□□□□ 0.99
CMTM3-213ENST00000566756 RIPK4P57078 832 aa21.23■□□□□ 0.99
CMTM3-213ENST00000566756 PROSER2Q86WR7 435 aaPredicted RBP21.23■□□□□ 0.99
CMTM3-213ENST00000566756 RBM33Q96EV2 1170 aaKnown RBP21.22■□□□□ 0.99
CMTM3-213ENST00000566756 MARF1Q9Y4F3 1742 aaKnown RBP21.21■□□□□ 0.99
CMTM3-213ENST00000566756 IL13P35225 146 aa21.21■□□□□ 0.99
CMTM3-213ENST00000566756 SMC5Q8IY18 1101 aa21.21■□□□□ 0.99
CMTM3-213ENST00000566756 STRCQ7RTU9 1775 aa21.21■□□□□ 0.99
CMTM3-213ENST00000566756 C14orf37Q86TY3 774 aa21.2■□□□□ 0.98
CMTM3-213ENST00000566756 HSPA2P54652 639 aa21.19■□□□□ 0.98
CMTM3-213ENST00000566756 RRS1Q15050 365 aaKnown RBP21.19■□□□□ 0.98
CMTM3-213ENST00000566756 C19orf44Q9H6X5 657 aa21.19■□□□□ 0.98
CMTM3-213ENST00000566756 FRAT2O75474 233 aaPredicted RBP21.18■□□□□ 0.98
CMTM3-213ENST00000566756 DCCP43146 1447 aa21.18■□□□□ 0.98
CMTM3-213ENST00000566756 CALD1Q05682 793 aaKnown RBP21.18■□□□□ 0.98
CMTM3-213ENST00000566756 RSPH6AQ9H0K4 717 aa21.18■□□□□ 0.98
CMTM3-213ENST00000566756 ZBTB40Q9NUA8 1239 aa21.18■□□□□ 0.98
CMTM3-213ENST00000566756 NOB1Q9ULX3 412 aaKnown RBP21.18■□□□□ 0.98
CMTM3-213ENST00000566756 PEAK1Q9H792 1746 aa21.17■□□□□ 0.98
CMTM3-213ENST00000566756 ITPRIPQ8IWB1 547 aa21.17■□□□□ 0.98
CMTM3-213ENST00000566756 CHMP4BQ9H444 224 aaKnown RBP21.17■□□□□ 0.98
CMTM3-213ENST00000566756 KIF1AQ12756 1690 aa21.16■□□□□ 0.98
CMTM3-213ENST00000566756 ESCO1Q5FWF5 840 aa21.16■□□□□ 0.98
CMTM3-213ENST00000566756 ANTXR1Q9H6X2 564 aa21.16■□□□□ 0.98
CMTM3-213ENST00000566756 KIF24Q5T7B8 1368 aa21.14■□□□□ 0.98
CMTM3-213ENST00000566756 TMEM94Q12767 1356 aa21.14■□□□□ 0.97
CMTM3-213ENST00000566756 NLRP6P59044 892 aa21.14■□□□□ 0.97
CMTM3-213ENST00000566756 TMEM57Q8N5G2 664 aa21.14■□□□□ 0.97
CMTM3-213ENST00000566756 ARHGAP45Q92619 1136 aa21.14■□□□□ 0.97
CMTM3-213ENST00000566756 NFE2L2Q16236 605 aa21.13■□□□□ 0.97
CMTM3-213ENST00000566756 RGPD1P0DJD0 1748 aa21.13■□□□□ 0.97
CMTM3-213ENST00000566756 C1orf167Q5SNV9 1468 aa21.13■□□□□ 0.97
CMTM3-213ENST00000566756 SBNO1A3KN83 1393 aa21.13■□□□□ 0.97
CMTM3-213ENST00000566756 ABTB2Q8N961 1025 aa21.12■□□□□ 0.97
CMTM3-213ENST00000566756 PRKAR2BP31323 418 aa21.12■□□□□ 0.97
CMTM3-213ENST00000566756 PSME1Q06323 249 aa21.11■□□□□ 0.97
CMTM3-213ENST00000566756 TBC1D2Q9BYX2 928 aa21.11■□□□□ 0.97
CMTM3-213ENST00000566756 MAP3K19Q56UN5 1328 aa21.11■□□□□ 0.97
CMTM3-213ENST00000566756 FLT4P35916 1363 aa21.11■□□□□ 0.97
CMTM3-213ENST00000566756 XIRP1Q702N8 1843 aaKnown RBP21.1■□□□□ 0.97
CMTM3-213ENST00000566756 EIF4A2Q14240 407 aaKnown RBP21.1■□□□□ 0.97
CMTM3-213ENST00000566756 ORAI2Q96SN7 254 aa21.1■□□□□ 0.97
CMTM3-213ENST00000566756 IFT57Q9NWB7 429 aa21.1■□□□□ 0.97
CMTM3-213ENST00000566756 NUCB1Q02818 461 aa21.09■□□□□ 0.97
CMTM3-213ENST00000566756 MST1RQ04912 1400 aa21.09■□□□□ 0.97
CMTM3-213ENST00000566756 TRPM3Q9HCF6 1732 aaPredicted RBP21.09■□□□□ 0.97
CMTM3-213ENST00000566756 GNAI1P63096 354 aa21.08■□□□□ 0.97
CMTM3-213ENST00000566756 C22orf23Q9BZE7 217 aa21.08■□□□□ 0.97
CMTM3-213ENST00000566756 ATF3P18847 181 aa21.08■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms