RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 PHACTR3Q96KR7 559 aa34.12■■■■□ 3.05
CCDC88C-205ENST00000553403 MAP3K19Q56UN5 1328 aa34.1■■■■□ 3.05
CCDC88C-205ENST00000553403 NLRP6P59044 892 aa34.09■■■■□ 3.05
CCDC88C-205ENST00000553403 PDE3AQ14432 1141 aa34.09■■■■□ 3.05
CCDC88C-205ENST00000553403 RBM33Q96EV2 1170 aaKnown RBP34.09■■■■□ 3.05
CCDC88C-205ENST00000553403 FLT4P35916 1363 aa34.09■■■■□ 3.05
CCDC88C-205ENST00000553403 KIF24Q5T7B8 1368 aa34.08■■■■□ 3.05
CCDC88C-205ENST00000553403 TOM1O60784 492 aa34.08■■■■□ 3.05
CCDC88C-205ENST00000553403 CALD1Q05682 793 aaKnown RBP34.08■■■■□ 3.05
CCDC88C-205ENST00000553403 RGPD1P0DJD0 1748 aa34.08■■■■□ 3.05
CCDC88C-205ENST00000553403 MARF1Q9Y4F3 1742 aaKnown RBP34.08■■■■□ 3.05
CCDC88C-205ENST00000553403 LMOD3Q0VAK6 560 aa34.06■■■■□ 3.04
CCDC88C-205ENST00000553403 C14orf37Q86TY3 774 aa34.06■■■■□ 3.04
CCDC88C-205ENST00000553403 HSP90AB2PQ58FF8 381 aa34.06■■■■□ 3.04
CCDC88C-205ENST00000553403 PROSER2Q86WR7 435 aaPredicted RBP34.05■■■■□ 3.04
CCDC88C-205ENST00000553403 TSR2Q969E8 191 aaKnown RBP34.04■■■■□ 3.04
CCDC88C-205ENST00000553403 ARHGEF10O15013 1369 aa34.04■■■■□ 3.04
CCDC88C-205ENST00000553403 ABTB2Q8N961 1025 aa34.03■■■■□ 3.04
CCDC88C-205ENST00000553403 ESCO1Q5FWF5 840 aa34.03■■■■□ 3.04
CCDC88C-205ENST00000553403 SOX12O15370 315 aa34.02■■■■□ 3.04
CCDC88C-205ENST00000553403 PIP4K2BP78356 416 aa34.01■■■■□ 3.04
CCDC88C-205ENST00000553403 EXOSC9Q06265 439 aaKnown RBP34.01■■■■□ 3.04
CCDC88C-205ENST00000553403 SULT6B1Q6IMI4 303 aa34.01■■■■□ 3.04
CCDC88C-205ENST00000553403 CANXP27824 592 aaKnown RBP34■■■■□ 3.03
CCDC88C-205ENST00000553403 AMPHP49418 695 aa34■■■■□ 3.03
CCDC88C-205ENST00000553403 PAK3O75914 559 aaPredicted RBP33.99■■■■□ 3.03
CCDC88C-205ENST00000553403 STRCP1A6NGW2 1772 aa33.99■■■■□ 3.03
CCDC88C-205ENST00000553403 PSME1Q06323 249 aa33.97■■■■□ 3.03
CCDC88C-205ENST00000553403 AEBP1Q8IUX7 1158 aa33.96■■■■□ 3.03
CCDC88C-205ENST00000553403 NCOA3Q9Y6Q9 1424 aa33.96■■■■□ 3.03
CCDC88C-205ENST00000553403 C19orf44Q9H6X5 657 aa33.96■■■■□ 3.03
CCDC88C-205ENST00000553403 IFT57Q9NWB7 429 aa33.96■■■■□ 3.03
CCDC88C-205ENST00000553403 DLG5Q8TDM6 1919 aa33.96■■■■□ 3.03
CCDC88C-205ENST00000553403 GNAI1P63096 354 aa33.94■■■■□ 3.02
CCDC88C-205ENST00000553403 RBM19Q9Y4C8 960 aaKnown RBP33.94■■■■□ 3.02
CCDC88C-205ENST00000553403 RTL1A6NKG5 1358 aa33.93■■■■□ 3.02
CCDC88C-205ENST00000553403 NUTM2GQ5VZR2 741 aa33.93■■■■□ 3.02
CCDC88C-205ENST00000553403 FRAT1Q92837 279 aaPredicted RBP33.93■■■■□ 3.02
CCDC88C-205ENST00000553403 ZNF853P0CG23 659 aa33.92■■■■□ 3.02
CCDC88C-205ENST00000553403 KDRP35968 1356 aa33.92■■■■□ 3.02
CCDC88C-205ENST00000553403 KIF1AQ12756 1690 aa33.91■■■■□ 3.02
CCDC88C-205ENST00000553403 HOXC9P31274 260 aa33.91■■■■□ 3.02
CCDC88C-205ENST00000553403 IGSF1Q8N6C5 1336 aa33.91■■■■□ 3.02
CCDC88C-205ENST00000553403 AAMPQ13685 434 aa33.9■■■■□ 3.02
CCDC88C-205ENST00000553403 ZNF428Q96B54 188 aa33.9■■■■□ 3.02
CCDC88C-205ENST00000553403 C1orf167Q5SNV9 1468 aa33.89■■■■□ 3.02
CCDC88C-205ENST00000553403 KDM2BQ8NHM5 1336 aa33.89■■■■□ 3.02
CCDC88C-205ENST00000553403 ORAI2Q96SN7 254 aa33.89■■■■□ 3.02
CCDC88C-205ENST00000553403 MS4A1P11836 297 aa33.88■■■■□ 3.01
CCDC88C-205ENST00000553403 DCCP43146 1447 aa33.88■■■■□ 3.01
CCDC88C-205ENST00000553403 CENPQQ7L2Z9 268 aaPredicted RBP33.87■■■■□ 3.01
CCDC88C-205ENST00000553403 PANK1Q8TE04 598 aa33.87■■■■□ 3.01
CCDC88C-205ENST00000553403 BCL2L13Q9BXK5 485 aa33.87■■■■□ 3.01
CCDC88C-205ENST00000553403 NFAT5O94916 1531 aa33.87■■■■□ 3.01
CCDC88C-205ENST00000553403 ALDH1L2Q3SY69 923 aa33.87■■■■□ 3.01
CCDC88C-205ENST00000553403 THUMPD2Q9BTF0 503 aaKnown RBP33.87■■■■□ 3.01
CCDC88C-205ENST00000553403 ZKSCAN2Q63HK3 967 aa33.86■■■■□ 3.01
CCDC88C-205ENST00000553403 KCNH5Q8NCM2 988 aa33.86■■■■□ 3.01
CCDC88C-205ENST00000553403 CFAP44Q96MT7 982 aa33.86■■■■□ 3.01
CCDC88C-205ENST00000553403 EYA1Q99502 592 aa33.86■■■■□ 3.01
CCDC88C-205ENST00000553403 SMC4Q9NTJ3 1288 aa33.86■■■■□ 3.01
CCDC88C-205ENST00000553403 LAS1LQ9Y4W2 734 aaKnown RBP33.85■■■■□ 3.01
CCDC88C-205ENST00000553403 SSH1Q8WYL5 1049 aa33.84■■■■□ 3.01
CCDC88C-205ENST00000553403 TMEM94Q12767 1356 aa33.84■■■■□ 3.01
CCDC88C-205ENST00000553403 COG6Q9Y2V7 657 aa33.84■■■■□ 3.01
CCDC88C-205ENST00000553403 TCERG1O14776 1098 aaKnown RBP33.81■■■■□ 3
CCDC88C-205ENST00000553403 FOXO3O43524 673 aa33.81■■■■□ 3
CCDC88C-205ENST00000553403 TRPM3Q9HCF6 1732 aaPredicted RBP33.81■■■■□ 3
CCDC88C-205ENST00000553403 IP6K1Q92551 441 aa33.8■■■■□ 3
CCDC88C-205ENST00000553403 MBIPQ9NS73 344 aa33.8■■■■□ 3
CCDC88C-205ENST00000553403 LTN1O94822 1766 aa33.8■■■■□ 3
CCDC88C-205ENST00000553403 PHRF1Q9P1Y6 1649 aaKnown RBP33.8■■■■□ 3
CCDC88C-205ENST00000553403 BRPF1P55201 1214 aaPredicted RBP33.8■■■■□ 3
CCDC88C-205ENST00000553403 SLIT3O75094 1523 aa33.79■■■■□ 3
CCDC88C-205ENST00000553403 FAM83GA6ND36 823 aa33.79■■■■□ 3
CCDC88C-205ENST00000553403 ATF3P18847 181 aa33.79■■■■□ 3
CCDC88C-205ENST00000553403 CLUAP1Q96AJ1 413 aa33.79■■■■□ 3
CCDC88C-205ENST00000553403 MST1RQ04912 1400 aa33.79■■■■□ 3
CCDC88C-205ENST00000553403 RLBP1P12271 317 aa33.78■■■■□ 3
CCDC88C-205ENST00000553403 HSPA1LP34931 641 aa33.78■■■■□ 3
CCDC88C-205ENST00000553403 KIF16BQ96L93 1317 aa33.78■■■■□ 3
CCDC88C-205ENST00000553403 KRT28Q7Z3Y7 464 aa33.77■■■■□ 3
CCDC88C-205ENST00000553403 DZIP1LQ8IYY4 767 aaKnown RBP33.77■■■■□ 3
CCDC88C-205ENST00000553403 GAS2L2Q8NHY3 880 aa33.76■■■□□ 2.99
CCDC88C-205ENST00000553403 IPO8O15397 1037 aaKnown RBP33.75■■■□□ 2.99
CCDC88C-205ENST00000553403 VAMP4O75379 141 aa33.75■■■□□ 2.99
CCDC88C-205ENST00000553403 TNNQ9UQP3 1299 aa33.75■■■□□ 2.99
CCDC88C-205ENST00000553403 DCTN1Q14203 1278 aa33.74■■■□□ 2.99
CCDC88C-205ENST00000553403 MTHFSDQ2M296 383 aaKnown RBP33.74■■■□□ 2.99
CCDC88C-205ENST00000553403 ATF7IPQ6VMQ6 1270 aa33.74■■■□□ 2.99
CCDC88C-205ENST00000553403 USP19O94966 1318 aa33.73■■■□□ 2.99
CCDC88C-205ENST00000553403 MVPQ14764 893 aaKnown RBP33.73■■■□□ 2.99
CCDC88C-205ENST00000553403 XIRP1Q702N8 1843 aaKnown RBP33.72■■■□□ 2.99
CCDC88C-205ENST00000553403 FTSJ3Q8IY81 847 aaKnown RBP33.72■■■□□ 2.99
CCDC88C-205ENST00000553403 CADPS2Q86UW7 1296 aa33.71■■■□□ 2.99
CCDC88C-205ENST00000553403 NOB1Q9ULX3 412 aaKnown RBP33.71■■■□□ 2.99
CCDC88C-205ENST00000553403 HTATSF1O43719 755 aaKnown RBP33.71■■■□□ 2.99
CCDC88C-205ENST00000553403 TRIM27P14373 513 aa33.71■■■□□ 2.99
CCDC88C-205ENST00000553403 CHL1O00533 1208 aa33.7■■■□□ 2.99
CCDC88C-205ENST00000553403 XPCQ01831 940 aaPredicted RBP33.7■■■□□ 2.99
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms