RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 ZBTB7CA1YPR0 619 aa21.93■■□□□ 1.1
LDLR-206ENST00000557958 CCDC136Q96JN2 1154 aa21.92■■□□□ 1.1
LDLR-206ENST00000557958 MYH16Q9H6N6 1097 aa21.92■■□□□ 1.1
LDLR-206ENST00000557958 KIF1AQ12756 1690 aa21.92■■□□□ 1.1
LDLR-206ENST00000557958 USP31Q70CQ4 1352 aa21.92■■□□□ 1.1
LDLR-206ENST00000557958 B4GALNT3Q6L9W6 998 aa21.92■■□□□ 1.1
LDLR-206ENST00000557958 PIK3C2AO00443 1686 aa21.91■■□□□ 1.1
LDLR-206ENST00000557958 SPINK5Q9NQ38 1064 aaPredicted RBP21.91■■□□□ 1.1
LDLR-206ENST00000557958 LTBP4Q8N2S1 1624 aa21.91■■□□□ 1.1
LDLR-206ENST00000557958 TMPOP42166 694 aaKnown RBP21.9■■□□□ 1.1
LDLR-206ENST00000557958 AMPHP49418 695 aa21.89■■□□□ 1.09
LDLR-206ENST00000557958 IL13P35225 146 aa21.88■■□□□ 1.09
LDLR-206ENST00000557958 RSPH6AQ9H0K4 717 aa21.87■■□□□ 1.09
LDLR-206ENST00000557958 MAP3K19Q56UN5 1328 aa21.87■■□□□ 1.09
LDLR-206ENST00000557958 IL16Q14005 1332 aa21.86■■□□□ 1.09
LDLR-206ENST00000557958 PRKAR2BP31323 418 aa21.86■■□□□ 1.09
LDLR-206ENST00000557958 HSP90AB2PQ58FF8 381 aa21.85■■□□□ 1.09
LDLR-206ENST00000557958 EXOC6Q8TAG9 804 aa21.85■■□□□ 1.09
LDLR-206ENST00000557958 PLIN1O60240 522 aa21.84■■□□□ 1.09
LDLR-206ENST00000557958 RIPK4P57078 832 aa21.84■■□□□ 1.09
LDLR-206ENST00000557958 PIP4K2BP78356 416 aa21.84■■□□□ 1.09
LDLR-206ENST00000557958 GCP02774 474 aa21.83■■□□□ 1.09
LDLR-206ENST00000557958 KCNH5Q8NCM2 988 aa21.83■■□□□ 1.09
LDLR-206ENST00000557958 CABLES1Q8TDN4 633 aa21.83■■□□□ 1.09
LDLR-206ENST00000557958 CT47B1P0C2W7 299 aaPredicted RBP21.83■■□□□ 1.08
LDLR-206ENST00000557958 SBNO1A3KN83 1393 aa21.82■■□□□ 1.08
LDLR-206ENST00000557958 CALD1Q05682 793 aaKnown RBP21.81■■□□□ 1.08
LDLR-206ENST00000557958 SPATA31A3Q5VYP0 1347 aa21.81■■□□□ 1.08
LDLR-206ENST00000557958 TRPM3Q9HCF6 1732 aaPredicted RBP21.81■■□□□ 1.08
LDLR-206ENST00000557958 LTV1Q96GA3 475 aaPredicted RBP21.81■■□□□ 1.08
LDLR-206ENST00000557958 TRIM35Q9UPQ4 493 aa21.81■■□□□ 1.08
LDLR-206ENST00000557958 PXDNQ92626 1479 aa21.8■■□□□ 1.08
LDLR-206ENST00000557958 HMOX1P09601 288 aa21.8■■□□□ 1.08
LDLR-206ENST00000557958 TOM1O60784 492 aa21.79■■□□□ 1.08
LDLR-206ENST00000557958 ZC3H6P61129 1189 aaKnown RBP21.79■■□□□ 1.08
LDLR-206ENST00000557958 LMOD3Q0VAK6 560 aa21.79■■□□□ 1.08
LDLR-206ENST00000557958 NFE2L2Q16236 605 aa21.79■■□□□ 1.08
LDLR-206ENST00000557958 FLT4P35916 1363 aa21.79■■□□□ 1.08
LDLR-206ENST00000557958 KIF24Q5T7B8 1368 aa21.79■■□□□ 1.08
LDLR-206ENST00000557958 TNS3Q68CZ2 1445 aa21.79■■□□□ 1.08
LDLR-206ENST00000557958 EIF4A2Q14240 407 aaKnown RBP21.79■■□□□ 1.08
LDLR-206ENST00000557958 USP54Q70EL1 1684 aa21.79■■□□□ 1.08
LDLR-206ENST00000557958 SOS2Q07890 1332 aaPredicted RBP21.78■■□□□ 1.08
LDLR-206ENST00000557958 UBAP1LF5GYI3 381 aa21.77■■□□□ 1.08
LDLR-206ENST00000557958 HOXC9P31274 260 aa21.77■■□□□ 1.08
LDLR-206ENST00000557958 HAP1P54257 671 aaPredicted RBP21.77■■□□□ 1.08
LDLR-206ENST00000557958 CRBNQ96SW2 442 aa21.77■■□□□ 1.08
LDLR-206ENST00000557958 MARF1Q9Y4F3 1742 aaKnown RBP21.77■■□□□ 1.08
LDLR-206ENST00000557958 CANXP27824 592 aaKnown RBP21.76■■□□□ 1.07
LDLR-206ENST00000557958 FANCIQ9NVI1 1328 aa21.76■■□□□ 1.07
LDLR-206ENST00000557958 ARHGEF10O15013 1369 aa21.75■■□□□ 1.07
LDLR-206ENST00000557958 USP19O94966 1318 aa21.74■■□□□ 1.07
LDLR-206ENST00000557958 PEAK1Q9H792 1746 aa21.74■■□□□ 1.07
LDLR-206ENST00000557958 BCAR3O75815 825 aa21.74■■□□□ 1.07
LDLR-206ENST00000557958 RARSP54136 660 aaKnown RBP21.74■■□□□ 1.07
LDLR-206ENST00000557958 PDE3AQ14432 1141 aa21.74■■□□□ 1.07
LDLR-206ENST00000557958 ALS2Q96Q42 1657 aa21.73■■□□□ 1.07
LDLR-206ENST00000557958 C20orf194Q5TEA3 1177 aa21.73■■□□□ 1.07
LDLR-206ENST00000557958 ARHGEF25Q86VW2 580 aa21.73■■□□□ 1.07
LDLR-206ENST00000557958 IP6K1Q92551 441 aa21.73■■□□□ 1.07
LDLR-206ENST00000557958 PHACTR3Q96KR7 559 aa21.73■■□□□ 1.07
LDLR-206ENST00000557958 SULT6B1Q6IMI4 303 aa21.72■■□□□ 1.07
LDLR-206ENST00000557958 ROBO1Q9Y6N7 1651 aa21.72■■□□□ 1.07
LDLR-206ENST00000557958 NFAT5O94916 1531 aa21.71■■□□□ 1.07
LDLR-206ENST00000557958 AEBP1Q8IUX7 1158 aa21.7■■□□□ 1.06
LDLR-206ENST00000557958 CERKQ8TCT0 537 aa21.7■■□□□ 1.06
LDLR-206ENST00000557958 LRRC59Q96AG4 307 aaKnown RBP21.7■■□□□ 1.06
LDLR-206ENST00000557958 RTL1A6NKG5 1358 aa21.7■■□□□ 1.06
LDLR-206ENST00000557958 SLIT3O75094 1523 aa21.69■■□□□ 1.06
LDLR-206ENST00000557958 MED1Q15648 1581 aaPredicted RBP21.69■■□□□ 1.06
LDLR-206ENST00000557958 CHRNA2Q15822 529 aa21.69■■□□□ 1.06
LDLR-206ENST00000557958 TSR2Q969E8 191 aaKnown RBP21.69■■□□□ 1.06
LDLR-206ENST00000557958 RGPD1P0DJD0 1748 aa21.69■■□□□ 1.06
LDLR-206ENST00000557958 GNAI1P63096 354 aa21.68■■□□□ 1.06
LDLR-206ENST00000557958 EYA1Q99502 592 aa21.68■■□□□ 1.06
LDLR-206ENST00000557958 IFT57Q9NWB7 429 aa21.67■■□□□ 1.06
LDLR-206ENST00000557958 AXIN2Q9Y2T1 843 aa21.67■■□□□ 1.06
LDLR-206ENST00000557958 LTN1O94822 1766 aa21.67■■□□□ 1.06
LDLR-206ENST00000557958 MS4A1P11836 297 aa21.66■■□□□ 1.06
LDLR-206ENST00000557958 EXOSC9Q06265 439 aaKnown RBP21.66■■□□□ 1.06
LDLR-206ENST00000557958 ZNF428Q96B54 188 aa21.66■■□□□ 1.06
LDLR-206ENST00000557958 AAMPQ13685 434 aa21.66■■□□□ 1.06
LDLR-206ENST00000557958 USHBP1Q8N6Y0 703 aa21.66■■□□□ 1.06
LDLR-206ENST00000557958 NHSL1Q5SYE7 1610 aa21.66■■□□□ 1.06
LDLR-206ENST00000557958 FRAT1Q92837 279 aaPredicted RBP21.65■■□□□ 1.06
LDLR-206ENST00000557958 ANKRD24Q8TF21 1146 aa21.64■■□□□ 1.06
LDLR-206ENST00000557958 KIAA0232Q92628 1395 aa21.64■■□□□ 1.05
LDLR-206ENST00000557958 KDRP35968 1356 aa21.63■■□□□ 1.05
LDLR-206ENST00000557958 IGSF1Q8N6C5 1336 aa21.63■■□□□ 1.05
LDLR-206ENST00000557958 PRDM11Q9NQV5 511 aa21.63■■□□□ 1.05
LDLR-206ENST00000557958 SMC4Q9NTJ3 1288 aa21.62■■□□□ 1.05
LDLR-206ENST00000557958 LAS1LQ9Y4W2 734 aaKnown RBP21.62■■□□□ 1.05
LDLR-206ENST00000557958 CSB-PGBD3P0DP91 1061 aa21.61■■□□□ 1.05
LDLR-206ENST00000557958 NBPF6Q5VWK0 638 aa21.61■■□□□ 1.05
LDLR-206ENST00000557958 NBPF4Q96M43 638 aa21.61■■□□□ 1.05
LDLR-206ENST00000557958 CFAP44Q96MT7 982 aa21.61■■□□□ 1.05
LDLR-206ENST00000557958 ALDH1L2Q3SY69 923 aa21.6■■□□□ 1.05
LDLR-206ENST00000557958 ZKSCAN2Q63HK3 967 aa21.6■■□□□ 1.05
LDLR-206ENST00000557958 KIF16BQ96L93 1317 aa21.6■■□□□ 1.05
LDLR-206ENST00000557958 PHRF1Q9P1Y6 1649 aaKnown RBP21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms