RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 BMP1P13497 986 aa9.69□□□□□ -0.86
VPS35-204ENST00000563884 FAM69CQ0P6D2 419 aa9.69□□□□□ -0.86
VPS35-204ENST00000563884 MYSM1Q5VVJ2 828 aa9.69□□□□□ -0.86
VPS35-204ENST00000563884 TDRD9Q8NDG6 1382 aaKnown RBP9.69□□□□□ -0.86
VPS35-204ENST00000563884 LIMD1Q9UGP4 676 aa9.69□□□□□ -0.86
VPS35-204ENST00000563884 RAD54L2Q9Y4B4 1467 aa9.67□□□□□ -0.86
VPS35-204ENST00000563884 F12P00748 615 aaPredicted RBP9.67□□□□□ -0.86
VPS35-204ENST00000563884 NFX1Q12986 1120 aaKnown RBP9.67□□□□□ -0.86
VPS35-204ENST00000563884 AGERQ15109 404 aa9.67□□□□□ -0.86
VPS35-204ENST00000563884 QPCTQ16769 361 aa9.67□□□□□ -0.86
VPS35-204ENST00000563884 FAM174AQ8TBP5 190 aa9.67□□□□□ -0.86
VPS35-204ENST00000563884 NNTQ13423 1086 aa9.66□□□□□ -0.86
VPS35-204ENST00000563884 FOXJ1Q92949 421 aa9.66□□□□□ -0.86
VPS35-204ENST00000563884 TERTO14746 1132 aaKnown RBP9.65□□□□□ -0.86
VPS35-204ENST00000563884 PER1O15534 1290 aaPredicted RBP9.65□□□□□ -0.86
VPS35-204ENST00000563884 ARID5BQ14865 1188 aa9.65□□□□□ -0.86
VPS35-204ENST00000563884 TRIM46Q7Z4K8 759 aa9.65□□□□□ -0.86
VPS35-204ENST00000563884 MPNDQ8N594 471 aa9.65□□□□□ -0.86
VPS35-204ENST00000563884 TUSC1Q2TAM9 212 aa9.64□□□□□ -0.87
VPS35-204ENST00000563884 DISP3Q9P2K9 1392 aa9.63□□□□□ -0.87
VPS35-204ENST00000563884 SPATA31D1Q6ZQQ2 1576 aa9.63□□□□□ -0.87
VPS35-204ENST00000563884 LILRB3O75022 631 aa9.63□□□□□ -0.87
VPS35-204ENST00000563884 CLK2P49760 499 aaKnown RBP9.63□□□□□ -0.87
VPS35-204ENST00000563884 HELBQ8NG08 1087 aaPredicted RBP9.63□□□□□ -0.87
VPS35-204ENST00000563884 GRIN2AQ12879 1464 aa9.62□□□□□ -0.87
VPS35-204ENST00000563884 FGD5Q6ZNL6 1462 aa9.62□□□□□ -0.87
VPS35-204ENST00000563884 WDR4P57081 412 aaKnown RBP9.62□□□□□ -0.87
VPS35-204ENST00000563884 RSPH6AQ9H0K4 717 aa9.62□□□□□ -0.87
VPS35-204ENST00000563884 POLR3EQ9NVU0 708 aa9.62□□□□□ -0.87
VPS35-204ENST00000563884 ABCA5Q8WWZ7 1642 aa9.61□□□□□ -0.87
VPS35-204ENST00000563884 ADH1CP00326 375 aa9.61□□□□□ -0.87
VPS35-204ENST00000563884 RTL5Q5HYW3 569 aaPredicted RBP9.61□□□□□ -0.87
VPS35-204ENST00000563884 BPHLQ86WA6 291 aaPredicted RBP9.61□□□□□ -0.87
VPS35-204ENST00000563884 ARMC2Q8NEN0 867 aa9.6□□□□□ -0.87
VPS35-204ENST00000563884 ZFP42Q96MM3 310 aa9.6□□□□□ -0.87
VPS35-204ENST00000563884 ADAMTS12P58397 1594 aa9.59□□□□□ -0.87
VPS35-204ENST00000563884 TIMP2P16035 220 aa9.59□□□□□ -0.87
VPS35-204ENST00000563884 SLC16A10Q8TF71 515 aa9.59□□□□□ -0.87
VPS35-204ENST00000563884 CDK15Q96Q40 435 aa9.59□□□□□ -0.87
VPS35-204ENST00000563884 ADCY10Q96PN6 1610 aa9.59□□□□□ -0.87
VPS35-204ENST00000563884 CCDC88BA6NC98 1476 aa9.59□□□□□ -0.87
VPS35-204ENST00000563884 PPRC1Q5VV67 1664 aaKnown RBP9.58□□□□□ -0.88
VPS35-204ENST00000563884 NUP160Q12769 1436 aa9.58□□□□□ -0.88
VPS35-204ENST00000563884 SCARF1Q14162 830 aa9.58□□□□□ -0.88
VPS35-204ENST00000563884 C4orf48Q5BLP8 95 aa9.58□□□□□ -0.88
VPS35-204ENST00000563884 MRPL14Q6P1L8 145 aaKnown RBP9.58□□□□□ -0.88
VPS35-204ENST00000563884 NXF1Q9UBU9 619 aaKnown RBP9.58□□□□□ -0.88
VPS35-204ENST00000563884 WIPF1O43516 503 aa9.57□□□□□ -0.88
VPS35-204ENST00000563884 INSM1Q01101 510 aaPredicted RBP9.57□□□□□ -0.88
VPS35-204ENST00000563884 NBPF14Q5TI25 921 aa9.57□□□□□ -0.88
VPS35-204ENST00000563884 ATP1B4Q9UN42 357 aaPredicted RBP9.57□□□□□ -0.88
VPS35-204ENST00000563884 ILDR2Q71H61 639 aa9.56□□□□□ -0.88
VPS35-204ENST00000563884 PURBQ96QR8 312 aaKnown RBP9.56□□□□□ -0.88
VPS35-204ENST00000563884 ZIC2O95409 532 aaPredicted RBP9.55□□□□□ -0.88
VPS35-204ENST00000563884 NR5A1Q13285 461 aa9.55□□□□□ -0.88
VPS35-204ENST00000563884 LCE2CQ5TA81 110 aa9.55□□□□□ -0.88
VPS35-204ENST00000563884 MAGEB6P1A0A0J9YX57 407 aa9.54□□□□□ -0.88
VPS35-204ENST00000563884 NR3C2P08235 984 aa9.54□□□□□ -0.88
VPS35-204ENST00000563884 KLF16Q9BXK1 252 aaPredicted RBP9.54□□□□□ -0.88
VPS35-204ENST00000563884 ZFAND3Q9H8U3 227 aa9.54□□□□□ -0.88
VPS35-204ENST00000563884 GRM5P41594 1212 aa9.53□□□□□ -0.88
VPS35-204ENST00000563884 VEGFBP49765 207 aa9.53□□□□□ -0.88
VPS35-204ENST00000563884 TPRNQ4KMQ1 711 aa9.53□□□□□ -0.88
VPS35-204ENST00000563884 ITPKCQ96DU7 683 aa9.53□□□□□ -0.88
VPS35-204ENST00000563884 GLI2P10070 1586 aa9.53□□□□□ -0.88
VPS35-204ENST00000563884 CTDSPL2Q05D32 466 aa9.52□□□□□ -0.89
VPS35-204ENST00000563884 SH3RF1Q7Z6J0 888 aa9.52□□□□□ -0.89
VPS35-204ENST00000563884 PRG4Q92954 1404 aaPredicted RBP9.52□□□□□ -0.89
VPS35-204ENST00000563884 CARD14Q9BXL6 1004 aa9.52□□□□□ -0.89
VPS35-204ENST00000563884 TEX14Q8IWB6 1497 aa9.52□□□□□ -0.89
VPS35-204ENST00000563884 FSHRP23945 695 aa9.51□□□□□ -0.89
VPS35-204ENST00000563884 C6orf118Q5T5N4 469 aa9.51□□□□□ -0.89
VPS35-204ENST00000563884 VASH1Q7L8A9 365 aaPredicted RBP9.51□□□□□ -0.89
VPS35-204ENST00000563884 SH3BP5LQ7L8J4 393 aa9.51□□□□□ -0.89
VPS35-204ENST00000563884 NPAS3Q8IXF0 933 aa9.51□□□□□ -0.89
VPS35-204ENST00000563884 C1QTNF2Q9BXJ5 285 aa9.51□□□□□ -0.89
VPS35-204ENST00000563884 KDM4CQ9H3R0 1056 aa9.51□□□□□ -0.89
VPS35-204ENST00000563884 GPBP1L1Q9HC44 474 aaPredicted RBP9.51□□□□□ -0.89
VPS35-204ENST00000563884 STK17AQ9UEE5 414 aa9.51□□□□□ -0.89
VPS35-204ENST00000563884 SKIV2LQ15477 1246 aaKnown RBP9.5□□□□□ -0.89
VPS35-204ENST00000563884 GPKOWQ92917 476 aaPredicted RBP eCLIP9.5□□□□□ -0.89
VPS35-204ENST00000563884 IRF7Q92985 503 aa9.5□□□□□ -0.89
VPS35-204ENST00000563884 ABCA10Q8WWZ4 1543 aa9.5□□□□□ -0.89
VPS35-204ENST00000563884 SOBPA7XYQ1 873 aa9.49□□□□□ -0.89
VPS35-204ENST00000563884 UPP2O95045 317 aa9.49□□□□□ -0.89
VPS35-204ENST00000563884 CUX1P39880 1505 aa9.49□□□□□ -0.89
VPS35-204ENST00000563884 BMP2P12643 396 aa9.48□□□□□ -0.89
VPS35-204ENST00000563884 GMPRP36959 345 aa9.48□□□□□ -0.89
VPS35-204ENST00000563884 SH3D19Q5HYK7 790 aa9.48□□□□□ -0.89
VPS35-204ENST00000563884 TRMT44Q8IYL2 757 aaKnown RBP9.48□□□□□ -0.89
VPS35-204ENST00000563884 LRRN4Q8WUT4 740 aa9.48□□□□□ -0.89
VPS35-204ENST00000563884 DDRGK1Q96HY6 314 aa9.48□□□□□ -0.89
VPS35-204ENST00000563884 MAP4K5Q9Y4K4 846 aa9.48□□□□□ -0.89
VPS35-204ENST00000563884 PCF11O94913 1555 aaKnown RBP9.48□□□□□ -0.89
VPS35-204ENST00000563884 MAP3K4Q9Y6R4 1608 aa9.48□□□□□ -0.89
VPS35-204ENST00000563884 RUSC2Q8N2Y8 1516 aa9.47□□□□□ -0.89
VPS35-204ENST00000563884 H3BM21 787 aa9.47□□□□□ -0.89
VPS35-204ENST00000563884 MAN1A2O60476 641 aa9.47□□□□□ -0.89
VPS35-204ENST00000563884 PROCA1Q8NCQ7 364 aaPredicted RBP9.47□□□□□ -0.89
VPS35-204ENST00000563884 FAM117AQ9C073 453 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 172.6 ms