RNA–Protein interactions for RNA: ENST00000561940.1

SMG1-204, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 964 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-204ENST00000561940 NR3C2P08235 984 aa12.45□□□□□ -0.42
SMG1-204ENST00000561940 KCTD15Q96SI1 283 aaPredicted RBP12.45□□□□□ -0.42
SMG1-204ENST00000561940 ZMYND15Q9H091 742 aa12.44□□□□□ -0.42
SMG1-204ENST00000561940 AAASQ9NRG9 546 aa12.44□□□□□ -0.42
SMG1-204ENST00000561940 DACH1Q9UI36 760 aa12.44□□□□□ -0.42
SMG1-204ENST00000561940 AXIN1O15169 862 aa12.43□□□□□ -0.42
SMG1-204ENST00000561940 VAC14Q08AM6 782 aa12.43□□□□□ -0.42
SMG1-204ENST00000561940 NR5A1Q13285 461 aa12.43□□□□□ -0.42
SMG1-204ENST00000561940 MAP4K5Q9Y4K4 846 aa12.43□□□□□ -0.42
SMG1-204ENST00000561940 WDR4P57081 412 aaKnown RBP12.42□□□□□ -0.42
SMG1-204ENST00000561940 RAD21O60216 631 aa12.41□□□□□ -0.42
SMG1-204ENST00000561940 CAPN5O15484 640 aaPredicted RBP12.4□□□□□ -0.42
SMG1-204ENST00000561940 CLUAP1Q96AJ1 413 aa12.4□□□□□ -0.42
SMG1-204ENST00000561940 ZFAND3Q9H8U3 227 aa12.39□□□□□ -0.43
SMG1-204ENST00000561940 CDV3Q9UKY7 258 aaKnown RBP12.39□□□□□ -0.43
SMG1-204ENST00000561940 GIGYF1O75420 1035 aaPredicted RBP12.38□□□□□ -0.43
SMG1-204ENST00000561940 CTC1Q2NKJ3 1217 aa12.38□□□□□ -0.43
SMG1-204ENST00000561940 INTS6LQ5JSJ4 861 aaKnown RBP12.38□□□□□ -0.43
SMG1-204ENST00000561940 CCDC116Q8IYX3 515 aa12.38□□□□□ -0.43
SMG1-204ENST00000561940 ITPKCQ96DU7 683 aa12.38□□□□□ -0.43
SMG1-204ENST00000561940 ZNF330Q9Y3S2 320 aaPredicted RBP12.38□□□□□ -0.43
SMG1-204ENST00000561940 ZIC2O95409 532 aaPredicted RBP12.37□□□□□ -0.43
SMG1-204ENST00000561940 TIMP2P16035 220 aa12.37□□□□□ -0.43
SMG1-204ENST00000561940 SMCPP49901 116 aaPredicted RBP12.36□□□□□ -0.43
SMG1-204ENST00000561940 NBPF20Q3BBV1 942 aa12.36□□□□□ -0.43
SMG1-204ENST00000561940 PPP1R26Q5T8A7 1209 aaPredicted RBP12.36□□□□□ -0.43
SMG1-204ENST00000561940 CRIPAKQ8N1N5 446 aa12.36□□□□□ -0.43
SMG1-204ENST00000561940 KLF16Q9BXK1 252 aaPredicted RBP12.36□□□□□ -0.43
SMG1-204ENST00000561940 TMPRSS4Q9NRS4 437 aa12.35□□□□□ -0.43
SMG1-204ENST00000561940 BMP1P13497 986 aa12.33□□□□□ -0.44
SMG1-204ENST00000561940 EIF4G2P78344 907 aaKnown RBP eCLIP12.33□□□□□ -0.44
SMG1-204ENST00000561940 WASHC4Q2M389 1173 aa12.33□□□□□ -0.44
SMG1-204ENST00000561940 POTECB2RU33 542 aa12.32□□□□□ -0.44
SMG1-204ENST00000561940 ERVH48-1M5A8F1 160 aa12.32□□□□□ -0.44
SMG1-204ENST00000561940 EMILIN1Q9Y6C2 1016 aa12.32□□□□□ -0.44
SMG1-204ENST00000561940 ESPNB1AK53 854 aa12.31□□□□□ -0.44
SMG1-204ENST00000561940 CEP126Q9P2H0 1117 aa12.31□□□□□ -0.44
SMG1-204ENST00000561940 DHX9Q08211 1270 aaKnown RBP12.3□□□□□ -0.44
SMG1-204ENST00000561940 CBLBQ13191 982 aa12.3□□□□□ -0.44
SMG1-204ENST00000561940 WWC1Q8IX03 1113 aa12.3□□□□□ -0.44
SMG1-204ENST00000561940 ATP13A2Q9NQ11 1180 aa12.3□□□□□ -0.44
SMG1-204ENST00000561940 PGPEP1Q9NXJ5 209 aa12.29□□□□□ -0.44
SMG1-204ENST00000561940 GMPR2Q9P2T1 348 aaKnown RBP12.29□□□□□ -0.44
SMG1-204ENST00000561940 POM121CA8CG34 1229 aa12.28□□□□□ -0.44
SMG1-204ENST00000561940 MCCD1P59942 119 aaPredicted RBP12.28□□□□□ -0.44
SMG1-204ENST00000561940 SEMA3FQ13275 785 aa12.28□□□□□ -0.44
SMG1-204ENST00000561940 ZNF787Q6DD87 383 aa12.27□□□□□ -0.45
SMG1-204ENST00000561940 TRIM46Q7Z4K8 759 aa12.27□□□□□ -0.45
SMG1-204ENST00000561940 ZNF784Q8NCA9 323 aaPredicted RBP12.27□□□□□ -0.45
SMG1-204ENST00000561940 C1orf115Q9H7X2 142 aa12.26□□□□□ -0.45
SMG1-204ENST00000561940 CYLDQ9NQC7 956 aa12.26□□□□□ -0.45
SMG1-204ENST00000561940 ARID3CA6NKF2 412 aa12.25□□□□□ -0.45
SMG1-204ENST00000561940 TSGA10IPQ3SY00 556 aa12.25□□□□□ -0.45
SMG1-204ENST00000561940 C6orf118Q5T5N4 469 aa12.25□□□□□ -0.45
SMG1-204ENST00000561940 PROSER2Q86WR7 435 aaPredicted RBP12.25□□□□□ -0.45
SMG1-204ENST00000561940 ZNF592Q92610 1267 aa12.25□□□□□ -0.45
SMG1-204ENST00000561940 ADD1P35611 737 aaKnown RBP12.24□□□□□ -0.45
SMG1-204ENST00000561940 RNF20Q5VTR2 975 aa12.24□□□□□ -0.45
SMG1-204ENST00000561940 MRPL14Q6P1L8 145 aaKnown RBP12.24□□□□□ -0.45
SMG1-204ENST00000561940 SEPT12Q8IYM1 358 aa12.24□□□□□ -0.45
SMG1-204ENST00000561940 PURBQ96QR8 312 aaKnown RBP12.24□□□□□ -0.45
SMG1-204ENST00000561940 PCDHB11Q9Y5F2 797 aa12.24□□□□□ -0.45
SMG1-204ENST00000561940 AGBL1Q96MI9 1066 aa12.23□□□□□ -0.45
SMG1-204ENST00000561940 SLFNL1Q499Z3 407 aa12.22□□□□□ -0.45
SMG1-204ENST00000561940 FNBP4Q8N3X1 1017 aaPredicted RBP12.22□□□□□ -0.45
SMG1-204ENST00000561940 ZFP42Q96MM3 310 aa12.22□□□□□ -0.45
SMG1-204ENST00000561940 CCDC85AQ96PX6 553 aaPredicted RBP12.22□□□□□ -0.45
SMG1-204ENST00000561940 ARXQ96QS3 562 aa12.22□□□□□ -0.45
SMG1-204ENST00000561940 C11orf95C9JLR9 678 aaPredicted RBP12.21□□□□□ -0.45
SMG1-204ENST00000561940 LILRA1O75019 489 aa12.21□□□□□ -0.45
SMG1-204ENST00000561940 MEIOBQ8N635 442 aa12.21□□□□□ -0.45
SMG1-204ENST00000561940 CDCA7Q9BWT1 371 aaPredicted RBP12.21□□□□□ -0.45
SMG1-204ENST00000561940 A6NJR5 290 aa12.2□□□□□ -0.46
SMG1-204ENST00000561940 BMP2P12643 396 aa12.2□□□□□ -0.46
SMG1-204ENST00000561940 RELBQ01201 579 aa12.2□□□□□ -0.46
SMG1-204ENST00000561940 SCARF1Q14162 830 aa12.2□□□□□ -0.46
SMG1-204ENST00000561940 HDGFL1Q5TGJ6 251 aa12.2□□□□□ -0.46
SMG1-204ENST00000561940 RNF135Q8IUD6 432 aa12.2□□□□□ -0.46
SMG1-204ENST00000561940 ALG2Q9H553 416 aa12.2□□□□□ -0.46
SMG1-204ENST00000561940 UPP2O95045 317 aa12.19□□□□□ -0.46
SMG1-204ENST00000561940 SOX11P35716 441 aa12.19□□□□□ -0.46
SMG1-204ENST00000561940 SCTRP47872 440 aa12.19□□□□□ -0.46
SMG1-204ENST00000561940 PHTF2Q8N3S3 785 aa12.19□□□□□ -0.46
SMG1-204ENST00000561940 ADAMTS19Q8TE59 1207 aa12.19□□□□□ -0.46
SMG1-204ENST00000561940 PIK3CDO00329 1044 aa12.18□□□□□ -0.46
SMG1-204ENST00000561940 SNRPBP14678 240 aaKnown RBP12.18□□□□□ -0.46
SMG1-204ENST00000561940 Q6ZVU0 165 aa12.18□□□□□ -0.46
SMG1-204ENST00000561940 LINC00528Q8N1L1 170 aa12.18□□□□□ -0.46
SMG1-204ENST00000561940 ZNF395Q9H8N7 513 aaPredicted RBP12.18□□□□□ -0.46
SMG1-204ENST00000561940 TRAK2O60296 914 aa12.17□□□□□ -0.46
SMG1-204ENST00000561940 ARID3AQ99856 593 aa12.16□□□□□ -0.46
SMG1-204ENST00000561940 TSEN34Q9BSV6 310 aaKnown RBP12.16□□□□□ -0.46
SMG1-204ENST00000561940 SENP2Q9HC62 589 aa12.16□□□□□ -0.46
SMG1-204ENST00000561940 OXLD1Q5BKU9 147 aa12.15□□□□□ -0.46
SMG1-204ENST00000561940 CC2D2BQ6DHV5 1058 aa12.15□□□□□ -0.46
SMG1-204ENST00000561940 ESF1Q9H501 851 aaKnown RBP12.15□□□□□ -0.46
SMG1-204ENST00000561940 ZNF777Q9ULD5 760 aaPredicted RBP12.15□□□□□ -0.46
SMG1-204ENST00000561940 DOLKQ9UPQ8 538 aa12.15□□□□□ -0.46
SMG1-204ENST00000561940 SOBPA7XYQ1 873 aa12.14□□□□□ -0.47
SMG1-204ENST00000561940 TRIM47Q96LD4 638 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms