RNA–Protein interactions for RNA: ENST00000566370.1

LINC00563-201, long intergenic non-protein coding RNA 563, humanhuman

BASIC

Gene LINC00563, Length 1,400 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00563-201ENST00000566370 PTPRUQ92729 1446 aa17.08■□□□□ 0.33
LINC00563-201ENST00000566370 MVPQ14764 893 aaKnown RBP17.08■□□□□ 0.32
LINC00563-201ENST00000566370 TSR2Q969E8 191 aaKnown RBP17.08■□□□□ 0.32
LINC00563-201ENST00000566370 DDX19BQ9UMR2 479 aa17.08■□□□□ 0.32
LINC00563-201ENST00000566370 OVOS2A0A0J9YW53 1432 aa17.08■□□□□ 0.32
LINC00563-201ENST00000566370 OVOS2Q6IE36 1432 aa17.08■□□□□ 0.32
LINC00563-201ENST00000566370 IFT57Q9NWB7 429 aa17.07■□□□□ 0.32
LINC00563-201ENST00000566370 NGDNQ8NEJ9 315 aaKnown RBP17.06■□□□□ 0.32
LINC00563-201ENST00000566370 ZNF142P52746 1687 aaPredicted RBP17.06■□□□□ 0.32
LINC00563-201ENST00000566370 HMOX1P09601 288 aa17.05■□□□□ 0.32
LINC00563-201ENST00000566370 BCL2L13Q9BXK5 485 aa17.05■□□□□ 0.32
LINC00563-201ENST00000566370 ATF7IPQ6VMQ6 1270 aa17.04■□□□□ 0.32
LINC00563-201ENST00000566370 NPM2Q86SE8 214 aaKnown RBP17.04■□□□□ 0.32
LINC00563-201ENST00000566370 USP31Q70CQ4 1352 aa17.04■□□□□ 0.32
LINC00563-201ENST00000566370 NCKAP5LQ9HCH0 1330 aa17.04■□□□□ 0.32
LINC00563-201ENST00000566370 RGS3P49796 1198 aa17.03■□□□□ 0.32
LINC00563-201ENST00000566370 RRS1Q15050 365 aaKnown RBP17.03■□□□□ 0.32
LINC00563-201ENST00000566370 ANKLE2Q86XL3 938 aa17.03■□□□□ 0.32
LINC00563-201ENST00000566370 LAS1LQ9Y4W2 734 aaKnown RBP17.03■□□□□ 0.32
LINC00563-201ENST00000566370 FMN2Q9NZ56 1722 aa17.02■□□□□ 0.32
LINC00563-201ENST00000566370 BRPF1P55201 1214 aaPredicted RBP17.02■□□□□ 0.31
LINC00563-201ENST00000566370 SSH1Q8WYL5 1049 aa17.02■□□□□ 0.31
LINC00563-201ENST00000566370 DAXXQ9UER7 740 aaPredicted RBP17.02■□□□□ 0.31
LINC00563-201ENST00000566370 ZRANB1Q9UGI0 708 aa17.02■□□□□ 0.31
LINC00563-201ENST00000566370 VIRMAQ69YN4 1812 aaKnown RBP17.02■□□□□ 0.31
LINC00563-201ENST00000566370 KIF24Q5T7B8 1368 aa17.01■□□□□ 0.31
LINC00563-201ENST00000566370 ITPRIPQ8IWB1 547 aa17■□□□□ 0.31
LINC00563-201ENST00000566370 SBNO1A3KN83 1393 aa17■□□□□ 0.31
LINC00563-201ENST00000566370 ARHGEF10O15013 1369 aa17■□□□□ 0.31
LINC00563-201ENST00000566370 DLG5Q8TDM6 1919 aa17■□□□□ 0.31
LINC00563-201ENST00000566370 SSH2Q76I76 1423 aa17■□□□□ 0.31
LINC00563-201ENST00000566370 FLT4P35916 1363 aa16.99■□□□□ 0.31
LINC00563-201ENST00000566370 NUTM2FA1L443 756 aa16.99■□□□□ 0.31
LINC00563-201ENST00000566370 ARHGAP45Q92619 1136 aa16.99■□□□□ 0.31
LINC00563-201ENST00000566370 CFAP44Q96MT7 982 aa16.99■□□□□ 0.31
LINC00563-201ENST00000566370 IGHDP01880 384 aa16.98■□□□□ 0.31
LINC00563-201ENST00000566370 RLBP1P12271 317 aa16.98■□□□□ 0.31
LINC00563-201ENST00000566370 TRIM27P14373 513 aa16.98■□□□□ 0.31
LINC00563-201ENST00000566370 FBLN1P23142 703 aa16.98■□□□□ 0.31
LINC00563-201ENST00000566370 EIF4A2Q14240 407 aaKnown RBP16.98■□□□□ 0.31
LINC00563-201ENST00000566370 PHACTR3Q96KR7 559 aa16.98■□□□□ 0.31
LINC00563-201ENST00000566370 NOB1Q9ULX3 412 aaKnown RBP16.98■□□□□ 0.31
LINC00563-201ENST00000566370 USP54Q70EL1 1684 aa16.97■□□□□ 0.31
LINC00563-201ENST00000566370 CHD2O14647 1828 aaKnown RBP16.96■□□□□ 0.31
LINC00563-201ENST00000566370 RGPD1P0DJD0 1748 aa16.96■□□□□ 0.3
LINC00563-201ENST00000566370 ZNF853P0CG23 659 aa16.96■□□□□ 0.3
LINC00563-201ENST00000566370 AMPHP49418 695 aa16.96■□□□□ 0.3
LINC00563-201ENST00000566370 SULT6B1Q6IMI4 303 aa16.96■□□□□ 0.3
LINC00563-201ENST00000566370 API5Q9BZZ5 524 aaKnown RBP16.96■□□□□ 0.3
LINC00563-201ENST00000566370 UPF2Q9HAU5 1272 aaKnown RBP16.96■□□□□ 0.3
LINC00563-201ENST00000566370 SETD1BQ9UPS6 1966 aaKnown RBP16.95■□□□□ 0.3
LINC00563-201ENST00000566370 ADAMTSL3P82987 1691 aa16.95■□□□□ 0.3
LINC00563-201ENST00000566370 RGPD8O14715 1765 aaPredicted RBP16.95■□□□□ 0.3
LINC00563-201ENST00000566370 HDAC1Q13547 482 aaPredicted RBP16.95■□□□□ 0.3
LINC00563-201ENST00000566370 KCNA6P17658 529 aa16.94■□□□□ 0.3
LINC00563-201ENST00000566370 TWISTNBQ3B726 338 aaPredicted RBP16.94■□□□□ 0.3
LINC00563-201ENST00000566370 PEAK1Q9H792 1746 aa16.94■□□□□ 0.3
LINC00563-201ENST00000566370 PIK3C2AO00443 1686 aa16.93■□□□□ 0.3
LINC00563-201ENST00000566370 C8orf34Q49A92 452 aa16.93■□□□□ 0.3
LINC00563-201ENST00000566370 RTF1Q92541 710 aaKnown RBP16.93■□□□□ 0.3
LINC00563-201ENST00000566370 MBIPQ9NS73 344 aa16.93■□□□□ 0.3
LINC00563-201ENST00000566370 PCDHB15Q9Y5E8 787 aa16.93■□□□□ 0.3
LINC00563-201ENST00000566370 VAMP4O75379 141 aa16.92■□□□□ 0.3
LINC00563-201ENST00000566370 GAS2L2Q8NHY3 880 aa16.92■□□□□ 0.3
LINC00563-201ENST00000566370 TNNQ9UQP3 1299 aa16.92■□□□□ 0.3
LINC00563-201ENST00000566370 NLRP6P59044 892 aa16.91■□□□□ 0.3
LINC00563-201ENST00000566370 TMEM57Q8N5G2 664 aa16.91■□□□□ 0.3
LINC00563-201ENST00000566370 MRPL50Q8N5N7 158 aaKnown RBP16.91■□□□□ 0.3
LINC00563-201ENST00000566370 PDZRN3Q9UPQ7 1066 aa16.91■□□□□ 0.3
LINC00563-201ENST00000566370 MAP3K19Q56UN5 1328 aa16.91■□□□□ 0.3
LINC00563-201ENST00000566370 RTL1A6NKG5 1358 aa16.91■□□□□ 0.3
LINC00563-201ENST00000566370 KIAA0232Q92628 1395 aa16.91■□□□□ 0.3
LINC00563-201ENST00000566370 RTL5Q5HYW3 569 aaPredicted RBP16.9■□□□□ 0.3
LINC00563-201ENST00000566370 HTATSF1O43719 755 aaKnown RBP16.89■□□□□ 0.29
LINC00563-201ENST00000566370 HSP90AB2PQ58FF8 381 aa16.89■□□□□ 0.29
LINC00563-201ENST00000566370 SKAP1Q86WV1 359 aa16.89■□□□□ 0.29
LINC00563-201ENST00000566370 ADGRL3Q9HAR2 1447 aa16.89■□□□□ 0.29
LINC00563-201ENST00000566370 SOX12O15370 315 aa16.88■□□□□ 0.29
LINC00563-201ENST00000566370 THUMPD2Q9BTF0 503 aaKnown RBP16.88■□□□□ 0.29
LINC00563-201ENST00000566370 PHF8Q9UPP1 1060 aa16.88■□□□□ 0.29
LINC00563-201ENST00000566370 NPHP4O75161 1426 aaPredicted RBP16.88■□□□□ 0.29
LINC00563-201ENST00000566370 ZBTB40Q9NUA8 1239 aa16.87■□□□□ 0.29
LINC00563-201ENST00000566370 KDRP35968 1356 aa16.87■□□□□ 0.29
LINC00563-201ENST00000566370 IGSF1Q8N6C5 1336 aa16.87■□□□□ 0.29
LINC00563-201ENST00000566370 AEBP1Q8IUX7 1158 aa16.87■□□□□ 0.29
LINC00563-201ENST00000566370 ABTB2Q8N961 1025 aa16.87■□□□□ 0.29
LINC00563-201ENST00000566370 PAK3O75914 559 aaPredicted RBP16.86■□□□□ 0.29
LINC00563-201ENST00000566370 GCC1Q96CN9 775 aa16.86■□□□□ 0.29
LINC00563-201ENST00000566370 ABCC4O15439 1325 aa16.85■□□□□ 0.29
LINC00563-201ENST00000566370 CHL1O00533 1208 aa16.85■□□□□ 0.29
LINC00563-201ENST00000566370 EIF5BO60841 1220 aaKnown RBP16.85■□□□□ 0.29
LINC00563-201ENST00000566370 BECN1Q14457 450 aa16.85■□□□□ 0.29
LINC00563-201ENST00000566370 C14orf37Q86TY3 774 aa16.85■□□□□ 0.29
LINC00563-201ENST00000566370 SMC5Q8IY18 1101 aa16.85■□□□□ 0.29
LINC00563-201ENST00000566370 KCNH5Q8NCM2 988 aa16.85■□□□□ 0.29
LINC00563-201ENST00000566370 PTPRCP08575 1304 aa16.84■□□□□ 0.29
LINC00563-201ENST00000566370 SOS1Q07889 1333 aaPredicted RBP16.84■□□□□ 0.29
LINC00563-201ENST00000566370 FAM83GA6ND36 823 aa16.83■□□□□ 0.28
LINC00563-201ENST00000566370 PIAS4Q8N2W9 510 aaPredicted RBP16.83■□□□□ 0.28
LINC00563-201ENST00000566370 CHMP4AQ9BY43 222 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms