RNA–Protein interactions for RNA: ENST00000563455.1

SMPD3-205, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-205ENST00000563455 MYT1Q01538 1121 aa18.31■□□□□ 0.52
SMPD3-205ENST00000563455 KRT27Q7Z3Y8 459 aa18.31■□□□□ 0.52
SMPD3-205ENST00000563455 BTG4Q9NY30 223 aa18.31■□□□□ 0.52
SMPD3-205ENST00000563455 MARF1Q9Y4F3 1742 aaKnown RBP18.3■□□□□ 0.52
SMPD3-205ENST00000563455 TOPAZ1Q8N9V7 1692 aa18.3■□□□□ 0.52
SMPD3-205ENST00000563455 USP6P35125 1406 aa18.3■□□□□ 0.52
SMPD3-205ENST00000563455 TTC21BQ7Z4L5 1316 aa18.29■□□□□ 0.52
SMPD3-205ENST00000563455 MON2Q7Z3U7 1717 aa18.29■□□□□ 0.52
SMPD3-205ENST00000563455 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.29■□□□□ 0.52
SMPD3-205ENST00000563455 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.28■□□□□ 0.52
SMPD3-205ENST00000563455 RUNDC1Q96C34 613 aa18.28■□□□□ 0.52
SMPD3-205ENST00000563455 PRDM11Q9NQV5 511 aa18.28■□□□□ 0.52
SMPD3-205ENST00000563455 TNNT2P45379 298 aaPredicted RBP18.27■□□□□ 0.52
SMPD3-205ENST00000563455 KIF20BQ96Q89 1820 aa18.27■□□□□ 0.52
SMPD3-205ENST00000563455 AKAP12Q02952 1782 aa18.27■□□□□ 0.51
SMPD3-205ENST00000563455 USP31Q70CQ4 1352 aa18.26■□□□□ 0.51
SMPD3-205ENST00000563455 SSH2Q76I76 1423 aa18.25■□□□□ 0.51
SMPD3-205ENST00000563455 DIAPH1O60610 1272 aaKnown RBP18.25■□□□□ 0.51
SMPD3-205ENST00000563455 NEFMP07197 916 aa18.24■□□□□ 0.51
SMPD3-205ENST00000563455 FAM98CQ17RN3 349 aaKnown RBP18.24■□□□□ 0.51
SMPD3-205ENST00000563455 CCDC27Q2M243 656 aa18.24■□□□□ 0.51
SMPD3-205ENST00000563455 RGPD8O14715 1765 aaPredicted RBP18.23■□□□□ 0.51
SMPD3-205ENST00000563455 GLI3P10071 1580 aa18.23■□□□□ 0.51
SMPD3-205ENST00000563455 KIF24Q5T7B8 1368 aa18.23■□□□□ 0.51
SMPD3-205ENST00000563455 FCHSD2O94868 740 aa18.22■□□□□ 0.51
SMPD3-205ENST00000563455 BAG6P46379 1132 aa18.22■□□□□ 0.51
SMPD3-205ENST00000563455 EVA1CP58658 441 aa18.22■□□□□ 0.51
SMPD3-205ENST00000563455 GOLGA2Q08379 1002 aa18.22■□□□□ 0.51
SMPD3-205ENST00000563455 ABTB2Q8N961 1025 aa18.22■□□□□ 0.51
SMPD3-205ENST00000563455 POLKQ9UBT6 870 aa18.22■□□□□ 0.51
SMPD3-205ENST00000563455 NWD2Q9ULI1 1742 aa18.22■□□□□ 0.51
SMPD3-205ENST00000563455 NME9Q86XW9 330 aa18.21■□□□□ 0.51
SMPD3-205ENST00000563455 SPATA31A5Q5VU36 1347 aa18.21■□□□□ 0.51
SMPD3-205ENST00000563455 SPATA31A7Q8IWB4 1347 aa18.21■□□□□ 0.51
SMPD3-205ENST00000563455 U2AF1L5P0DN76 240 aaPredicted RBP18.2■□□□□ 0.5
SMPD3-205ENST00000563455 U2AF1Q01081 240 aaKnown RBP eCLIP18.2■□□□□ 0.5
SMPD3-205ENST00000563455 PELP1Q8IZL8 1130 aaKnown RBP18.2■□□□□ 0.5
SMPD3-205ENST00000563455 OVOS2A0A0J9YW53 1432 aa18.2■□□□□ 0.5
SMPD3-205ENST00000563455 OVOS2Q6IE36 1432 aa18.2■□□□□ 0.5
SMPD3-205ENST00000563455 ZNF521Q96K83 1311 aa18.2■□□□□ 0.5
SMPD3-205ENST00000563455 NRKQ7Z2Y5 1582 aa18.18■□□□□ 0.5
SMPD3-205ENST00000563455 E9PSI1 815 aa18.18■□□□□ 0.5
SMPD3-205ENST00000563455 ZC3H6P61129 1189 aaKnown RBP18.18■□□□□ 0.5
SMPD3-205ENST00000563455 WDR63Q8IWG1 891 aa18.18■□□□□ 0.5
SMPD3-205ENST00000563455 SUPT16HQ9Y5B9 1047 aaKnown RBP18.18■□□□□ 0.5
SMPD3-205ENST00000563455 APAF1O14727 1248 aa18.17■□□□□ 0.5
SMPD3-205ENST00000563455 DEFB132Q7Z7B7 95 aa18.17■□□□□ 0.5
SMPD3-205ENST00000563455 STRN4Q9NRL3 753 aa18.17■□□□□ 0.5
SMPD3-205ENST00000563455 COL3A1P02461 1466 aaPredicted RBP18.17■□□□□ 0.5
SMPD3-205ENST00000563455 COL14A1Q05707 1796 aaKnown RBP18.17■□□□□ 0.5
SMPD3-205ENST00000563455 KIAA0232Q92628 1395 aa18.17■□□□□ 0.5
SMPD3-205ENST00000563455 RNF123Q5XPI4 1314 aa18.16■□□□□ 0.5
SMPD3-205ENST00000563455 MAPK8IP3Q9UPT6 1336 aa18.16■□□□□ 0.5
SMPD3-205ENST00000563455 TRPM3Q9HCF6 1732 aaPredicted RBP18.15■□□□□ 0.5
SMPD3-205ENST00000563455 NUTM2GQ5VZR2 741 aa18.15■□□□□ 0.5
SMPD3-205ENST00000563455 FAM196AQ6ZSG2 479 aa18.15■□□□□ 0.5
SMPD3-205ENST00000563455 SPATA31A1Q5TZJ5 1347 aa18.15■□□□□ 0.5
SMPD3-205ENST00000563455 PLCH1Q4KWH8 1693 aa18.15■□□□□ 0.5
SMPD3-205ENST00000563455 U2SURPO15042 1029 aaKnown RBP18.14■□□□□ 0.49
SMPD3-205ENST00000563455 CHRNA2Q15822 529 aa18.14■□□□□ 0.49
SMPD3-205ENST00000563455 TCP11L2Q8N4U5 519 aa18.14■□□□□ 0.49
SMPD3-205ENST00000563455 ALS2Q96Q42 1657 aa18.14■□□□□ 0.49
SMPD3-205ENST00000563455 FKBP8Q14318 412 aa18.13■□□□□ 0.49
SMPD3-205ENST00000563455 KCNH5Q8NCM2 988 aa18.13■□□□□ 0.49
SMPD3-205ENST00000563455 THRAP3Q9Y2W1 955 aaKnown RBP18.13■□□□□ 0.49
SMPD3-205ENST00000563455 GCP02774 474 aa18.12■□□□□ 0.49
SMPD3-205ENST00000563455 NLRP6P59044 892 aa18.12■□□□□ 0.49
SMPD3-205ENST00000563455 CALD1Q05682 793 aaKnown RBP18.12■□□□□ 0.49
SMPD3-205ENST00000563455 SLFN5Q08AF3 891 aa18.12■□□□□ 0.49
SMPD3-205ENST00000563455 BARGINQ6ZT62 677 aa18.12■□□□□ 0.49
SMPD3-205ENST00000563455 TRMT2AQ8IZ69 625 aaKnown RBP18.12■□□□□ 0.49
SMPD3-205ENST00000563455 RCAN3Q9UKA8 241 aa18.12■□□□□ 0.49
SMPD3-205ENST00000563455 WWC1Q8IX03 1113 aa18.11■□□□□ 0.49
SMPD3-205ENST00000563455 CCDC146Q8IYE0 955 aa18.11■□□□□ 0.49
SMPD3-205ENST00000563455 CPDO75976 1380 aa18.11■□□□□ 0.49
SMPD3-205ENST00000563455 ABCA3Q99758 1704 aa18.11■□□□□ 0.49
SMPD3-205ENST00000563455 USP54Q70EL1 1684 aa18.1■□□□□ 0.49
SMPD3-205ENST00000563455 IL16Q14005 1332 aa18.1■□□□□ 0.49
SMPD3-205ENST00000563455 PPM1GO15355 546 aaPredicted RBP18.1■□□□□ 0.49
SMPD3-205ENST00000563455 IL13P35225 146 aa18.1■□□□□ 0.49
SMPD3-205ENST00000563455 PLEKHF1Q96S99 279 aa18.1■□□□□ 0.49
SMPD3-205ENST00000563455 FLT4P35916 1363 aa18.09■□□□□ 0.49
SMPD3-205ENST00000563455 USP19O94966 1318 aa18.09■□□□□ 0.49
SMPD3-205ENST00000563455 CT47B1P0C2W7 299 aaPredicted RBP18.09■□□□□ 0.49
SMPD3-205ENST00000563455 LMOD3Q0VAK6 560 aa18.09■□□□□ 0.49
SMPD3-205ENST00000563455 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.09■□□□□ 0.49
SMPD3-205ENST00000563455 MYH16Q9H6N6 1097 aa18.09■□□□□ 0.49
SMPD3-205ENST00000563455 USP35Q9P2H5 1018 aa18.09■□□□□ 0.49
SMPD3-205ENST00000563455 SALL2Q9Y467 1007 aaPredicted RBP18.09■□□□□ 0.49
SMPD3-205ENST00000563455 RTL1A6NKG5 1358 aa18.08■□□□□ 0.49
SMPD3-205ENST00000563455 EMILIN1Q9Y6C2 1016 aa18.08■□□□□ 0.48
SMPD3-205ENST00000563455 DUSP27Q5VZP5 1158 aa18.07■□□□□ 0.48
SMPD3-205ENST00000563455 EN1Q05925 392 aaPredicted RBP18.06■□□□□ 0.48
SMPD3-205ENST00000563455 EP400Q96L91 3159 aa18.05■□□□□ 0.48
SMPD3-205ENST00000563455 TMPOP42166 694 aaKnown RBP18.05■□□□□ 0.48
SMPD3-205ENST00000563455 LARP1Q6PKG0 1096 aaKnown RBP18.05■□□□□ 0.48
SMPD3-205ENST00000563455 RSPH6AQ9H0K4 717 aa18.05■□□□□ 0.48
SMPD3-205ENST00000563455 NRAPQ86VF7 1730 aa18.05■□□□□ 0.48
SMPD3-205ENST00000563455 MAP2P11137 1827 aaKnown RBP18.05■□□□□ 0.48
SMPD3-205ENST00000563455 AMPHP49418 695 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms