RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 USP19O94966 1318 aa15.47■□□□□ 0.07
SHMT2-207ENST00000553837 ADAMTS13Q76LX8 1427 aa15.47■□□□□ 0.07
SHMT2-207ENST00000553837 AAMPQ13685 434 aa15.47■□□□□ 0.07
SHMT2-207ENST00000553837 THUMPD2Q9BTF0 503 aaKnown RBP15.47■□□□□ 0.07
SHMT2-207ENST00000553837 NOB1Q9ULX3 412 aaKnown RBP15.47■□□□□ 0.07
SHMT2-207ENST00000553837 VIRMAQ69YN4 1812 aaKnown RBP15.47■□□□□ 0.07
SHMT2-207ENST00000553837 MON2Q7Z3U7 1717 aa15.47■□□□□ 0.07
SHMT2-207ENST00000553837 GOLGA6L3A6NEY3 463 aa15.46■□□□□ 0.07
SHMT2-207ENST00000553837 SIRT1Q96EB6 747 aa15.46■□□□□ 0.07
SHMT2-207ENST00000553837 PDZRN3Q9UPQ7 1066 aa15.46■□□□□ 0.07
SHMT2-207ENST00000553837 CCDC61Q9Y6R9 512 aa15.46■□□□□ 0.07
SHMT2-207ENST00000553837 LTKP29376 864 aa15.46■□□□□ 0.07
SHMT2-207ENST00000553837 RRS1Q15050 365 aaKnown RBP15.46■□□□□ 0.07
SHMT2-207ENST00000553837 FTSJ3Q8IY81 847 aaKnown RBP15.45■□□□□ 0.06
SHMT2-207ENST00000553837 AKAP12Q02952 1782 aa15.45■□□□□ 0.06
SHMT2-207ENST00000553837 XRCC6P12956 609 aaKnown RBP eCLIP15.45■□□□□ 0.06
SHMT2-207ENST00000553837 ATF7IPQ6VMQ6 1270 aa15.45■□□□□ 0.06
SHMT2-207ENST00000553837 C3P01024 1663 aa15.44■□□□□ 0.06
SHMT2-207ENST00000553837 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-207ENST00000553837 CEBPAP49715 358 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-207ENST00000553837 NFE2L2Q16236 605 aa15.44■□□□□ 0.06
SHMT2-207ENST00000553837 CDK12Q9NYV4 1490 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-207ENST00000553837 AATKQ6ZMQ8 1374 aa15.44■□□□□ 0.06
SHMT2-207ENST00000553837 FGD1P98174 961 aa15.43■□□□□ 0.06
SHMT2-207ENST00000553837 SLKQ9H2G2 1235 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-207ENST00000553837 ANTXR1Q9H6X2 564 aa15.43■□□□□ 0.06
SHMT2-207ENST00000553837 FSD2A1L4K1 749 aa15.43■□□□□ 0.06
SHMT2-207ENST00000553837 TMEM57Q8N5G2 664 aa15.43■□□□□ 0.06
SHMT2-207ENST00000553837 RWDD1Q9H446 243 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-207ENST00000553837 HDGFP51858 240 aaKnown RBP15.42■□□□□ 0.06
SHMT2-207ENST00000553837 ITPRIPQ8IWB1 547 aa15.42■□□□□ 0.06
SHMT2-207ENST00000553837 COG3Q96JB2 828 aa15.42■□□□□ 0.06
SHMT2-207ENST00000553837 ITSN1Q15811 1721 aa15.41■□□□□ 0.06
SHMT2-207ENST00000553837 NUTM2FA1L443 756 aa15.41■□□□□ 0.06
SHMT2-207ENST00000553837 TSPYL6Q8N831 410 aa15.41■□□□□ 0.06
SHMT2-207ENST00000553837 PTPRUQ92729 1446 aa15.4■□□□□ 0.06
SHMT2-207ENST00000553837 RBM10P98175 930 aaKnown RBP15.4■□□□□ 0.06
SHMT2-207ENST00000553837 UPF2Q9HAU5 1272 aaKnown RBP15.4■□□□□ 0.06
SHMT2-207ENST00000553837 SLC26A8Q96RN1 970 aa15.39■□□□□ 0.05
SHMT2-207ENST00000553837 PLEKHG1Q9ULL1 1385 aa15.39■□□□□ 0.05
SHMT2-207ENST00000553837 DDX19BQ9UMR2 479 aa15.39■□□□□ 0.05
SHMT2-207ENST00000553837 DLG5Q8TDM6 1919 aa15.39■□□□□ 0.05
SHMT2-207ENST00000553837 FAM83GA6ND36 823 aa15.38■□□□□ 0.05
SHMT2-207ENST00000553837 VAMP4O75379 141 aa15.38■□□□□ 0.05
SHMT2-207ENST00000553837 ZNF853P0CG23 659 aa15.38■□□□□ 0.05
SHMT2-207ENST00000553837 ALDH1L2Q3SY69 923 aa15.38■□□□□ 0.05
SHMT2-207ENST00000553837 ZBTB40Q9NUA8 1239 aa15.38■□□□□ 0.05
SHMT2-207ENST00000553837 NRKQ7Z2Y5 1582 aa15.38■□□□□ 0.05
SHMT2-207ENST00000553837 ACEP12821 1306 aa15.38■□□□□ 0.05
SHMT2-207ENST00000553837 TTC21BQ7Z4L5 1316 aa15.38■□□□□ 0.05
SHMT2-207ENST00000553837 TOPAZ1Q8N9V7 1692 aa15.38■□□□□ 0.05
SHMT2-207ENST00000553837 ZNF692Q9BU19 519 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-207ENST00000553837 MBIPQ9NS73 344 aa15.38■□□□□ 0.05
SHMT2-207ENST00000553837 MRE11P49959 708 aa15.37■□□□□ 0.05
SHMT2-207ENST00000553837 PDE4CQ08493 712 aa15.37■□□□□ 0.05
SHMT2-207ENST00000553837 HDAC1Q13547 482 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-207ENST00000553837 AEBP1Q8IUX7 1158 aa15.37■□□□□ 0.05
SHMT2-207ENST00000553837 KIF16BQ96L93 1317 aa15.37■□□□□ 0.05
SHMT2-207ENST00000553837 ELL2O00472 640 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-207ENST00000553837 MCM4P33991 863 aa15.36■□□□□ 0.05
SHMT2-207ENST00000553837 DCTN1Q14203 1278 aa15.36■□□□□ 0.05
SHMT2-207ENST00000553837 MRPL50Q8N5N7 158 aaKnown RBP15.36■□□□□ 0.05
SHMT2-207ENST00000553837 IFT57Q9NWB7 429 aa15.36■□□□□ 0.05
SHMT2-207ENST00000553837 BRPF1P55201 1214 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-207ENST00000553837 PLPPR3Q6T4P5 718 aa15.35■□□□□ 0.05
SHMT2-207ENST00000553837 PLEKHG3A1L390 1219 aa15.35■□□□□ 0.05
SHMT2-207ENST00000553837 EIF4A2Q14240 407 aaKnown RBP15.35■□□□□ 0.05
SHMT2-207ENST00000553837 PEAK1Q9H792 1746 aa15.34■□□□□ 0.05
SHMT2-207ENST00000553837 OVOS2A0A0J9YW53 1432 aa15.34■□□□□ 0.05
SHMT2-207ENST00000553837 OVOS2Q6IE36 1432 aa15.34■□□□□ 0.05
SHMT2-207ENST00000553837 IPO8O15397 1037 aaKnown RBP15.34■□□□□ 0.05
SHMT2-207ENST00000553837 C8orf58Q8NAV2 365 aa15.34■□□□□ 0.05
SHMT2-207ENST00000553837 ARXQ96QS3 562 aa15.34■□□□□ 0.05
SHMT2-207ENST00000553837 TBC1D2Q9BYX2 928 aa15.34■□□□□ 0.05
SHMT2-207ENST00000553837 GNAI1P63096 354 aa15.34■□□□□ 0.05
SHMT2-207ENST00000553837 SMC5Q8IY18 1101 aa15.34■□□□□ 0.05
SHMT2-207ENST00000553837 TBC1D32Q96NH3 1257 aa15.34■□□□□ 0.05
SHMT2-207ENST00000553837 PANK2Q9BZ23 570 aa15.34■□□□□ 0.05
SHMT2-207ENST00000553837 ISY1Q9ULR0 285 aaKnown RBP15.34■□□□□ 0.05
SHMT2-207ENST00000553837 USP6P35125 1406 aa15.33■□□□□ 0.04
SHMT2-207ENST00000553837 CALD1Q05682 793 aaKnown RBP15.32■□□□□ 0.04
SHMT2-207ENST00000553837 TRAK2O60296 914 aa15.32■□□□□ 0.04
SHMT2-207ENST00000553837 HSP90AB2PQ58FF8 381 aa15.32■□□□□ 0.04
SHMT2-207ENST00000553837 SULT6B1Q6IMI4 303 aa15.32■□□□□ 0.04
SHMT2-207ENST00000553837 CFAP44Q96MT7 982 aa15.32■□□□□ 0.04
SHMT2-207ENST00000553837 GZF1Q9H116 711 aaPredicted RBP15.32■□□□□ 0.04
SHMT2-207ENST00000553837 AMOTL2Q9Y2J4 779 aa15.32■□□□□ 0.04
SHMT2-207ENST00000553837 SSH2Q76I76 1423 aa15.32■□□□□ 0.04
SHMT2-207ENST00000553837 ESPNB1AK53 854 aa15.31■□□□□ 0.04
SHMT2-207ENST00000553837 ZNF428Q96B54 188 aa15.31■□□□□ 0.04
SHMT2-207ENST00000553837 PTCH1Q13635 1447 aa15.31■□□□□ 0.04
SHMT2-207ENST00000553837 ARHGAP23Q9P227 1491 aa15.31■□□□□ 0.04
SHMT2-207ENST00000553837 NALCNQ8IZF0 1738 aa15.31■□□□□ 0.04
SHMT2-207ENST00000553837 A0A0U1RQG5 324 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-207ENST00000553837 ZBTB7BO15156 539 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-207ENST00000553837 TWISTNBQ3B726 338 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-207ENST00000553837 PIK3R4Q99570 1358 aa15.3■□□□□ 0.04
SHMT2-207ENST00000553837 SOX12O15370 315 aa15.3■□□□□ 0.04
SHMT2-207ENST00000553837 CHMP5Q9NZZ3 219 aa15.3■□□□□ 0.04
SHMT2-207ENST00000553837 SLIT1O75093 1534 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms