RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 EIF4A2Q14240 407 aaKnown RBP13.03□□□□□ -0.32
TMEM260-211ENST00000556648 AEBP1Q8IUX7 1158 aa13.03□□□□□ -0.32
TMEM260-211ENST00000556648 PCDHB15Q9Y5E8 787 aa13.03□□□□□ -0.32
TMEM260-211ENST00000556648 PIK3C2AO00443 1686 aa13.03□□□□□ -0.32
TMEM260-211ENST00000556648 FMN2Q9NZ56 1722 aa13.03□□□□□ -0.32
TMEM260-211ENST00000556648 ZNF142P52746 1687 aaPredicted RBP13.02□□□□□ -0.32
TMEM260-211ENST00000556648 CT47B1P0C2W7 299 aaPredicted RBP13.02□□□□□ -0.33
TMEM260-211ENST00000556648 ANP32AP39687 249 aaKnown RBP13.02□□□□□ -0.33
TMEM260-211ENST00000556648 ZKSCAN2Q63HK3 967 aa13.02□□□□□ -0.33
TMEM260-211ENST00000556648 USP31Q70CQ4 1352 aa13.02□□□□□ -0.33
TMEM260-211ENST00000556648 ADAMTSL3P82987 1691 aa13.02□□□□□ -0.33
TMEM260-211ENST00000556648 RGPD1P0DJD0 1748 aa13.02□□□□□ -0.33
TMEM260-211ENST00000556648 FAM83GA6ND36 823 aa13.01□□□□□ -0.33
TMEM260-211ENST00000556648 NEFMP07197 916 aa13.01□□□□□ -0.33
TMEM260-211ENST00000556648 TRIM27P14373 513 aa13.01□□□□□ -0.33
TMEM260-211ENST00000556648 MVPQ14764 893 aaKnown RBP13.01□□□□□ -0.33
TMEM260-211ENST00000556648 MARF1Q9Y4F3 1742 aaKnown RBP13.01□□□□□ -0.33
TMEM260-211ENST00000556648 HSP90AB2PQ58FF8 381 aa13□□□□□ -0.33
TMEM260-211ENST00000556648 ERICH6Q7L0X2 663 aa13□□□□□ -0.33
TMEM260-211ENST00000556648 DZIP1LQ8IYY4 767 aaKnown RBP13□□□□□ -0.33
TMEM260-211ENST00000556648 NOB1Q9ULX3 412 aaKnown RBP13□□□□□ -0.33
TMEM260-211ENST00000556648 NOP58Q9Y2X3 529 aaKnown RBP13□□□□□ -0.33
TMEM260-211ENST00000556648 DCTN1Q14203 1278 aa13□□□□□ -0.33
TMEM260-211ENST00000556648 RBM33Q96EV2 1170 aaKnown RBP13□□□□□ -0.33
TMEM260-211ENST00000556648 IPO9Q96P70 1041 aaKnown RBP13□□□□□ -0.33
TMEM260-211ENST00000556648 C8orf34Q49A92 452 aa12.99□□□□□ -0.33
TMEM260-211ENST00000556648 SULT6B1Q6IMI4 303 aa12.99□□□□□ -0.33
TMEM260-211ENST00000556648 FTSJ3Q8IY81 847 aaKnown RBP12.99□□□□□ -0.33
TMEM260-211ENST00000556648 TSPYL6Q8N831 410 aa12.99□□□□□ -0.33
TMEM260-211ENST00000556648 NGDNQ8NEJ9 315 aaKnown RBP12.99□□□□□ -0.33
TMEM260-211ENST00000556648 CHD2O14647 1828 aaKnown RBP12.99□□□□□ -0.33
TMEM260-211ENST00000556648 MAP3K19Q56UN5 1328 aa12.98□□□□□ -0.33
TMEM260-211ENST00000556648 MBIPQ9NS73 344 aa12.98□□□□□ -0.33
TMEM260-211ENST00000556648 ANKARQ7Z5J8 1434 aa12.98□□□□□ -0.33
TMEM260-211ENST00000556648 TTC21AQ8NDW8 1320 aa12.98□□□□□ -0.33
TMEM260-211ENST00000556648 ZNF853P0CG23 659 aa12.98□□□□□ -0.33
TMEM260-211ENST00000556648 ATF7IPQ6VMQ6 1270 aa12.97□□□□□ -0.33
TMEM260-211ENST00000556648 PIK3R4Q99570 1358 aa12.97□□□□□ -0.33
TMEM260-211ENST00000556648 NUTM2GQ5VZR2 741 aa12.96□□□□□ -0.33
TMEM260-211ENST00000556648 TMEM57Q8N5G2 664 aa12.96□□□□□ -0.33
TMEM260-211ENST00000556648 IFT57Q9NWB7 429 aa12.96□□□□□ -0.33
TMEM260-211ENST00000556648 FAM161AQ3B820 660 aa12.96□□□□□ -0.34
TMEM260-211ENST00000556648 ITPRIPQ8IWB1 547 aa12.96□□□□□ -0.34
TMEM260-211ENST00000556648 ELL2O00472 640 aaPredicted RBP12.95□□□□□ -0.34
TMEM260-211ENST00000556648 VAMP4O75379 141 aa12.95□□□□□ -0.34
TMEM260-211ENST00000556648 VIRMAQ69YN4 1812 aaKnown RBP12.95□□□□□ -0.34
TMEM260-211ENST00000556648 GNAI1P63096 354 aa12.95□□□□□ -0.34
TMEM260-211ENST00000556648 ALDH1L2Q3SY69 923 aa12.95□□□□□ -0.34
TMEM260-211ENST00000556648 ANKLE2Q86XL3 938 aa12.95□□□□□ -0.34
TMEM260-211ENST00000556648 KIF16BQ96L93 1317 aa12.94□□□□□ -0.34
TMEM260-211ENST00000556648 MRPL50Q8N5N7 158 aaKnown RBP12.94□□□□□ -0.34
TMEM260-211ENST00000556648 C8orf58Q8NAV2 365 aa12.94□□□□□ -0.34
TMEM260-211ENST00000556648 SBNO1A3KN83 1393 aa12.94□□□□□ -0.34
TMEM260-211ENST00000556648 CALD1Q05682 793 aaKnown RBP12.93□□□□□ -0.34
TMEM260-211ENST00000556648 LMOD3Q0VAK6 560 aa12.93□□□□□ -0.34
TMEM260-211ENST00000556648 AAMPQ13685 434 aa12.93□□□□□ -0.34
TMEM260-211ENST00000556648 MCM10Q7L590 875 aa12.93□□□□□ -0.34
TMEM260-211ENST00000556648 PDZRN3Q9UPQ7 1066 aa12.93□□□□□ -0.34
TMEM260-211ENST00000556648 ARHGEF10O15013 1369 aa12.93□□□□□ -0.34
TMEM260-211ENST00000556648 USP54Q70EL1 1684 aa12.93□□□□□ -0.34
TMEM260-211ENST00000556648 FLT4P35916 1363 aa12.93□□□□□ -0.34
TMEM260-211ENST00000556648 NLRP6P59044 892 aa12.92□□□□□ -0.34
TMEM260-211ENST00000556648 KRT24Q2M2I5 525 aa12.92□□□□□ -0.34
TMEM260-211ENST00000556648 CFAP44Q96MT7 982 aa12.92□□□□□ -0.34
TMEM260-211ENST00000556648 RWDD1Q9H446 243 aaPredicted RBP12.91□□□□□ -0.34
TMEM260-211ENST00000556648 ZBTB47Q9UFB7 747 aaPredicted RBP12.91□□□□□ -0.34
TMEM260-211ENST00000556648 DDX19BQ9UMR2 479 aa12.91□□□□□ -0.34
TMEM260-211ENST00000556648 FOXO3O43524 673 aa12.91□□□□□ -0.34
TMEM260-211ENST00000556648 AMPHP49418 695 aa12.91□□□□□ -0.34
TMEM260-211ENST00000556648 TWISTNBQ3B726 338 aaPredicted RBP12.91□□□□□ -0.34
TMEM260-211ENST00000556648 IPO8O15397 1037 aaKnown RBP12.9□□□□□ -0.34
TMEM260-211ENST00000556648 EYA1Q99502 592 aa12.9□□□□□ -0.34
TMEM260-211ENST00000556648 NPHP4O75161 1426 aaPredicted RBP12.9□□□□□ -0.34
TMEM260-211ENST00000556648 NWD1Q149M9 1564 aa12.9□□□□□ -0.34
TMEM260-211ENST00000556648 BRPF1P55201 1214 aaPredicted RBP12.89□□□□□ -0.35
TMEM260-211ENST00000556648 ZBTB40Q9NUA8 1239 aa12.89□□□□□ -0.35
TMEM260-211ENST00000556648 CRB1P82279 1406 aa12.89□□□□□ -0.35
TMEM260-211ENST00000556648 ADGRL3Q9HAR2 1447 aa12.89□□□□□ -0.35
TMEM260-211ENST00000556648 MTHFSDQ2M296 383 aaKnown RBP12.89□□□□□ -0.35
TMEM260-211ENST00000556648 POTEDQ86YR6 584 aa12.89□□□□□ -0.35
TMEM260-211ENST00000556648 PHF8Q9UPP1 1060 aa12.89□□□□□ -0.35
TMEM260-211ENST00000556648 IGSF1Q8N6C5 1336 aa12.89□□□□□ -0.35
TMEM260-211ENST00000556648 C14orf37Q86TY3 774 aa12.88□□□□□ -0.35
TMEM260-211ENST00000556648 ABTB2Q8N961 1025 aa12.88□□□□□ -0.35
TMEM260-211ENST00000556648 ZNF428Q96B54 188 aa12.88□□□□□ -0.35
TMEM260-211ENST00000556648 LTN1O94822 1766 aa12.88□□□□□ -0.35
TMEM260-211ENST00000556648 HOXC9P31274 260 aa12.88□□□□□ -0.35
TMEM260-211ENST00000556648 KDRP35968 1356 aa12.87□□□□□ -0.35
TMEM260-211ENST00000556648 SEC24BO95487 1268 aa12.87□□□□□ -0.35
TMEM260-211ENST00000556648 HDAC1Q13547 482 aaPredicted RBP12.87□□□□□ -0.35
TMEM260-211ENST00000556648 LTV1Q96GA3 475 aaPredicted RBP12.87□□□□□ -0.35
TMEM260-211ENST00000556648 C1orf115Q9H7X2 142 aa12.87□□□□□ -0.35
TMEM260-211ENST00000556648 ABCC4O15439 1325 aa12.87□□□□□ -0.35
TMEM260-211ENST00000556648 CHL1O00533 1208 aa12.86□□□□□ -0.35
TMEM260-211ENST00000556648 MIS18AQ9NYP9 233 aa12.86□□□□□ -0.35
TMEM260-211ENST00000556648 SETD1BQ9UPS6 1966 aaKnown RBP12.86□□□□□ -0.35
TMEM260-211ENST00000556648 NFAT5O94916 1531 aa12.86□□□□□ -0.35
TMEM260-211ENST00000556648 USP19O94966 1318 aa12.85□□□□□ -0.35
TMEM260-211ENST00000556648 LRRC37A3O60309 1634 aa12.85□□□□□ -0.35
TMEM260-211ENST00000556648 RGS12O14924 1447 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms